Ecosyste.ms: Docker

An open API service providing dependency metadata for docker images.

Package Usage : cran : Seurat

Explore the latest package usage data for Seurat in the cran ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 187
Total downloads: 158,929

More details on packages.ecosyste.ms - JSON

shl198/rna_ppl latest

  • version: 4.1.1
Latest release: almost 2 years ago - 20 downloads - 2,099 dependencies
bicore/gcs_10x_rnaseq_qc 4.2.0

  • version: 4.1.1
Latest release: almost 2 years ago - 8 downloads - 1,454 dependencies
ucigenomics/spatiallibd latest

  • version: 4.3.0
Latest release: almost 2 years ago - 17 downloads - 2,006 dependencies
compbiocore/jupyterhub-docker-images-jh_image 20230524

  • version: 4.3.0
Latest release: over 1 year ago - 11 downloads - 3,115 dependencies
wlc27/dcanr v1

  • version: 4.3.0
Latest release: almost 2 years ago - 10 downloads - 1,681 dependencies
chiajungl/seurat 4.3.0-5.0

  • version: 4.3.0
Latest release: 11 months ago - 17 downloads - 1,249 dependencies
alexthiery/r_sqldf 0.2

  • version: 4.0.5
Latest release: over 1 year ago - 12 downloads - 1,491 dependencies
mitpenguin/analysis dev-20230524

  • version: 4.3.0
Latest release: over 1 year ago - 10 downloads - 1,549 dependencies
chiajungl/verse-seurat 4.0.2-4.3

  • version: 4.3.0
Latest release: over 1 year ago - 11 downloads - 1,121 dependencies
yaobio/archr-4g latest

Docker images for ArchR (Analysis of Regulatory Chromatin in R)

  • version: 4.3.0
Latest release: over 1 year ago - 11 downloads - 643 dependencies
archang/seurat-zellk latest

  • version: 4.3.0
Latest release: over 1 year ago - 9 downloads - 935 dependencies
winuthayanon/seurat 4.3.0

  • version: 4.3.0.1
Latest release: over 1 year ago - 15 downloads - 2,660 dependencies
archang/stdeconvolve latest

  • version: 4.1.0
Latest release: over 1 year ago - 10 downloads - 1,373 dependencies
lucifer001/default-dev-backup-test 04-26-23-12-15-34

  • version: 4.3.0
Latest release: over 1 year ago - 8 downloads - 3,484 dependencies
matzieb/shiny-4.0.3-seurat4-spatial latest

  • version: 4.3.0.1
Latest release: over 1 year ago - 9 downloads - 1,061 dependencies
brianyee/cropseq-essentials 1.0.0

  • version: 4.3.0
Latest release: over 1 year ago - 9 downloads - 2,274 dependencies
nilesh0404/st_visualizer m1_0.1.2

  • version: 4.3.0, 4.9.9.9058
Latest release: about 1 year ago - 18 downloads - 1,422 dependencies
apoorvababu/scviewerlite latest

Light version of SeuratViewer, an R Shiny website for viewing single cell RNA-Seq data

  • version: 4.0.5
Latest release: almost 2 years ago - 9 downloads - 1,554 dependencies
cwong23/stx_env latest

Environment for spatial pipeline

  • version: 4.1.1
Latest release: over 1 year ago - 9 downloads - 1,606 dependencies
tomasgomes/nextflow_kallisto_sc 0.3

  • version: 4.3.0.1
Latest release: 12 months ago - 39 downloads - 1,194 dependencies
bbeacosta/sctype latest

  • version: 4.3.0
Latest release: over 1 year ago - 9 downloads - 1,391 dependencies
buddej/scshc 0.1.0

  • version: 4.9.9.9045
Latest release: over 1 year ago - 8 downloads - 950 dependencies
alexdaiii/seurat_tutorial 1.0.1

  • version: 4.3.0.1
Latest release: over 1 year ago - 9 downloads - 847 dependencies
todzhu/monocle latest

  • version: 4.3.0.1
Latest release: over 1 year ago - 9 downloads - 591 dependencies
xiaozhou822/shiny 1.1

Rshiny版本的绘图包

  • version: 4.3.0
Latest release: over 1 year ago - 6 downloads - 927 dependencies
kuangda/pc12 latest

  • version: 4.3.0
Latest release: almost 2 years ago - 6 downloads - 1,326 dependencies
bigomics/omicsplayground master

Self-service analytics for big omics data

  • version: 4.3.0, 4.4.0
Latest release: 12 months ago - 9,749 downloads - 1,551 dependencies
abelean/seurat_desctools 4.1.0

  • version: 4.3.0
Latest release: almost 2 years ago - 605 downloads - 1,090 dependencies
bigomics/omicsplayground-base ub2204_v2

  • version: 4.4.0, 4.3.0
Latest release: about 1 year ago - 1,389 downloads - 1,536 dependencies
johnjun094/scgsea 0.3.11

