Ecosyste.ms: Docker

An open API service providing dependency metadata for docker images.

Package Usage : cran : SummarizedExperiment

Explore the latest package usage data for SummarizedExperiment in the cran ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 543
Total downloads: 2,567,533

More details on packages.ecosyste.ms - JSON

marcinkam/gdrshiny 0.20

  • version: 1.28.0
Latest release: about 1 year ago - 444 downloads - 1,082 dependencies
johnjun094/scgsea 0.3.11

DockerFile for benchmarking ssGSEA for single-cell RNA-seq

  • version: 1.22.0
Latest release: about 1 year ago - 388 downloads - 924 dependencies
sophiewebster/mhe latest

  • version: 1.30.2
Latest release: over 1 year ago - 345 downloads - 620 dependencies
mparikhbroad/mast_workflow 1.0.2

  • version: 1.30.1
Latest release: over 1 year ago - 461 downloads - 1,607 dependencies
jesusgf23/allenseurat latest

  • version: 1.28.0
Latest release: over 1 year ago - 328 downloads - 933 dependencies
datashield/rock-dolomite-xenon latest

  • version: 1.30.2
Latest release: over 1 year ago - 472 downloads - 1,410 dependencies
jorgeamaya/dada2_terra_iseq v1

  • version: 1.30.2
Latest release: over 1 year ago - 390 downloads - 967 dependencies
alesmaver/scramble2 latest

  • version: 1.16.1
Latest release: over 1 year ago - 478 downloads - 1,116 dependencies
chiajungl/smk-scrna-extra 4.3-7.30-4.3

  • version: 1.30.2
Latest release: over 1 year ago - 255 downloads - 1,384 dependencies
cmccornack/crmsc latest

  • version: 1.24.0
Latest release: over 1 year ago - 289 downloads - 1,476 dependencies
andrewatmp/testf latest

  • version: 1.28.0
Latest release: over 1 year ago - 316 downloads - 536 dependencies
jlund256/rna_variants latest

  • version: 1.20.0
Latest release: about 1 year ago - 288 downloads - 752 dependencies
ilariap/r_cnmops_exomedepth latest

Docker container containing panel-cnMops, cnMops and Exomedepth

  • version: 1.28.0
Latest release: almost 2 years ago - 195 downloads - 730 dependencies
eppicenter/mad4hatter latest

  • version: 1.30.2
Latest release: almost 2 years ago - 191 downloads - 739 dependencies
omicschef/rnaseqchef v1.0.9

RNAseqChef, an RNA-seq data controller highlighting gene expression features

  • version: 1.30.2
Latest release: about 1 year ago - 287 downloads - 1,420 dependencies
commander121/rmarkdown latest

  • version: 1.30.2
Latest release: almost 2 years ago - 229 downloads - 1,625 dependencies
jichanghan/scrna_seurat4_monocle2_wgcna_0213 06022023

  • version: 1.20.0
Latest release: over 1 year ago - 156 downloads - 1,173 dependencies
bac3/microbiome latest

16S rRNA gene meta-barcoding NGS data analysis app - microbioma batterico. App streamlit.

  • version: 1.28.0
Latest release: over 1 year ago - 134 downloads - 752 dependencies
qdidiscoveryservices/vcfcompare 1.0

  • version: 1.30.2
Latest release: over 1 year ago - 463 downloads - 784 dependencies
cjchen/tbtoolszone 2.0

  • version: 1.24.0
Latest release: over 1 year ago - 131 downloads - 789 dependencies
fallingstar10/hbsigrocker latest

  • version: 1.30.2
Latest release: over 1 year ago - 142 downloads - 1,223 dependencies
chiajungl/scrna-extra 4.3.0-1.4-4.3

  • version: 1.30.1
Latest release: over 1 year ago - 116 downloads - 1,350 dependencies
muhengliao/r_docker2 maching_learning

  • version: 1.20.0
Latest release: over 1 year ago - 115 downloads - 515 dependencies
sviatsidorov/r_processor 0.4

Analysis of alternative isoforms of human TFs in R

  • version: 1.28.0
Latest release: about 1 year ago - 110 downloads - 550 dependencies
sgiamberardinorti/dge_analysis 202304171546_x86_64

  • version: 1.28.0
Latest release: over 1 year ago - 102 downloads - 1,881 dependencies
pipecraft/vsearch_dada2 0

  • version: 1.30.2
Latest release: about 1 year ago - 153 downloads - 785 dependencies
cjchen/scauclass_2023 1.0

  • version: 1.30.2
Latest release: over 1 year ago - 100 downloads - 393 dependencies
shengqh/cqs_smallrnaseq latest

  • version: 1.30.2
Latest release: 10 months ago - 133 downloads - 1,416 dependencies
sridnona/r4.2.0 v1

  • version: 1.28.0
Latest release: over 1 year ago - 84 downloads - 832 dependencies
gesiscss/binder-r2d-g5b5b759-nimh-2dhbcc-2dhbcc-5fsnrnaseq-5fsgacc-2ddlpfc-a0409e f0f54e1008536ab644e4e62ee88918b529b8555d

