Ecosyste.ms: Docker

An open API service providing dependency metadata for docker images.

Package Usage : cran : SummarizedExperiment

Explore the latest package usage data for SummarizedExperiment in the cran ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 543
Total downloads: 2,567,533

More details on packages.ecosyste.ms - JSON

intelliseqngs/task_bam-exon-depth 1.0.4

  • version: 1.16.1
Latest release: over 2 years ago - 67 downloads - 547 dependencies
koki/annotationhub 20210323

  • version: 1.20.0
Latest release: over 3 years ago - 73 downloads - 1,250 dependencies
qdidiscoveryservices/ssgsea 1.0

  • version: 1.28.0
Latest release: almost 2 years ago - 65 downloads - 665 dependencies
millerh1/ste v1.0

  • version: 1.28.0
Latest release: almost 2 years ago - 9,929 downloads - 844 dependencies
gesiscss/binder-statomics-2dsga2019-4a5361 1c74d6b57a18a85f98e3380f8356a4a6b5413520

  • version: 1.16.1
Latest release: almost 5 years ago - 55 downloads - 1,313 dependencies
tipsarin/rstudio 4.1.3viraltrack

  • version: 1.24.0
Latest release: almost 2 years ago - 54 downloads - 981 dependencies
lorentzb/gene8940_r 1.0

  • version: 1.28.0
Latest release: almost 2 years ago - 55 downloads - 926 dependencies
dhspence/docker-vep 93

  • version: 1.10.1
Latest release: over 5 years ago - 53 downloads - 1,191 dependencies
qdidiscoveryservices/bam_to_10x_counts_pandoc latest

  • version: 1.24.0
Latest release: almost 2 years ago - 51 downloads - 964 dependencies
doejgi/trinityrnaseq-wdl 2.11.0b

  • version: 1.28.0, 1.16.1
Latest release: over 1 year ago - 331 downloads - 980 dependencies
maestsi/nf-m6anet v1

  • version: 1.20.0
Latest release: almost 2 years ago - 54 downloads - 645 dependencies
ccdlstaging/dr_downloader latest

  • version: 1.8.1
Latest release: over 6 years ago - 47 downloads - 663 dependencies
khoulaha/jabba v1.0.0

  • version: 1.28.0
Latest release: almost 2 years ago - 42 downloads - 2,527 dependencies
tercen/debarcoding_cytof_operator 0.3.0

  • version: 1.26.1
Latest release: over 1 year ago - 109 downloads - 1,659 dependencies
koki/tensor-projects-machima 20220827

  • version: 1.26.1
Latest release: about 2 years ago - 49 downloads - 1,441 dependencies
hoonbiolab/pepatac v1.1

  • version: 1.22.0
Latest release: about 3 years ago - 43 downloads - 1,213 dependencies
mbwali/jupyterlab qiime2023

  • version: 1.28.0
Latest release: over 1 year ago - 56 downloads - 1,941 dependencies
qdidiscoveryservices/batch_correction latest

  • version: 1.18.2
Latest release: almost 4 years ago - 40 downloads - 790 dependencies
crukmi/mesa_dependencies latest

  • version: 1.28.0
Latest release: over 1 year ago - 63 downloads - 1,393 dependencies
broadcptacdev/panoply_so_nmf_report 9bb503e

  • version: 1.16.1
Latest release: over 1 year ago - 95 downloads - 725 dependencies
trust1/rbox v1

Methylation array work toolbox

  • version: 1.20.0
Latest release: over 1 year ago - 48 downloads - 912 dependencies
koki/urchin_workflow_seurat 20230616

  • version: 1.28.0
Latest release: over 1 year ago - 63 downloads - 1,471 dependencies
koki/tensor-projects-parasite 20220819

  • version: 1.26.1
Latest release: over 2 years ago - 43 downloads - 1,281 dependencies
tercen/opencyto_operator latest

  • version: 1.20.0
Latest release: over 2 years ago - 35 downloads - 1,514 dependencies
dmiller15/minfi 4.2.0

  • version: 1.26.1
Latest release: over 2 years ago - 35 downloads - 1,415 dependencies
kcapd/wings-genomics-full latest

  • version: 1.4.0
Latest release: almost 4 years ago - 33 downloads - 1,502 dependencies
mirekphd/ml-cpu-r36-rs 20200131

  • version: 1.8.0
Latest release: almost 5 years ago - 34 downloads - 10,669 dependencies
bryanfisk/capybara latest

  • version: 1.24.0
Latest release: almost 2 years ago - 35 downloads - 1,067 dependencies
hoonbiolab/variantannotation_r v1.1

  • version: 1.16.1
Latest release: about 3 years ago - 36 downloads - 828 dependencies
qdidiscoveryservices/glimma 4.2.0

  • version: 1.26.1
Latest release: over 2 years ago - 69 downloads - 1,371 dependencies
chriswyatt/svm1071deseq2limma latest

  • version: 1.24.0
Latest release: almost 3 years ago - 29 downloads - 327 dependencies
mattjmeier/r-odaf-hc-prod latest