DockerFile for benchmarking ssGSEA for single-cell RNA-seq

  • version: 4.0.3
Latest release: about 1 year ago - 388 downloads - 924 dependencies
mparikhbroad/mast_workflow 1.0.2

  • version: 4.3.0
Latest release: over 1 year ago - 461 downloads - 1,607 dependencies
jesusgf23/allenseurat latest

  • version: 4.3.0
Latest release: over 1 year ago - 328 downloads - 933 dependencies
chiajungl/smk-scrna-extra 4.3-7.30-4.3

  • version: 4.3.0.1
Latest release: over 1 year ago - 255 downloads - 1,384 dependencies
ocdr/dcv 1.0.7

  • version: 4.4.0, 4.3.0
Latest release: about 1 year ago - 358 downloads - 3,979 dependencies
cmccornack/crmsc latest

  • version: 4.9.9.9058
Latest release: over 1 year ago - 289 downloads - 1,476 dependencies
jichanghan/scrna_seurat4_monocle2_wgcna_0213 06022023

  • version: 4.0.0
Latest release: over 1 year ago - 156 downloads - 1,173 dependencies
alexthiery/schelper seurat-schelper-0.3.5

  • version: 4.0.5
Latest release: over 1 year ago - 211 downloads - 1,494 dependencies
chiajungl/scrna-extra 4.3.0-1.4-4.3

  • version: 4.3.0
Latest release: over 1 year ago - 116 downloads - 1,350 dependencies
qdidiscoveryservices/sclite_generate_clean_osprj v1.1

  • version: 4.3.0.1, 3.2.3
Latest release: about 1 year ago - 102 downloads - 890 dependencies
njjai/scrattch_mapping 0.52.2

  • version: 4.3.0
Latest release: 10 months ago - 436 downloads - 867 dependencies
tariship/dev_sync_directories latest

  • version: 4.3.0
Latest release: about 1 year ago - 112 downloads - 421 dependencies
nathanprovin/cellcom 1.2.2

  • version: 4.3.0.1
Latest release: over 1 year ago - 82 downloads - 596 dependencies
rgregstacey/seurat_image 2.1

  • version: 4.3.0
Latest release: over 1 year ago - 69 downloads - 547 dependencies
jafoltz/sc_python 8

  • version: 4.3.0
Latest release: over 1 year ago - 63 downloads - 438 dependencies
stefanucciluca/tregopathies latest

  • version: 4.3.0.1
Latest release: over 1 year ago - 72 downloads - 488 dependencies
etycksen/sc_deluxe 0.2

  • version: 4.9.9.9058
Latest release: about 1 year ago - 249 downloads - 757 dependencies
gyusikhwang/tgs v1

  • version: 4.1.0
Latest release: over 1 year ago - 50 downloads - 1,095 dependencies
granatumx/gbox-cellid-sctype 1.0.2

  • version: 4.3.0
Latest release: over 1 year ago - 49 downloads - 201 dependencies
mshriver01/share_task_archr latest

  • version: 4.3.0
Latest release: over 1 year ago - 46 downloads - 1,364 dependencies
mknudson/share_task_cell_annotation mei-cell-annotation

  • version: 4.3.0
Latest release: about 1 year ago - 42 downloads - 316 dependencies
mikesiwenwu/eversus_benchmarking v7_s3test

  • version: 4.3.0.1
Latest release: over 1 year ago - 52 downloads - 579 dependencies
brusconi/seurat latest

  • version: 4.9.9.9045
Latest release: over 1 year ago - 67 downloads - 536 dependencies
nfancy/scflow dev

  • version: 4.3.0
Latest release: over 1 year ago - 44 downloads - 778 dependencies
alexthiery/archr_seurat_signac_mega 3.2

  • version: 4.9.9.9049
Latest release: about 1 year ago - 70 downloads - 441 dependencies
andrewsg/archr macs2

  • version: 4.3.0.1
Latest release: over 1 year ago - 51 downloads - 1,356 dependencies
wyangwu/r4.1.2 latest

  • version: 5.0.1
Latest release: over 1 year ago - 67 downloads - 827 dependencies
bioxfu/xseurat2 latest

  • version: 4.3.0
Latest release: almost 2 years ago - 36 downloads - 982 dependencies
robertplayer/scidap-genelists v3.0.0

  • version: 4.1.0
Latest release: about 1 year ago - 74 downloads - 609 dependencies
varemo/sam23 latest

  • version: 4.3.0
Latest release: over 1 year ago - 33 downloads - 190 dependencies
chunjiesamliu/scmocha latest

  • version: 4.3.0.1
Latest release: over 1 year ago - 43 downloads - 1,258 dependencies
dpraveen511/spot spot_ec2

  • version: 4.3.0.1
Latest release: about 1 year ago - 28 downloads - 287 dependencies
yosuketanigawa/rstudio_yt latest

