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Docker

An open API service providing dependency metadata for docker images.

Package Usage : cran : ape

Explore the latest package usage data for ape in the cran ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 325
Total downloads: 894,238

More details on packages.ecosyste.ms - JSON

sheddn/bioinformatics-tools latest

  • version: 5.7-1
Latest release: over 2 years ago - 54 downloads - 2,518 dependencies
dragonflyscience/dragonverse-gls v2

  • version: 5.5
Latest release: over 3 years ago - 33 downloads - 2,363 dependencies
evolbioinfo/treestructure a831a66

treestructure R package (Volz et al. bioRxiv 704528; doi: https://doi.org/10.1101/704528)

  • version: 5.3
Latest release: over 5 years ago - 38 downloads - 508 dependencies
etretiakov/workbench-session-complete jammy-2024.09.19-custom-12.9

  • version: 5.7-1
Latest release: 10 months ago - 861 downloads - 6,961 dependencies
vnmd/afni_20.2.03 latest

  • version: 5.4
Latest release: about 5 years ago - 48 downloads - 864 dependencies
vnmd/afni_20.2.16 latest

  • version: 5.4-1
Latest release: almost 5 years ago - 40 downloads - 872 dependencies
shl198/sc_ppl 202306

  • version: 5.7-1
Latest release: about 2 years ago - 63 downloads - 2,005 dependencies
docker4sheng/workflow latest

  • version: 5.6-2
Latest release: over 2 years ago - 20 downloads - 1,519 dependencies
vnmd/afni_20.2.02 latest

  • version: 5.4
Latest release: about 5 years ago - 42 downloads - 898 dependencies
jdselwyn/lsd2 latest

  • version: 5.7-1
Latest release: over 2 years ago - 93 downloads - 43 dependencies
dragonflyscience/rsi-r-data 2020-08-28-11-33

  • version: 5.4
Latest release: almost 4 years ago - 124 downloads - 1,562 dependencies
gnwanne/decontx latest

  • version: 5.6-2
Latest release: over 2 years ago - 49 downloads - 938 dependencies
vnmd/afni_21.0.20 latest

  • version: 5.4-1
Latest release: over 4 years ago - 47 downloads - 933 dependencies
qdidiscoveryservices/ubuntu-1604-pipeline_docker-r_and_bioconductor latest

  • version: 5.4
Latest release: almost 5 years ago - 13 downloads - 1,153 dependencies
dragonflyscience/synthchm-20.04 2023-02-01

  • version: 5.6-2
Latest release: over 2 years ago - 85 downloads - 2,413 dependencies
dhspence/docker-wg-basestation latest

  • version: 5.3
Latest release: over 4 years ago - 53 downloads - 1,126 dependencies
chgyi/trinity 2.8.4

  • version: 5.0
Latest release: over 6 years ago - 19 downloads - 795 dependencies
vnmd/afni_20.3.01 latest

  • version: 5.4-1
Latest release: over 4 years ago - 34 downloads - 937 dependencies
qdidiscoveryservices/sc_pip_r_and_py latest

  • version: 5.4-1
Latest release: over 4 years ago - 14 downloads - 1,097 dependencies
kisudsoe/r-base latest

  • version: 5.7-1
Latest release: over 2 years ago - 127 downloads - 1,107 dependencies
sebrauschert/amplicon_pipeline v0.3.2

A pipeline for amplicon sequencing analysis of marine fish

  • version: 5.7-1
Latest release: about 2 years ago - 158 downloads - 571 dependencies
broadcptacdev/activedriver latest

  • version: 5.4-1
Latest release: over 2 years ago - 91 downloads - 720 dependencies
tercen/normalyzer_operator 0.1.4

  • version: 5.6-2
Latest release: over 1 year ago - 68 downloads - 590 dependencies
viascientific/rstudio-app 1.0

  • version: 5.7-1
Latest release: over 2 years ago - 97 downloads - 1,074 dependencies
albertea/numbat_light 02

  • version: 5.7-1
Latest release: over 2 years ago - 125 downloads - 301 dependencies
cjha15/dockerfile BC

  • version: 5.7-1
Latest release: almost 2 years ago - 143 downloads - 488 dependencies
mattjmeier/r-odaf-hc latest

Under Development. Containerized version of the R-ODAF Health Canada Pipeline.

