Ecosyste.ms: Docker

An open API service providing dependency metadata for docker images.

Package Usage : cran : SummarizedExperiment

Explore the latest package usage data for SummarizedExperiment in the cran ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 543
Total downloads: 2,567,533

More details on packages.ecosyste.ms - JSON

hoonbiolab/hmftools_linx v1.23.1

  • version: 1.28.0
Latest release: almost 2 years ago - 10 downloads - 988 dependencies
gesiscss/binder-kozo2-2dsakigakemtg2019-214397 c9d150b74c2eb09683e7fadd99703bda92c291cd

  • version: 1.16.1
Latest release: almost 5 years ago - 8 downloads - 2,128 dependencies
yosuketanigawa/rocker-geospatial-seurat latest

Docker image of Seurat installed on R Studio

  • version: 1.26.1
Latest release: over 1 year ago - 75 downloads - 512 dependencies
daltoncp/rstudio_celegansbulksequencing 4.2_3

  • version: 1.28.0
Latest release: over 1 year ago - 15 downloads - 1,562 dependencies
compbiocore/lee_isg_erv 20230306

  • version: 1.28.0
Latest release: over 1 year ago - 8 downloads - 1,038 dependencies
yinxiu/variantalker v2.0

NextFlow pipeline to functionally annotate DNA variants in VCF files

  • version: 1.28.0, 1.30.1
Latest release: over 1 year ago - 119 downloads - 1,068 dependencies
srynobio/diagnostic_rnaseq latest

  • version: 1.30.2
Latest release: over 1 year ago - 108 downloads - 1,441 dependencies
jenfisher7/rstudio_sbae latest

  • version: 1.28.0
Latest release: almost 2 years ago - 8 downloads - 1,604 dependencies
fabianegli/scp-recommendations-2022 1.0

  • version: 1.28.0
Latest release: over 1 year ago - 12 downloads - 1,328 dependencies
hoonbiolab/hmftools_cnv v3.8.4

  • version: 1.28.0, 1.30.1
Latest release: over 1 year ago - 13 downloads - 985 dependencies
kumalpha/qiime2-core latest

  • version: 1.20.0
Latest release: almost 2 years ago - 10 downloads - 420 dependencies
mziemann/meth_analysis latest

Based on BioC release 3.14, this image is designed for analysis of infinium methylation array data

  • version: 1.24.0
Latest release: over 1 year ago - 8 downloads - 1,347 dependencies
dabbleofdevops/r-datascience 4.2.2

  • version: 1.28.0
Latest release: over 1 year ago - 34 downloads - 816 dependencies
crukmi/nas-app latest

  • version: 1.20.0
Latest release: about 2 years ago - 11 downloads - 701 dependencies
ntobias85/abe_repo degust_build

  • version: 1.29.1, 1.14.1
Latest release: over 1 year ago - 6 downloads - 1,339 dependencies
crukmi/liana_tensor2 0.1.9

  • version: 1.28.0
Latest release: almost 2 years ago - 9 downloads - 684 dependencies
madhu99/sb6 latest

  • version: 1.28.0
Latest release: almost 2 years ago - 7 downloads - 666 dependencies
hoonbiolab/hmftools_sv v.2.13.2

  • version: 1.28.0
Latest release: almost 2 years ago - 9 downloads - 856 dependencies
brianyee/rnaseq snakemake_1.0.0

  • version: 1.24.0
Latest release: over 1 year ago - 38 downloads - 2,387 dependencies
jmonlong/terra-rstudio-custom 0.0.1

  • version: 1.28.0
Latest release: almost 2 years ago - 7 downloads - 1,616 dependencies
shl198/rna_ppl latest

  • version: 1.26.1
Latest release: almost 2 years ago - 20 downloads - 2,099 dependencies
jordanwhitlock/setbp1_manuscript_panda_1.0.1 latest

  • version: 1.28.0
Latest release: over 1 year ago - 35 downloads - 1,720 dependencies
bicore/gcs_10x_rnaseq_qc 4.2.0

  • version: 1.26.1
Latest release: almost 2 years ago - 8 downloads - 1,454 dependencies
mdivr/chicago v2

  • version: 1.28.0
Latest release: over 1 year ago - 29 downloads - 645 dependencies
firriver/crvs latest

  • version: 1.24.0
Latest release: over 1 year ago - 8 downloads - 1,490 dependencies
mfsentma/rna latest

  • version: 1.24.0
Latest release: over 1 year ago - 7 downloads - 807 dependencies
gmillot/r_v4.1.2_ig_clustering_v1.2 gitlab_v9.8

https://gitlab.pasteur.fr/gmillot/dockerfiles/-/tree/v9.8

  • version: 1.24.0
Latest release: over 1 year ago - 10 downloads - 928 dependencies
ucigenomics/spatiallibd latest