  • version: 1.24.0
Latest release: almost 2 years ago - 113 downloads - 2,762 dependencies
lroser/databricksbio latest

  • version: 1.30.2
Latest release: over 1 year ago - 79 downloads - 975 dependencies
weizhoujp/rchtc 4.3.0

  • version: 1.30.2
Latest release: over 1 year ago - 141 downloads - 738 dependencies
globusgenomics/picrust 1.0

  • version: 1.24.0
Latest release: almost 2 years ago - 77 downloads - 595 dependencies
tariship/dev_sync_directories latest

  • version: 1.28.0
Latest release: about 1 year ago - 112 downloads - 421 dependencies
nciccbr/ccbr_r_4.3.0 v1

  • version: 1.30.1
Latest release: over 1 year ago - 83 downloads - 679 dependencies
sviatsidorov/granie_analysis 0.1

Analysis of gliogenesis in a mouse model using GRaNIE

  • version: 1.28.0
Latest release: over 1 year ago - 70 downloads - 290 dependencies
jpdodson/dsrna_docker latest

  • version: 1.28.0
Latest release: almost 2 years ago - 69 downloads - 208 dependencies
nathanprovin/cellcom 1.2.2

  • version: 1.30.2
Latest release: over 1 year ago - 82 downloads - 596 dependencies
raghukirannavipoint/aldex2 mar23

  • version: 1.24.0
Latest release: over 1 year ago - 70 downloads - 1,548 dependencies
nciccbr/ccbr_fraser_1.10.2 latest

  • version: 1.20.0
Latest release: almost 2 years ago - 64 downloads - 293 dependencies
jafoltz/sc_python 8

  • version: 1.24.0
Latest release: over 1 year ago - 63 downloads - 438 dependencies
almurphy/mungesumstats latest

  • version: 1.31.1
Latest release: over 1 year ago - 63 downloads - 265 dependencies
andrewatmp/qiime_unzip latest

  • version: 1.28.0
Latest release: over 1 year ago - 93 downloads - 598 dependencies
broadcptacdev/activedriver_mimp latest

  • version: 1.16.1
Latest release: over 1 year ago - 60 downloads - 374 dependencies
dhspence/docker-rstudio-python latest

  • version: 1.28.0
Latest release: over 1 year ago - 60 downloads - 272 dependencies
gru4/scan2workinghg38 latest

  • version: 1.24.0
Latest release: over 1 year ago - 59 downloads - 776 dependencies
indraniel/chip-pipeline-annotation v1

  • version: 1.28.0
Latest release: over 1 year ago - 168 downloads - 218 dependencies
stefanucciluca/tregopathies latest

  • version: 1.28.0
Latest release: over 1 year ago - 72 downloads - 488 dependencies
biohpc/scrna2023 2.0.1

  • version: 1.28.0
Latest release: over 1 year ago - 92 downloads - 1,233 dependencies
gru4/scan2fixedhg38 latest

  • version: 1.24.0
Latest release: over 1 year ago - 55 downloads - 777 dependencies
etycksen/sc_deluxe 0.2

  • version: 1.28.0
Latest release: about 1 year ago - 249 downloads - 757 dependencies
gyusikhwang/tgs v1

  • version: 1.24.0
Latest release: over 1 year ago - 50 downloads - 1,095 dependencies
alexsickler/open-pedcan latest

  • version: 1.16.1
Latest release: almost 2 years ago - 50 downloads - 864 dependencies
broadcptac/panoply_so_nmf_sankey_report DEV

  • version: 1.16.1
Latest release: over 1 year ago - 54 downloads - 383 dependencies
lorentzb/srs 2.0

  • version: 1.12.0
Latest release: over 1 year ago - 45 downloads - 269 dependencies
mshriver01/share_task_archr latest

  • version: 1.24.0
Latest release: over 1 year ago - 46 downloads - 1,364 dependencies
proteogenomics/missing-value-imputation latest

  • version: 1.26.1
Latest release: over 1 year ago - 50 downloads - 215 dependencies
evafastpf/commot 0.1

  • version: 1.16.1
Latest release: over 1 year ago - 48 downloads - 1,877 dependencies
mknudson/share_task_cell_annotation mei-cell-annotation

  • version: 1.24.0
Latest release: about 1 year ago - 42 downloads - 316 dependencies
brusconi/seurat latest

  • version: 1.30.2
Latest release: over 1 year ago - 67 downloads - 536 dependencies
biomehub/encodestatsbase 0.0.5

Basic docker image used as a base for EncodeStats.

