Ecosyste.ms: Docker

An open API service providing dependency metadata for docker images.

Package Usage : cran : SummarizedExperiment

Explore the latest package usage data for SummarizedExperiment in the cran ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 543
Total downloads: 2,567,533

More details on packages.ecosyste.ms - JSON

mtorresm55/r_env_4_1_0 v1.0

  • version: 1.24.0
Latest release: almost 2 years ago - 14 downloads - 354 dependencies
qdidiscoveryservices/cellranger7.1.0_py3_r4 latest

  • version: 1.24.0
Latest release: almost 2 years ago - 12 downloads - 1,029 dependencies
mattjmeier/r-odaf-hc latest

Under Development. Containerized version of the R-ODAF Health Canada Pipeline.

  • version: 1.28.0
Latest release: almost 2 years ago - 13 downloads - 598 dependencies
luisas/r_sc.simg latest

  • version: 1.16.1
Latest release: about 4 years ago - 12 downloads - 260 dependencies
crpeters/r-methylkit 4.2.1

  • version: 1.28.0
Latest release: almost 2 years ago - 12 downloads - 383 dependencies
bioconductor/ismb.osca 124cbc0

  • version: 1.30.2
Latest release: over 1 year ago - 299 downloads - 1,422 dependencies
gesiscss/binder-mortonjt-2dq2stats-2dworkshops-912d21 82c8b562545acab37a854f097c33806fa7c2a4b3

  • version: 1.12.0
Latest release: over 3 years ago - 11 downloads - 1,679 dependencies
jpsmith5/rpipe 0.3.1

  • version: 1.28.0
Latest release: almost 2 years ago - 12 downloads - 262 dependencies
veitveit/maxquantworkflow dev

  • version: 1.20.0
Latest release: almost 4 years ago - 12 downloads - 351 dependencies
qdidiscoveryservices/seurat_tidyverse latest

  • version: 1.20.0
Latest release: over 3 years ago - 12 downloads - 435 dependencies
alexthiery/seurat-monocle 0.1

  • version: 1.20.0
Latest release: almost 2 years ago - 27 downloads - 1,062 dependencies
alexthiery/archr 3.1

  • version: 1.24.0
Latest release: over 1 year ago - 133 downloads - 819 dependencies
hway/cellxgene_vip latest

  • version: 1.16.1
Latest release: almost 2 years ago - 13 downloads - 2,125 dependencies
njjai/genebasis latest

  • version: 1.28.0
Latest release: over 1 year ago - 28 downloads - 789 dependencies
gesiscss/binder-r2d-g5b5b759-fraunhofer-2ditmp-2dalister-26fdaf 11bce8bee1e1b0252d2ee5356a32b5b44c0dff4d

  • version: 1.16.0
Latest release: over 1 year ago - 31 downloads - 1,853 dependencies
abelean/seurat_azimuth 5b

  • version: 1.24.0
Latest release: over 1 year ago - 343 downloads - 1,141 dependencies
markataylor/r_yufree v1.0.0

  • version: 1.28.0
Latest release: almost 2 years ago - 14 downloads - 1,514 dependencies
sparktx/gviz 1.40.1

  • version: 1.26.1
Latest release: almost 2 years ago - 11 downloads - 288 dependencies
adriansegura99/geneci_extract-data_dream4-expgs 2.0.0

  • version: 1.24.0
Latest release: over 1 year ago - 13 downloads - 328 dependencies
denglab/vpfkit_base latest

  • version: 1.28.0
Latest release: over 1 year ago - 13 downloads - 1,089 dependencies
shiramaty/qiime2-sratools latest

  • version: 1.24.0
Latest release: almost 2 years ago - 11 downloads - 319 dependencies
qdidiscoveryservices/pipeline_docker-r_and_bioconductor latest

  • version: 1.16.1
Latest release: about 4 years ago - 10 downloads - 431 dependencies
chriswyatt/genespaces latest

  • version: 1.24.0
Latest release: about 2 years ago - 11 downloads - 221 dependencies
tercen/normalise_cytof_operator latest

  • version: 1.26.1
Latest release: about 2 years ago - 12 downloads - 655 dependencies
bixbeta/czid v3

  • version: 1.20.0
Latest release: over 1 year ago - 12 downloads - 421 dependencies
edkang0925/diffutr latest

  • version: 1.28.0
Latest release: over 1 year ago - 14 downloads - 532 dependencies
vgonzenbach/rstudio 4.2

  • version: 1.28.0
Latest release: almost 2 years ago - 11 downloads - 528 dependencies
bakeronit/rstudio_hpc_cancer 0.1.3

rocker-rstudio with some R packages installed in cancer genomic analysis

  • version: 1.30.2, 1.28.0
Latest release: about 1 year ago - 33 downloads - 1,150 dependencies
mattjmeier/r-odaf-hc-base latest