  • version: 1.28.0
Latest release: almost 2 years ago - 17 downloads - 2,006 dependencies
danhumassmed/debrowser 1.0.1

Software for Bioinformatics pipelines DEBrowser

  • version: 1.28.0
Latest release: over 1 year ago - 25 downloads - 1,319 dependencies
pl92297/rtracklayer latest

  • version: 1.20.0
Latest release: almost 2 years ago - 15 downloads - 520 dependencies
samplix/droplet-viewer-internal latest

  • version: 1.22.0
Latest release: almost 2 years ago - 10 downloads - 568 dependencies
williamwu7/repac v.99

  • version: 1.28.0
Latest release: over 1 year ago - 12 downloads - 628 dependencies
compbiocore/jupyterhub-docker-images-jh_image 20230524

  • version: 1.28.0
Latest release: over 1 year ago - 11 downloads - 3,115 dependencies
weishwu/diffbind 3.6.5

  • version: 1.26.1
Latest release: almost 2 years ago - 10 downloads - 1,507 dependencies
wlc27/dcanr v1

  • version: 1.28.0
Latest release: almost 2 years ago - 10 downloads - 1,681 dependencies
chiajungl/seurat 4.3.0-5.0

  • version: 1.30.1
Latest release: 11 months ago - 17 downloads - 1,249 dependencies
sharvaribatchx/dada2-filter-learn-errors latest

  • version: 1.24.0
Latest release: over 1 year ago - 10 downloads - 536 dependencies
qx658/eas-shiny latest

  • version: 1.28.0
Latest release: almost 2 years ago - 10 downloads - 1,103 dependencies
fgualdr/env_perm_motifs latest

  • version: 1.28.0
Latest release: over 1 year ago - 10 downloads - 584 dependencies
fgualdr/envr_txdb latest

  • version: 1.28.0
Latest release: over 1 year ago - 10 downloads - 276 dependencies
thesushantpatil/arriba_v2.4.0_threads32_amd64 latest

  • version: 1.16.1
Latest release: over 1 year ago - 10 downloads - 310 dependencies
yaobio/archr-4g latest

Docker images for ArchR (Analysis of Regulatory Chromatin in R)

  • version: 1.24.0
Latest release: over 1 year ago - 11 downloads - 643 dependencies
ericsalomaki/mirna 071723

  • version: 1.24.0
Latest release: over 1 year ago - 10 downloads - 1,834 dependencies
nucleoz/cnvplotr3 latest

  • version: 1.8.1
Latest release: over 1 year ago - 10 downloads - 478 dependencies
archang/seurat-zellk latest

  • version: 1.28.0
Latest release: over 1 year ago - 9 downloads - 935 dependencies
winuthayanon/seurat 4.3.0

  • version: 1.28.0
Latest release: over 1 year ago - 15 downloads - 2,660 dependencies
hbadrane/fungap version3

  • version: 1.16.0
Latest release: about 1 year ago - 44 downloads - 479 dependencies
tamaraperteghella/r4_gencode latest

  • version: 1.24.0
Latest release: over 1 year ago - 8 downloads - 1,460 dependencies
matzieb/shiny-4.0.3-seurat4-spatial latest

  • version: 1.20.0
Latest release: over 1 year ago - 9 downloads - 1,061 dependencies
brianyee/cropseq-essentials 1.0.0

  • version: 1.24.0
Latest release: over 1 year ago - 9 downloads - 2,274 dependencies
benolson/r_dada2_for_ris latest

  • version: 1.28.0
Latest release: over 1 year ago - 9 downloads - 657 dependencies
chlazaris/dge_env 0.1

  • version: 1.24.0
Latest release: over 1 year ago - 9 downloads - 320 dependencies
cjchen/gxuclass 1.0

  • version: 1.30.2
Latest release: over 1 year ago - 12 downloads - 657 dependencies
smemane20/error_thres_amd_64 latest

  • version: 1.30.0
Latest release: over 1 year ago - 10 downloads - 618 dependencies
nilesh0404/st_visualizer m1_0.1.2

  • version: 1.30.2
Latest release: about 1 year ago - 18 downloads - 1,422 dependencies
khoulaha/shatterseek v1.0.0

  • version: 1.20.0
Latest release: almost 2 years ago - 9 downloads - 664 dependencies
wesdorp/aws_dna latest

  • version: 1.28.0
Latest release: over 1 year ago - 9 downloads - 563 dependencies
apoorvababu/scviewerlite latest

Light version of SeuratViewer, an R Shiny website for viewing single cell RNA-Seq data

  • version: 1.22.0
Latest release: almost 2 years ago - 9 downloads - 1,554 dependencies
tercen/tercen-studio-flowsuite 3.15-6