  • version: 1.30.2
Latest release: about 1 year ago - 50 downloads - 853 dependencies
omicschef/epigenomechef v1.1.3

  • version: 1.30.2
Latest release: 11 months ago - 113 downloads - 1,066 dependencies
nfancy/scflow dev

  • version: 1.28.0
Latest release: over 1 year ago - 44 downloads - 778 dependencies
jlphillips/csci 2024-Spring

MTSU Department of Computer Science Stack

  • version: 1.28.0, 1.30.2
Latest release: 11 months ago - 432 downloads - 3,721 dependencies
fluentin55/singlecell_docker 1.2

  • version: 1.28.0
Latest release: over 1 year ago - 40 downloads - 452 dependencies
alexthiery/archr_seurat_signac_mega 3.2

  • version: 1.24.0
Latest release: about 1 year ago - 70 downloads - 441 dependencies
andrewsg/archr macs2

  • version: 1.30.2
Latest release: over 1 year ago - 51 downloads - 1,356 dependencies
jorgeamaya/ci_barcode_terra_dada2_iseq v1

  • version: 1.30.2
Latest release: over 1 year ago - 36 downloads - 483 dependencies
jonasmrr/scrnaseq-pipeline latest

  • version: 1.28.0
Latest release: over 1 year ago - 35 downloads - 356 dependencies
wyangwu/r4.1.2 latest

  • version: 1.24.0
Latest release: over 1 year ago - 67 downloads - 827 dependencies
bioxfu/xseurat2 latest

  • version: 1.28.0
Latest release: almost 2 years ago - 36 downloads - 982 dependencies
robertplayer/scidap-genelists v3.0.0

  • version: 1.24.0
Latest release: about 1 year ago - 74 downloads - 609 dependencies
koki/tensor-projects-fly 20230516

  • version: 1.30.1
Latest release: over 1 year ago - 40 downloads - 222 dependencies
alexthiery/enhancer_annotation_and_motif_analysis latest

  • version: 1.20.0
Latest release: over 1 year ago - 35 downloads - 210 dependencies
gevrony/hidef-seq 1.2

  • version: 1.24.0
Latest release: about 1 year ago - 65 downloads - 1,205 dependencies
arnstrm2/genespace 1.1.4

  • version: 1.28.0
Latest release: over 1 year ago - 40 downloads - 294 dependencies
chunjiesamliu/scmocha latest

  • version: 1.30.2
Latest release: over 1 year ago - 43 downloads - 1,258 dependencies
srynobio/rna latest

  • version: 1.28.0
Latest release: over 1 year ago - 31 downloads - 269 dependencies
paulotaugc/16scan-metagenomics v2

  • version: 1.24.0
Latest release: over 1 year ago - 32 downloads - 776 dependencies
denglab/vpfkit latest

  • version: 1.26.1
Latest release: almost 2 years ago - 36 downloads - 632 dependencies
mskilab/hetpileups latest

  • version: 1.20.0
Latest release: about 1 year ago - 29 downloads - 246 dependencies
giusmar/quarto 1.3.433d

  • version: 1.28.0
Latest release: about 1 year ago - 83 downloads - 283 dependencies
mengchen18/xcmsviewer_process latest

  • version: 1.28.0
Latest release: over 1 year ago - 32 downloads - 1,355 dependencies
scwatts/bolt_gpgr 0.1.0

  • version: 1.24.0
Latest release: about 1 year ago - 30 downloads - 337 dependencies
mfilipuz/r_v423 23.05.09

  • version: 1.28.0
Latest release: over 1 year ago - 28 downloads - 208 dependencies
fgualdr/env_norm_gr_idr latest

  • version: 1.28.0
Latest release: over 1 year ago - 29 downloads - 506 dependencies
yosuketanigawa/rstudio_yt latest

  • version: 1.28.0
Latest release: over 1 year ago - 38 downloads - 2,089 dependencies
chiajungl/scrna 4.3.0-5.0

  • version: 1.30.1
Latest release: 11 months ago - 46 downloads - 1,312 dependencies
bianca7/deseq2 latest

  • version: 1.28.0
Latest release: over 1 year ago - 27 downloads - 1,263 dependencies
repbioinfo/transformgampoi latest

  • version: 1.24.0
Latest release: about 1 year ago - 28 downloads - 1,664 dependencies
bioedge/edge_24_1_ubuntu18 20231115

  • version: 1.28.0, 1.12.0
Latest release: about 1 year ago - 40 downloads - 2,569 dependencies
jingxin/terrascpipe v0

  • version: 1.24.0
Latest release: almost 2 years ago - 25 downloads - 2,467 dependencies
skchronicles/genome-seek_trim_map latest

Official docker image for trimming and alignment with genome-seek

  • version: 1.28.0
Latest release: over 1 year ago - 36 downloads - 1,367 dependencies
qdidiscoveryservices/diffbind latest

  • version: 1.30.2
Latest release: over 1 year ago - 26 downloads - 526 dependencies
viascientific/rstudio-app-isee 1.0

  • version: 1.20.0
Latest release: over 1 year ago - 26 downloads - 897 dependencies
jackiezhuqi/bio-rstudio latest

  • version: 1.28.0
Latest release: over 1 year ago - 25 downloads - 1,158 dependencies
papaemmelab/allspice-allcatchr v0.1.0

  • version: 1.28.0
Latest release: almost 2 years ago - 29 downloads - 931 dependencies