  • version: 5.6-2
Latest release: over 2 years ago - 25 downloads - 598 dependencies
crpeters/r-methylkit 4.2.1

  • version: 5.6-2
Latest release: over 2 years ago - 48 downloads - 383 dependencies
dragonflyscience/fish-ibi-shiny-20.04 2022-11-28

  • version: 5.5
Latest release: over 2 years ago - 60 downloads - 2,318 dependencies
veitveit/maxquantworkflow dev

  • version: 5.4-1
Latest release: over 4 years ago - 26 downloads - 351 dependencies
qdidiscoveryservices/seurat_tidyverse latest

  • version: 5.4-1
Latest release: over 4 years ago - 13 downloads - 435 dependencies
alexthiery/seurat-monocle 0.1

  • version: 5.7-1
Latest release: over 2 years ago - 62 downloads - 1,062 dependencies
eduar2/cami latest

  • version: 5.6-2
Latest release: over 2 years ago - 26 downloads - 211 dependencies
njjai/genebasis latest

  • version: 5.7-1
Latest release: about 2 years ago - 43 downloads - 789 dependencies
abelean/seurat_azimuth 5.0.1

  • version: 5.6-2
Latest release: over 1 year ago - 1,367 downloads - 1,141 dependencies
denglab/vpfkit_base latest

  • version: 5.6-2
Latest release: over 2 years ago - 24 downloads - 1,089 dependencies
qdidiscoveryservices/pipeline_docker-r_and_bioconductor latest

  • version: 5.3
Latest release: almost 5 years ago - 10 downloads - 431 dependencies
dragonflyscience/nefd 2020-10-02

  • version: 5.4
Latest release: almost 5 years ago - 37 downloads - 377 dependencies
bixbeta/czid v6

updated to https://github.com/chanzuckerberg/czid-cli/releases/tag/v6.0.0

  • version: 5.4-1
Latest release: 12 months ago - 39 downloads - 421 dependencies
bakeronit/rstudio_hpc_cancer 0.1.3

rocker-rstudio with some R packages installed in cancer genomic analysis

  • version: 5.7-1
Latest release: over 1 year ago - 110 downloads - 1,150 dependencies
mattjmeier/r-odaf-hc-base latest

  • version: 5.6-2
Latest release: over 2 years ago - 20 downloads - 598 dependencies
mpaltsai/biotextquest_top2vec 27122022

  • version: 5.6-2
Latest release: over 2 years ago - 106 downloads - 476 dependencies
stormgod/deepmaps-cpu latest

  • version: 5.7
Latest release: over 2 years ago - 67 downloads - 1,710 dependencies
maitner/example latest

  • version: 5.6-2
Latest release: over 2 years ago - 15 downloads - 418 dependencies
victoorramos/hiv_screening latest

  • version: 5.6-2
Latest release: over 2 years ago - 98 downloads - 218 dependencies
qdidiscoveryservices/pseudobulk 2.0.2

  • version: 5.4-1
Latest release: 11 months ago - 586 downloads - 1,112 dependencies
vnmd/afni_20.2.00 20200707

  • version: 5.4
Latest release: about 5 years ago - 30 downloads - 897 dependencies
yumyai/libmiome 0.0.1

Microbiome library

  • version: 5.6-2
Latest release: over 2 years ago - 55 downloads - 529 dependencies
dragonflyscience/dragonpy-18.04 2022-03-14

  • version: 5.5
Latest release: over 3 years ago - 17 downloads - 466 dependencies
tamaraperteghella/r4_hormonit latest