  • version: 1.28.0
Latest release: almost 2 years ago - 10 downloads - 598 dependencies
philipp02/pathway v1

  • version: 1.29.1
Latest release: almost 2 years ago - 10 downloads - 345 dependencies
stormgod/deepmaps-cpu latest

  • version: 1.28.0
Latest release: over 1 year ago - 31 downloads - 1,710 dependencies
sameetmehta/docker_report_apptainer devel

  • version: 1.30.1
Latest release: over 1 year ago - 9 downloads - 352 dependencies
am5747/methylation latest

  • version: 1.28.0
Latest release: almost 2 years ago - 10 downloads - 290 dependencies
weishwu/planet 12052022

  • version: 1.26.1
Latest release: almost 2 years ago - 9 downloads - 341 dependencies
sheddn/csaw latest

  • version: 1.28.0
Latest release: almost 2 years ago - 10 downloads - 93 dependencies
tercen/tercen_studio_flowsuite 0.0.1

  • version: 1.26.1
Latest release: over 2 years ago - 12 downloads - 574 dependencies
apollodorus/polyglot v1

  • version: 1.28.0
Latest release: almost 2 years ago - 10 downloads - 428 dependencies
qdidiscoveryservices/pseudobulk 1.1

  • version: 1.20.0
Latest release: over 2 years ago - 10 downloads - 1,112 dependencies
weishwu/nanomethphase 1.2.0

  • version: 1.18.1
Latest release: almost 2 years ago - 31 downloads - 1,274 dependencies
gpato/lacen-app 2.4.0

  • version: 1.24.0
Latest release: 12 months ago - 58 downloads - 801 dependencies
hoonbiolab/hmftools_purple v3.7.2

  • version: 1.28.0
Latest release: almost 2 years ago - 12 downloads - 270 dependencies
crukmi/liana 0.1.9

  • version: 1.28.0
Latest release: almost 2 years ago - 18 downloads - 287 dependencies
hoonbiolab/hmftools_snv v3.2.2

  • version: 1.28.0
Latest release: almost 2 years ago - 11 downloads - 271 dependencies
breezykermo/gvis latest

  • version: 1.16.1
Latest release: over 4 years ago - 9 downloads - 1,619 dependencies
tamaraperteghella/r4_hormonit latest

  • version: 1.24.0
Latest release: over 1 year ago - 13 downloads - 1,528 dependencies
msgao/deseq2 latest

  • version: 1.24.0
Latest release: almost 2 years ago - 10 downloads - 384 dependencies
hoonbiolab/testbattenberg v1.0

  • version: 1.16.1
Latest release: almost 2 years ago - 11 downloads - 325 dependencies
elynrfw/gerald-test latest

  • version: 1.28.0
Latest release: almost 2 years ago - 10 downloads - 349 dependencies
sebimer/samba-v4-qiime2 2022.11

  • version: 1.28.0
Latest release: almost 2 years ago - 49 downloads - 583 dependencies
almahmoud/terra-jupyter bioc

  • version: 1.26.1
Latest release: almost 2 years ago - 9 downloads - 2,217 dependencies
felixschlesinger/assign_types v0.2

  • version: 1.24.0
Latest release: over 1 year ago - 240 downloads - 503 dependencies
vegesnam/metaboanalyst 11thApr

  • version: 1.28.0
Latest release: over 1 year ago - 34 downloads - 358 dependencies
kdgosik/main-gitpod latest

  • version: 1.28.0
Latest release: over 1 year ago - 49 downloads - 1,820 dependencies
ruben6um/satijalab_seurat_slingshot_muscat_harmony_glmgampoi_svglite latest

  • version: 1.20.0
Latest release: almost 2 years ago - 8 downloads - 406 dependencies
emersonchao/dsc180b latest

  • version: 1.28.0
Latest release: almost 2 years ago - 50 downloads - 2,266 dependencies
bixbeta/cluster_profiler v1

  • version: 1.20.0
Latest release: almost 2 years ago - 8 downloads - 1,038 dependencies
brianyee/celligrate 55ba642

  • version: 1.24.0
Latest release: almost 2 years ago - 9 downloads - 2,522 dependencies
jieliu4wustl/wustl v0.1_20230907

  • version: 1.16.1, 1.28.0
Latest release: about 1 year ago - 4,483 downloads - 1,124 dependencies
ethill/qiime2 latest

docker container for qiime2

  • version: 1.28.0
Latest release: almost 2 years ago - 8 downloads - 1,935 dependencies
brianyee/r-essentials 1.0.0

  • version: 1.24.0
Latest release: over 1 year ago - 8 downloads - 1,682 dependencies
gmillot/immcantation_v1.1 gitlab_v10.0

