fabianegli/scp-recommendations-2022 1.0

bicore/scrattch_mapping 0.51

mziemann/meth_analysis latest

Based on BioC release 3.14, this image is designed for analysis of infinium methylation array data

crukmi/nas-app latest

crukmi/liana_tensor2 0.1.9

brianyee/rnaseq snakemake_1.0.0

mfsentma/rna latest

madhavsub/rstudio latestseurat

ucigenomics/spatiallibd latest

compbiocore/jupyterhub-docker-images-jh_image 20230524

wlc27/dcanr v1

ericsalomaki/mirna 071723

winuthayanon/seurat 4.3.0

matzieb/shiny-4.0.3-seurat4-spatial latest

brianyee/cropseq-essentials 1.0.0

cgwyx/easymicrobiomer latest

The best practice for microbiome analysis using R

nilesh0404/st_visualizer m1_0.1.2

tercen/tercen-studio-flowsuite 3.15-6

arihueb/conipher_env latest

cwong23/stx_env latest

Environment for spatial pipeline

sarahkeefe/ilp-v2-fs711 1.0

phenomedb/phenomedb-api-npc latest

mengchen18/mqc_collab 0.3.10

bbeacosta/sctype latest

weizhoujp/r-chtc-v1 latest

nahyunkong/sv-pipeline latest

kuangda/pc12 latest

bigomics/omicsplayground master

Self-service analytics for big omics data

abelean/seurat_desctools 4.1.0

bigomics/omicsplayground-base ub2204_v2

johnjun094/scgsea 0.3.11

DockerFile for benchmarking ssGSEA for single-cell RNA-seq

vanallenlab/g2c_pipeline nf_sex_ancestry_alpha

chiajungl/smk-scrna-extra 4.3-7.30-4.3

cmccornack/crmsc latest

andrewatmp/testf latest

eppicenter/mad4hatter latest

omicschef/rnaseqchef v1.0.9

RNAseqChef, an RNA-seq data controller highlighting gene expression features

jichanghan/scrna_seurat4_monocle2_wgcna_0213 06022023

bac3/microbiome latest

16S rRNA gene meta-barcoding NGS data analysis app - microbioma batterico. App streamlit.

qdidiscoveryservices/vcfcompare 1.0

fallingstar10/hbsigrocker latest

chiajungl/scrna-extra 4.3.0-1.4-4.3

qdidiscoveryservices/sclite_generate_clean_osprj v1.1

shengqh/cqs_smallrnaseq latest

njjai/scrattch_mapping 0.52.2

weizhoujp/rchtc 4.3.0

nciccbr/ccbr_r_4.3.0 v1

nathanprovin/cellcom 1.2.2

raghukirannavipoint/aldex2 mar23

jafoltz/sc_python 8

andrewatmp/qiime_unzip latest

stefanucciluca/tregopathies latest

etycksen/sc_deluxe 0.2

nikhil166/cellxgene_vip_docker v2.4

gyusikhwang/tgs v1

dzhakparov/geneselectr-image latest

evafastpf/commot 0.1

brusconi/seurat latest

biomehub/encodestatsbase 0.0.5

Basic docker image used as a base for EncodeStats.

omicschef/epigenomechef v1.1.3

jordantdocker/income_le_analysis latest

nfancy/scflow dev

jlphillips/csci 2024-Spring

MTSU Department of Computer Science Stack

fluentin55/singlecell_docker 1.2

jonasmrr/scrnaseq-pipeline latest

wyangwu/r4.1.2 latest

robertplayer/scidap-genelists v3.0.0

chunjiesamliu/scmocha latest

denglab/vpfkit latest

mengchen18/xcmsviewer_process latest

yosuketanigawa/rstudio_yt latest

chiajungl/scrna 4.3.0-5.0

bioedge/edge_24_1_ubuntu18 20231115

jingxin/terrascpipe v0

winuthayanon/rstudio RS4.3.1BM3.17

abelhj/rstudio 4.2.3

nbarrowman/cru-rocker v22

cgrlab/qiime2 2023.5

btrspg/vscode-dkd-env latest

imegusu/rstudio_rnaseq_all3 latest

RStudio based on bioconductor/bioconductor_docker:RELEASE_3_16 for RNA-Seq

ycli1995/bioinfo_dev 1.0.1

vasilkor/shiny-verse 1.0.19

etretiakov/rocker-session latest

phenomedb/phenomedb-airflow latest

mfsentma/atacseq latest

mziemann/enrichment_recipe latest

Example highly reproducible bioinformatics workflow including transcriptome and pathway analysis.

vidhyagnanasekaran/rocker-single-cell v1

daemontus/software-cell-oracle latest

ksinghal28/generate_pon 1.0

avi156/rocker-binder-upd 4.2.2

uvarc/rstudio tam5xe

natalie23gill/seurat-4-3_soupx-1-6-1_doubletfinder_67fb8b5 1.4

scRNA analysis- a collection of current tools, file used to build it is copied into /

cplaisier/ccafv2_extra latest

costanzopadovano/bioconductor_r_image jupyter_notebook_version

Docker image preconfigured with R and Bioconductor for streamlined bioinformatics data analysis.