  • version: 1.26.1
Latest release: over 1 year ago - 10 downloads - 1,885 dependencies
preethiilumina/diffbind 1.5

fixed genome name

  • version: 1.28.0
Latest release: 9 months ago - 155 downloads - 626 dependencies
cwong23/stx_env latest

Environment for spatial pipeline

  • version: 1.28.0
Latest release: over 1 year ago - 9 downloads - 1,606 dependencies
louisk92/spapros_scpnmf v1.0

  • version: 1.30.2
Latest release: over 1 year ago - 10 downloads - 1,422 dependencies
rayne233/lcms latest

  • version: 1.24.0
Latest release: over 1 year ago - 11 downloads - 658 dependencies
fallingstar10/gmadeomicsrocker tiny

  • version: 1.30.2
Latest release: 8 months ago - 51 downloads - 1,224 dependencies
phenomedb/phenomedb-api-npc latest

  • version: 1.28.0
Latest release: over 1 year ago - 10 downloads - 1,310 dependencies
mengchen18/mqc_collab 0.3.10

  • version: 1.28.0
Latest release: almost 2 years ago - 13 downloads - 976 dependencies
koki/guidedpls-experiments 20230502

  • version: 1.30.0
Latest release: over 1 year ago - 10 downloads - 1,263 dependencies
tomasgomes/nextflow_kallisto_sc 0.3

  • version: 1.24.0
Latest release: 12 months ago - 39 downloads - 1,194 dependencies
gesiscss/binder-r2d-g5b5b759-natpombubpa-2damptk-5f1-2e5-2e4-904cbc b7b2357f6670556e582166033b738136fa103199

  • version: 1.28.0
Latest release: over 1 year ago - 22 downloads - 1,700 dependencies
bbeacosta/sctype latest

  • version: 1.28.0
Latest release: over 1 year ago - 9 downloads - 1,391 dependencies
jysgro/tidytranstriptomics_arm64 latest

Based on https://github.com/stemangiola/bioc2021_tidytranscriptomics/

  • version: 1.29.1
Latest release: over 1 year ago - 8 downloads - 1,266 dependencies
buddej/scshc 0.1.0

  • version: 1.30.1
Latest release: over 1 year ago - 8 downloads - 950 dependencies
cbgr/cager261 1.4

Container for the CAGEr tool version 2.6.1.

  • version: 1.30.2
Latest release: 9 months ago - 22 downloads - 1,356 dependencies
weizhoujp/r-chtc-v1 latest

  • version: 1.30.1
Latest release: over 1 year ago - 5 downloads - 724 dependencies
timothystephens/genotype_samples 0.0.1

  • version: 1.28.0
Latest release: over 1 year ago - 7 downloads - 469 dependencies
trust1/jmml latest

JMML classifier

  • version: 1.24.0
Latest release: about 2 years ago - 8 downloads - 658 dependencies
altyn745/txsim latest

  • version: 1.30.2
Latest release: over 1 year ago - 14 downloads - 1,684 dependencies
leoschmutterer/regularity v1.1

  • version: 1.24.0
Latest release: over 1 year ago - 9 downloads - 349 dependencies
suimye/cage_box latest

  • version: 1.28.0
Latest release: over 1 year ago - 7 downloads - 698 dependencies
mapostolides/test12345 latest

  • version: 1.16.1
Latest release: over 1 year ago - 8 downloads - 566 dependencies
skchronicles/flair v0.1.0

Docker image for FLAIR: Full-Length Alternative Isoform analysis of RNA

  • version: 1.24.0
Latest release: over 1 year ago - 9 downloads - 729 dependencies
fgualdr/env_motifs latest

  • version: 1.28.0
Latest release: over 1 year ago - 5 downloads - 544 dependencies
kuangda/pc12 latest

  • version: 1.26.1
Latest release: almost 2 years ago - 6 downloads - 1,326 dependencies
bigomics/omicsplayground master

Self-service analytics for big omics data

  • version: 1.24.0
Latest release: 12 months ago - 9,749 downloads - 1,551 dependencies
scao/microsec 0.0.1

  • version: 1.28.0
Latest release: almost 2 years ago - 5,547 downloads - 507 dependencies
ljanin/qsub-to-basespace 4.2.0

  • version: 1.8.1
Latest release: over 1 year ago - 827 downloads - 1,228 dependencies
abelean/seurat_desctools 4.1.0

  • version: 1.24.0
Latest release: almost 2 years ago - 605 downloads - 1,090 dependencies
bumproo/rnaseqclass23 latest

  • version: 1.30.1
Latest release: over 1 year ago - 413 downloads - 904 dependencies
bigomics/omicsplayground-base ub2204_v2

  • version: 1.24.0
Latest release: about 1 year ago - 1,389 downloads - 1,536 dependencies
marcinkam/gdrshiny 0.20

  • version: 1.28.0
Latest release: about 1 year ago - 444 downloads - 1,082 dependencies