  • version: 1.20.0
Latest release: over 1 year ago - 13 downloads - 1,438 dependencies
daltoncp/rstudio_celeganssinglecell 4.2_12

  • version: 1.28.0, 1.30.2
Latest release: about 1 year ago - 60 downloads - 529 dependencies
aokad/recount3 1.8.0

  • version: 1.28.0
Latest release: almost 2 years ago - 9 downloads - 121 dependencies
chaunceyzhou/awesome_rnaseq v1.3

  • version: 1.16.1
Latest release: about 1 year ago - 16 downloads - 465 dependencies
koki/seurat2isee 20221125

  • version: 1.28.0
Latest release: almost 2 years ago - 10 downloads - 554 dependencies
weishwu/chipseeker 1.34.1

  • version: 1.28.0
Latest release: over 1 year ago - 34 downloads - 423 dependencies
dsouzd04/himc_zellkonverter 1.6.5

  • version: 1.26.1
Latest release: almost 2 years ago - 25 downloads - 953 dependencies
duclare123/vizcnv_dev latest

Visualization tool for WGS analysis

  • version: 1.28.0
Latest release: over 1 year ago - 15 downloads - 920 dependencies
gmillot/r_v4.1.2_ig_clustering_v1.1 gitlab_v9.7

https://gitlab.pasteur.fr/gmillot/dockerfiles/-/tree/v9.7

  • version: 1.24.0
Latest release: almost 2 years ago - 24 downloads - 927 dependencies
codechenx/mice_aspergillus_infection_lung_project latest

  • version: 1.28.0
Latest release: over 1 year ago - 11 downloads - 427 dependencies
alexeymakhonin/bioinf-2022-notebook latest

  • version: 1.28.0
Latest release: almost 2 years ago - 9 downloads - 213 dependencies
jwcarlson/genespace latest

  • version: 1.30.1
Latest release: over 1 year ago - 46 downloads - 212 dependencies
fauzul/fuseq_wes_hg19 1.0

  • version: 1.24.0
Latest release: over 1 year ago - 9 downloads - 126 dependencies
alkoenig08/harmonyseurat latest

Docker container built on satijalab/seurat with Broad Institute's "Harmony" package installed.

  • version: 1.28.0
Latest release: over 1 year ago - 15 downloads - 931 dependencies
andyvs/testimage 3.0

  • version: 1.28.0
Latest release: over 1 year ago - 11 downloads - 376 dependencies
crukmi/liana_tensor 0.1.9

  • version: 1.28.0
Latest release: almost 2 years ago - 9 downloads - 467 dependencies
viascientific/deseq2-docker 2.0

  • version: 1.28.0
Latest release: over 1 year ago - 36 downloads - 375 dependencies
neutronstar21/rocker_tidyverse_2023_05_05_v1 latest

  • version: 1.30.1
Latest release: over 1 year ago - 8 downloads - 266 dependencies
gesiscss/binder-ngs-2ddocs-2d2018-2dggg201a-e01a75 18ae0fd4cd73f6d612f276af6afe6fdd663e2724

  • version: 1.16.1
Latest release: almost 5 years ago - 8 downloads - 1,554 dependencies
lishuangshuang3/dnbc4dev latest

  • version: 1.28.0
Latest release: over 1 year ago - 73 downloads - 1,043 dependencies
apollodorus/genentech-jp v1

  • version: 1.24.0
Latest release: almost 2 years ago - 22 downloads - 1,947 dependencies
tercen/anova_operator latest

  • version: 1.26.1
Latest release: about 2 years ago - 13 downloads - 1,547 dependencies
mhettich0years/r-images v1.1.2

  • version: 1.28.0
Latest release: almost 2 years ago - 11 downloads - 334 dependencies
bixbeta/pavian v1

  • version: 1.20.0
Latest release: almost 2 years ago - 8 downloads - 388 dependencies
shashankti/bioc_docker v1

  • version: 1.29.1
Latest release: almost 2 years ago - 7 downloads - 1,350 dependencies
zwcdocker/seurat latest

  • version: 1.22.0
Latest release: almost 2 years ago - 7 downloads - 655 dependencies
hoonbiolab/clustersv v1.1

  • version: 1.16.1
Latest release: over 2 years ago - 10 downloads - 718 dependencies
xjezzuuuu/setinfo-unibit-jupyter latest

  • version: 1.16.1
Latest release: almost 2 years ago - 8 downloads - 2,010 dependencies
compbiocore/dscov_sct 20221201

  • version: 1.28.0
Latest release: almost 2 years ago - 8 downloads - 1,031 dependencies
kxk302/g4hunter 1.0.0

  • version: 1.28.0
Latest release: almost 2 years ago - 20 downloads - 505 dependencies