  • version: 5.6-2
Latest release: about 2 years ago - 26 downloads - 1,528 dependencies
dragonflyscience/dragonpy-20.04 2022-03-09

  • version: 5.5
Latest release: over 3 years ago - 25 downloads - 1,212 dependencies
sebimer/samba-v4-qiime2 2024.2

  • version: 5.6-2
Latest release: over 1 year ago - 117 downloads - 583 dependencies
ruben6um/satijalab_seurat_slingshot_muscat_harmony_glmgampoi_svglite latest

  • version: 5.4-1
Latest release: over 2 years ago - 44 downloads - 406 dependencies
emersonchao/dsc180b latest

  • version: 5.6-2
Latest release: over 2 years ago - 57 downloads - 2,266 dependencies
bixbeta/cluster_profiler v1

  • version: 5.4-1
Latest release: over 2 years ago - 17 downloads - 1,038 dependencies
ethill/qiime2 latest

docker container for qiime2

  • version: 5.6-2
Latest release: over 2 years ago - 18 downloads - 1,935 dependencies
gmillot/immcantation_v1.1 gitlab_v10.0

https://gitlab.pasteur.fr/gmillot/dockerfiles/-/tree/v10.0

  • version: 5.5
Latest release: over 2 years ago - 25 downloads - 1,438 dependencies
daltoncp/rstudio_celeganssinglecell 4.2_12

  • version: 5.7-1, 5.7
Latest release: almost 2 years ago - 224 downloads - 529 dependencies
peeyushweav/weav_c5_flask v1.0.22

  • version: 5.7-1
Latest release: almost 2 years ago - 3,030 downloads - 467 dependencies
weishwu/chipseeker 1.34.1

  • version: 5.7-1
Latest release: about 2 years ago - 50 downloads - 423 dependencies
dsouzd04/himc_zellkonverter 1.6.5

  • version: 5.6-2
Latest release: over 2 years ago - 63 downloads - 953 dependencies
gmillot/r_v4.1.2_ig_clustering_v1.1 gitlab_v9.7

https://gitlab.pasteur.fr/gmillot/dockerfiles/-/tree/v9.7

  • version: 5.6-2
Latest release: over 2 years ago - 31 downloads - 927 dependencies
codechenx/mice_aspergillus_infection_lung_project latest

  • version: 5.7-1
Latest release: over 2 years ago - 95 downloads - 427 dependencies
alkoenig08/harmonyseurat latest

Docker container built on satijalab/seurat with Broad Institute's "Harmony" package installed.

  • version: 5.7
Latest release: about 2 years ago - 79 downloads - 931 dependencies
andyvs/testimage 3.0

  • version: 5.7-1
Latest release: over 2 years ago - 40 downloads - 376 dependencies
viascientific/deseq2-docker 2.0

  • version: 5.7-1
Latest release: over 2 years ago - 111 downloads - 375 dependencies
13883956158/shinyproxy-r 4.2.2

  • version: 5.6-2
Latest release: over 2 years ago - 66 downloads - 312 dependencies
kbase/rast_base 1.9.1

  • version: 3.3
Latest release: over 3 years ago - 42 downloads - 2,027 dependencies
henryc101/epimodel 2.3.1

  • version: 5.6-2
Latest release: over 2 years ago - 18 downloads - 178 dependencies
apollodorus/genentech-jp v1

  • version: 5.6-2
Latest release: over 2 years ago - 45 downloads - 1,947 dependencies
payne6861/clutserprofiler v1.0.0

  • version: 5.6-2
Latest release: over 2 years ago - 12 downloads - 1,793 dependencies
bixbeta/pavian v1

  • version: 5.4-1
Latest release: over 2 years ago - 14 downloads - 388 dependencies
compbiocore/dscov_sct 20221201

  • version: 5.6-2
Latest release: over 2 years ago - 32 downloads - 1,031 dependencies
yosuketanigawa/rocker-geospatial-seurat latest