  • version: 1.28.0
Latest release: almost 2 years ago - 35 downloads - 897 dependencies
recetox/xmsanalyzer 2.0.6.1-recetox1

  • version: 1.18.2
Latest release: about 4 years ago - 31 downloads - 588 dependencies
qdidiscoveryservices/seurat_cell_annotation latest

  • version: 1.28.0
Latest release: almost 2 years ago - 34 downloads - 699 dependencies
koki/velocytor 20221015

  • version: 1.26.1
Latest release: about 2 years ago - 39 downloads - 1,452 dependencies
koki/workflow 20210327

  • version: 1.20.0
Latest release: over 3 years ago - 40 downloads - 1,265 dependencies
galclbl/epityping latest

A repository for the epityping tool container

  • version: 1.28.0
Latest release: almost 2 years ago - 56 downloads - 123 dependencies
jpsmith5/peppro latest

  • version: 1.28.0
Latest release: almost 2 years ago - 29 downloads - 1,163 dependencies
alanocallaghan/high-dimensional-stats-r latest

  • version: 1.29.1
Latest release: almost 2 years ago - 91 downloads - 1,601 dependencies
luisas/rdeanalysis latest

  • version: 1.16.1
Latest release: over 4 years ago - 29 downloads - 508 dependencies
chgyi/qiime2 23.09

  • version: 1.12.0
Latest release: 11 months ago - 29 downloads - 271 dependencies
sagnikbanerjee15/ngpint 1.0.0

  • version: 1.25.2
Latest release: almost 3 years ago - 28 downloads - 2,335 dependencies
hoonbiolab/titan v1.1

  • version: 1.16.1
Latest release: about 3 years ago - 29 downloads - 754 dependencies
porchard/decontx 20230104

  • version: 1.28.0
Latest release: almost 2 years ago - 28 downloads - 830 dependencies
haileyzhang/lfq-analyst v1.2.6

A docker container for LFQ-Analyst

  • version: 1.28.0
Latest release: 12 months ago - 89 downloads - 1,496 dependencies
tercen/diffcyt_operator 0.4.2

  • version: 1.26.1
Latest release: over 1 year ago - 49 downloads - 1,563 dependencies
prangannath/rna_seq latest

Container for EvolOMICS RNA_Seq pipeline

  • version: 1.24.0
Latest release: almost 2 years ago - 26 downloads - 1,382 dependencies
tercen/compensate_cytof_operator 0.0.7

  • version: 1.26.1
Latest release: almost 2 years ago - 30 downloads - 1,643 dependencies
tercen/automated_gating_operator 1.0.0

  • version: 1.26.1
Latest release: about 1 year ago - 69 downloads - 655 dependencies
luisas/rfasta latest

  • version: 1.16.1
Latest release: about 4 years ago - 22 downloads - 501 dependencies
crukmi/target-snakemake-docker latest

  • version: 1.16.1
Latest release: over 2 years ago - 21 downloads - 1,148 dependencies
tercen/tracksom_operator 0.1.5

  • version: 1.20.0
Latest release: over 1 year ago - 45 downloads - 760 dependencies
keithgraham5/cnvrobot_v4_2 latest

  • version: 1.16.0
Latest release: almost 2 years ago - 21 downloads - 685 dependencies
mlepetit/rnormalisation 1.0

  • version: 1.22.0
Latest release: almost 2 years ago - 33 downloads - 2,142 dependencies
koki/bindsc 20220609

  • version: 1.26.1
Latest release: over 2 years ago - 22 downloads - 2,060 dependencies
luisas/rde latest

  • version: 1.16.1
Latest release: almost 4 years ago - 20 downloads - 549 dependencies
sheddn/bioinformatics-tools latest

  • version: 1.24.0
Latest release: almost 2 years ago - 41 downloads - 2,518 dependencies
weishwu/systempiper 12022022

  • version: 1.26.1
Latest release: almost 2 years ago - 19 downloads - 1,383 dependencies
etretiakov/workbench-session-complete jammy-2023.10.24-custom-12.5

  • version: 1.30.2
Latest release: about 1 year ago - 58 downloads - 6,961 dependencies
biodancer/nasap_performance latest

write later

  • version: 1.24.0
Latest release: almost 2 years ago - 18 downloads - 2,006 dependencies
koki/urchin_workflow_r 20220531

  • version: 1.26.1
Latest release: over 2 years ago - 17 downloads - 1,253 dependencies
leepc12/test-jupyterhub v0.2.0

test-jupyterhub

  • version: 1.28.0
Latest release: over 1 year ago - 30 downloads - 1,857 dependencies
fgualdr/envrperm latest

  • version: 1.28.0
Latest release: almost 2 years ago - 18 downloads - 480 dependencies
luisas/r_sc latest

  • version: 1.16.1
Latest release: about 4 years ago - 18 downloads - 536 dependencies
mbaardwijk/hmftools latest

  • version: 1.24.0
Latest release: over 1 year ago - 25 downloads - 405 dependencies
shl198/sc_ppl 202306