  • version: 4.3.0
Latest release: over 1 year ago - 38 downloads - 2,089 dependencies
chiajungl/scrna 4.3.0-5.0

  • version: 4.3.0
Latest release: 11 months ago - 46 downloads - 1,312 dependencies
jingxin/terrascpipe v0

  • version: 4.3.0
Latest release: almost 2 years ago - 25 downloads - 2,467 dependencies
viascientific/rstudio-app-isee 1.0

  • version: 4.0.1
Latest release: over 1 year ago - 26 downloads - 897 dependencies
jackiezhuqi/bio-rstudio latest

  • version: 4.3.0.1
Latest release: over 1 year ago - 25 downloads - 1,158 dependencies
dantingz/seurat 1.0.2

  • version: 3.1.1
Latest release: about 1 year ago - 27 downloads - 915 dependencies
winuthayanon/rstudio RS4.3.1BM3.17

  • version: 4.3.0.1
Latest release: over 1 year ago - 29 downloads - 2,687 dependencies
abelhj/rstudio 4.2.3

  • version: 4.3.0
Latest release: over 1 year ago - 24 downloads - 800 dependencies
btrspg/vscode-dkd-env latest

  • version: 4.3.0
Latest release: over 1 year ago - 24 downloads - 1,182 dependencies
imegusu/rstudio_rnaseq_all3 latest

RStudio based on bioconductor/bioconductor_docker:RELEASE_3_16 for RNA-Seq

  • version: 4.3.0
Latest release: over 1 year ago - 23 downloads - 1,568 dependencies
gaspardr/r-env v1.2

My R environment for analyses and development

  • version: 4.3.0
Latest release: over 1 year ago - 39 downloads - 554 dependencies
ycli1995/bioinfo_dev 1.0.1

  • version: 4.9.9.9059
Latest release: 11 months ago - 48 downloads - 4,337 dependencies
arnstrm2/rstudio 4.3.1

R studio with Bioconductor and snRNAseq packages

  • version: 4.3.0.1
Latest release: about 1 year ago - 24 downloads - 1,444 dependencies
dnbelabc4/dnbc4dev 2.0.9

  • version: 4.3.0
Latest release: about 1 year ago - 48 downloads - 1,159 dependencies
dongminshin/sc_ppl 1.65

  • version: 4.3.0
Latest release: 8 months ago - 121 downloads - 967 dependencies
koji11235/rnaseq_env latest

  • version: 3.1.1
Latest release: almost 2 years ago - 29 downloads - 981 dependencies
sheddn/singlecell latest

  • version: 4.3.0
Latest release: over 1 year ago - 23 downloads - 2,355 dependencies
atttilacs/ds_seurat_5_extras_hdf5r latest

  • version: 4.9.9.9041
Latest release: over 1 year ago - 21 downloads - 915 dependencies
gesiscss/binder-r2d-g5b5b759-keon-2darbabi-2dkcni-2dsummer-2dschool-2dday-2d3-e4e96e fad4fccb2e0c5030283f1b4e665b22eafa490b69

  • version: 4.0.3
Latest release: over 1 year ago - 47 downloads - 2,189 dependencies
etretiakov/rocker-session latest

  • version: 4.3.0
Latest release: over 1 year ago - 22 downloads - 2,565 dependencies
vidhyagnanasekaran/rocker-single-cell v1

  • version: 4.3.0
Latest release: almost 2 years ago - 18 downloads - 886 dependencies
igrisch/seuratharmony latest

  • version: 4.3.0
Latest release: over 1 year ago - 19 downloads - 931 dependencies
ksinghal28/generate_pon 1.0

  • version: 4.3.0
Latest release: about 1 year ago - 14 downloads - 884 dependencies
pl92297/sceqtl latest

  • version: 4.3.0
Latest release: over 1 year ago - 14 downloads - 930 dependencies
alexthiery/archr_macs2_seurat 3.0

  • version: 4.9.9.9049
Latest release: over 1 year ago - 14 downloads - 801 dependencies
avi156/rocker-binder-upd 4.2.2

  • version: 4.3.0
Latest release: almost 2 years ago - 14 downloads - 2,271 dependencies
uvarc/rstudio tam5xe

  • version: 4.3.0.1
Latest release: about 1 year ago - 14 downloads - 1,062 dependencies
natalie23gill/seurat-4-3_soupx-1-6-1_doubletfinder_67fb8b5 1.4

scRNA analysis- a collection of current tools, file used to build it is copied into /

  • version: 4.3.0
Latest release: over 1 year ago - 14 downloads - 1,392 dependencies
luslab/archr_dev latest

  • version: 4.4.0
Latest release: about 1 year ago - 13 downloads - 1,873 dependencies
cplaisier/ccafv2_extra latest

  • version: 4.3.0.1
Latest release: about 1 year ago - 13 downloads - 1,463 dependencies
alexthiery/archr_hicdc 3.0

  • version: 4.3.0
Latest release: over 1 year ago - 13 downloads - 822 dependencies