Docker image of Seurat installed on R Studio

  • version: 5.7-1
Latest release: over 2 years ago - 120 downloads - 512 dependencies
daltoncp/rstudio_celegansbulksequencing 4.2_3

  • version: 5.7-1
Latest release: almost 2 years ago - 52 downloads - 1,562 dependencies
compbiocore/lee_isg_erv 20230306

  • version: 5.7
Latest release: over 2 years ago - 13 downloads - 1,038 dependencies
jenfisher7/rstudio_sbae latest

  • version: 5.6-2
Latest release: over 2 years ago - 25 downloads - 1,604 dependencies
dragonflyscience/dragonforest-18.04 2022-03-14

  • version: 5.5
Latest release: over 3 years ago - 26 downloads - 2,328 dependencies
fischuu/cowpi latest

  • version: 5.6-2
Latest release: over 2 years ago - 18 downloads - 190 dependencies
ntobias85/abe_repo rbuild_reports_1.0.1

  • version: 5.6-2
Latest release: about 1 year ago - 60 downloads - 1,339 dependencies
shl198/rna_ppl latest

  • version: 5.6-2
Latest release: over 2 years ago - 23 downloads - 2,099 dependencies
bicore/gcs_10x_rnaseq_qc 4.2.0

  • version: 5.6-2
Latest release: over 2 years ago - 28 downloads - 1,454 dependencies
payne6861/stereonote_non_conda_clusterprofiler_enrichplot v1.0.1

stereonote_non_conda_clusterprofiler_enrichplot

  • version: 5.6-2
Latest release: over 2 years ago - 18 downloads - 1,689 dependencies
firriver/crvs latest

  • version: 5.7
Latest release: over 2 years ago - 39 downloads - 1,490 dependencies
mfsentma/rna latest

  • version: 5.6-2
Latest release: over 2 years ago - 12 downloads - 807 dependencies
mercury/nf_qc_scrna v2

  • version: 5.4-1
Latest release: about 2 years ago - 29 downloads - 548 dependencies
gmillot/r_v4.1.2_ig_clustering_v1.2 gitlab_v9.8

https://gitlab.pasteur.fr/gmillot/dockerfiles/-/tree/v9.8

  • version: 5.6-2
Latest release: over 2 years ago - 17 downloads - 928 dependencies
madhavsub/rstudio latestseurat

  • version: 5.7-1
Latest release: over 2 years ago - 36 downloads - 774 dependencies
danhumassmed/debrowser 1.0.1

Software for Bioinformatics pipelines DEBrowser

  • version: 5.6-2
Latest release: about 2 years ago - 32 downloads - 1,319 dependencies
compbiocore/jupyterhub-docker-images-jh_image 20230524

  • version: 5.7-1
Latest release: about 2 years ago - 101 downloads - 3,115 dependencies
weishwu/diffbind 3.6.5

  • version: 5.7
Latest release: over 2 years ago - 27 downloads - 1,507 dependencies
wlc27/dcanr v1

  • version: 5.6-2
Latest release: over 2 years ago - 63 downloads - 1,681 dependencies
chiajungl/seurat 4.4.0-4.4

  • version: 5.7-1
Latest release: about 1 year ago - 114 downloads - 1,249 dependencies
senbaikang/sieve_benchmark 0.2

Benchmarking environment for SIEVE (https://github.com/szczurek-lab/SIEVE_benchmark_pipeline)

  • version: 5.6-2
Latest release: over 2 years ago - 86 downloads - 699 dependencies
nfontrodona/peak_stat 0.0

  • version: 5.7-1
Latest release: about 2 years ago - 27 downloads - 689 dependencies
archang/seurat-zellk latest

  • version: 5.7
Latest release: about 2 years ago - 16 downloads - 935 dependencies
winuthayanon/seurat 4.3.0

  • version: 5.7-1
Latest release: about 2 years ago - 266 downloads - 2,660 dependencies