  • version: 1.30.1
Latest release: over 1 year ago - 52 downloads - 2,005 dependencies
h836472/cs_mainimage test

  • version: 1.24.0
Latest release: almost 2 years ago - 14 downloads - 769 dependencies
souckmi/arriba 1.7

  • version: 1.16.1
Latest release: over 1 year ago - 81 downloads - 310 dependencies
luisas/rannotation latest

  • version: 1.16.1
Latest release: over 4 years ago - 14 downloads - 367 dependencies
froeuhouais/r_image latest

R image with DESeq2

  • version: 1.28.0
Latest release: almost 2 years ago - 18 downloads - 424 dependencies
haileyzhang/fragpipe-analyst v0.23

A Docker container of Fragpipe-Analyst

  • version: 1.28.0
Latest release: over 1 year ago - 34 downloads - 1,511 dependencies
yiluxiangbei/pumpkin-genomealign-notebook 1.0

  • version: 1.24.0
Latest release: almost 3 years ago - 13 downloads - 2,028 dependencies
gongx030/ensemblemerge 2.1.24

Docker image for running ensemblemerge package.

  • version: 1.28.0
Latest release: almost 2 years ago - 18 downloads - 546 dependencies
prismcmap/base-clue-pseq latest

  • version: 1.20.0
Latest release: almost 3 years ago - 18 downloads - 318 dependencies
yiluxiangbei/pumpkin-gene-genomealign 20220216

  • version: 1.24.0
Latest release: almost 3 years ago - 14 downloads - 2,116 dependencies
gnwanne/decontx latest

  • version: 1.28.0
Latest release: almost 2 years ago - 18 downloads - 938 dependencies
delaugustin/r-desqeq2 v4.2

  • version: 1.24.0
Latest release: almost 2 years ago - 14 downloads - 586 dependencies
entsupml/r-with-libraries latest

  • version: 1.28.0
Latest release: almost 2 years ago - 14 downloads - 992 dependencies
qdidiscoveryservices/ubuntu-1604-pipeline_docker-r_and_bioconductor latest

  • version: 1.16.1
Latest release: about 4 years ago - 13 downloads - 1,153 dependencies
tercen/flowsom_mst_operator latest

  • version: 1.26.1
Latest release: over 2 years ago - 14 downloads - 1,547 dependencies
skoyamamd/scoreinvhap latest

  • version: 1.24.0
Latest release: over 2 years ago - 14 downloads - 662 dependencies
dhspence/docker-wg-basestation latest

  • version: 1.16.1
Latest release: about 4 years ago - 13 downloads - 1,126 dependencies
chgyi/trinity 2.8.4

  • version: 1.8.1
Latest release: over 5 years ago - 13 downloads - 795 dependencies
sebeclemence/deseq2 v1.38.1

  • version: 1.28.0
Latest release: almost 2 years ago - 15 downloads - 412 dependencies
lemoniada/test pipeline

  • version: 1.28.0
Latest release: almost 2 years ago - 13 downloads - 1,181 dependencies
hoonbiolab/chromothripsis v1.0

  • version: 1.24.0
Latest release: almost 3 years ago - 14 downloads - 505 dependencies
luisas/rannotation_forcats latest

  • version: 1.16.1
Latest release: about 4 years ago - 12 downloads - 89 dependencies
qdidiscoveryservices/sc_pip_r_and_py latest

  • version: 1.20.0
Latest release: almost 4 years ago - 12 downloads - 1,097 dependencies
intelliseqngs/bioconductor r-coverage-stats_v0.1

  • version: 1.16.0
Latest release: almost 5 years ago - 13 downloads - 185 dependencies
kisudsoe/r-base latest

  • version: 1.28.0
Latest release: over 1 year ago - 83 downloads - 1,107 dependencies
sebrauschert/amplicon_pipeline v0.3.2

A pipeline for amplicon sequencing analysis of marine fish

  • version: 1.30.1
Latest release: over 1 year ago - 60 downloads - 571 dependencies
evolomicsmbbt/rna_seq latest

  • version: 1.24.0
Latest release: almost 2 years ago - 62 downloads - 412 dependencies
tercen/t_test_operator 1.1.3

  • version: 1.26.1
Latest release: 10 months ago - 37 downloads - 1,547 dependencies
haileyzhang/phospho-analyst v1.0.1

  • version: 1.28.0
Latest release: about 1 year ago - 50 downloads - 796 dependencies
tercen/compare_means_operator 0.1.9

  • version: 1.26.1
Latest release: over 1 year ago - 40 downloads - 559 dependencies
broadcptacdev/activedriver latest

  • version: 1.16.1
Latest release: over 1 year ago - 27 downloads - 720 dependencies
tercen/flowcut_operator latest

  • version: 1.26.1
Latest release: over 2 years ago - 23 downloads - 578 dependencies
tercen/normalyzer_operator 0.1.4

  • version: 1.26.1
Latest release: 10 months ago - 23 downloads - 590 dependencies
viascientific/rstudio-app 1.0

  • version: 1.28.0
Latest release: over 1 year ago - 35 downloads - 1,074 dependencies