Ecosyste.ms: Docker

An open API service providing dependency metadata for docker images.

Package Usage : cran : DESeq2

Explore the latest package usage data for DESeq2 in the cran ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 206
Total downloads: 956,398

More details on packages.ecosyste.ms - JSON

daltoncp/rstudio_celegansbulksequencing 4.2_3

  • version: 1.38.3
Latest release: over 1 year ago - 15 downloads - 1,562 dependencies
compbiocore/lee_isg_erv 20230306

  • version: 1.38.3
Latest release: over 1 year ago - 8 downloads - 1,038 dependencies
srynobio/diagnostic_rnaseq latest

  • version: 1.40.2
Latest release: over 1 year ago - 108 downloads - 1,441 dependencies
jenfisher7/rstudio_sbae latest

  • version: 1.38.2
Latest release: almost 2 years ago - 8 downloads - 1,604 dependencies
ntobias85/abe_repo degust_build

  • version: 1.39.3
Latest release: over 1 year ago - 6 downloads - 1,339 dependencies
brianyee/rnaseq snakemake_1.0.0

  • version: 1.34.0
Latest release: over 1 year ago - 38 downloads - 2,387 dependencies
shl198/rna_ppl latest

  • version: 1.36.0
Latest release: almost 2 years ago - 20 downloads - 2,099 dependencies
bicore/gcs_10x_rnaseq_qc 4.2.0

  • version: 1.36.0
Latest release: almost 2 years ago - 8 downloads - 1,454 dependencies
mfsentma/rna latest

  • version: 1.34.0
Latest release: over 1 year ago - 7 downloads - 807 dependencies
danhumassmed/debrowser 1.0.1

Software for Bioinformatics pipelines DEBrowser

  • version: 1.38.0
Latest release: over 1 year ago - 25 downloads - 1,319 dependencies
compbiocore/jupyterhub-docker-images-jh_image 20230524

  • version: 1.38.3
Latest release: over 1 year ago - 11 downloads - 3,115 dependencies
weishwu/diffbind 3.6.5

  • version: 1.36.0
Latest release: almost 2 years ago - 10 downloads - 1,507 dependencies
wlc27/dcanr v1

  • version: 1.38.2
Latest release: almost 2 years ago - 10 downloads - 1,681 dependencies
chiajungl/seurat 4.3.0-5.0

  • version: 1.40.1
Latest release: 11 months ago - 17 downloads - 1,249 dependencies
fgualdr/env_perm_motifs latest

  • version: 1.38.0
Latest release: over 1 year ago - 10 downloads - 584 dependencies
ericsalomaki/mirna 071723

  • version: 1.34.0
Latest release: over 1 year ago - 10 downloads - 1,834 dependencies
archang/seurat-zellk latest

  • version: 1.38.3
Latest release: over 1 year ago - 9 downloads - 935 dependencies
winuthayanon/seurat 4.3.0

  • version: 1.38.3
Latest release: over 1 year ago - 15 downloads - 2,660 dependencies
hbadrane/fungap version3

  • version: 1.26.0
Latest release: about 1 year ago - 44 downloads - 479 dependencies
tamaraperteghella/r4_gencode latest

  • version: 1.34.0
Latest release: over 1 year ago - 8 downloads - 1,460 dependencies
matzieb/shiny-4.0.3-seurat4-spatial latest

  • version: 1.30.1
Latest release: over 1 year ago - 9 downloads - 1,061 dependencies
chlazaris/dge_env 0.1

  • version: 1.34.0
Latest release: over 1 year ago - 9 downloads - 320 dependencies
nilesh0404/st_visualizer m1_0.1.2

  • version: 1.40.2
Latest release: about 1 year ago - 18 downloads - 1,422 dependencies
preethiilumina/diffbind 1.5

fixed genome name

  • version: 1.38.3
Latest release: 9 months ago - 155 downloads - 626 dependencies
koki/guidedpls-experiments 20230502

  • version: 1.40.0
Latest release: over 1 year ago - 10 downloads - 1,263 dependencies
suimye/cage_box latest

  • version: 1.38.3
Latest release: over 1 year ago - 7 downloads - 698 dependencies
skchronicles/flair v0.1.0

Docker image for FLAIR: Full-Length Alternative Isoform analysis of RNA

  • version: 1.34.0
Latest release: over 1 year ago - 9 downloads - 729 dependencies
fgualdr/env_motifs latest

  • version: 1.38.0
Latest release: over 1 year ago - 5 downloads - 544 dependencies
kuangda/pc12 latest

  • version: 1.36.0
Latest release: almost 2 years ago - 6 downloads - 1,326 dependencies
bigomics/omicsplayground master

Self-service analytics for big omics data

  • version: 1.34.0
Latest release: 12 months ago - 9,749 downloads - 1,551 dependencies
abelean/seurat_desctools 4.1.0

  • version: 1.34.0
Latest release: almost 2 years ago - 605 downloads - 1,090 dependencies
bumproo/rnaseqclass23 latest

  • version: 1.40.1
Latest release: over 1 year ago - 413 downloads - 904 dependencies
bigomics/omicsplayground-base ub2204_v2

  • version: 1.34.0
Latest release: about 1 year ago - 1,389 downloads - 1,536 dependencies
johnjun094/scgsea 0.3.11

DockerFile for benchmarking ssGSEA for single-cell RNA-seq

  • version: 1.32.0
Latest release: about 1 year ago - 388 downloads - 924 dependencies
jesusgf23/allenseurat latest

  • version: 1.38.3
Latest release: over 1 year ago - 328 downloads - 933 dependencies
datashield/rock-dolomite-xenon latest

  • version: 1.40.2
Latest release: over 1 year ago - 472 downloads - 1,410 dependencies
chiajungl/smk-scrna-extra 4.3-7.30-4.3

  • version: 1.40.2
Latest release: over 1 year ago - 255 downloads - 1,384 dependencies
cmccornack/crmsc latest

  • version: 1.34.0
Latest release: over 1 year ago - 289 downloads - 1,476 dependencies
ilariap/r_cnmops_exomedepth latest

Docker container containing panel-cnMops, cnMops and Exomedepth

  • version: 1.38.2
Latest release: almost 2 years ago - 195 downloads - 730 dependencies
omicschef/rnaseqchef v1.0.9

RNAseqChef, an RNA-seq data controller highlighting gene expression features

  • version: 1.40.2
Latest release: about 1 year ago - 287 downloads - 1,420 dependencies
commander121/rmarkdown latest

  • version: 1.40.2
Latest release: almost 2 years ago - 229 downloads - 1,625 dependencies
jichanghan/scrna_seurat4_monocle2_wgcna_0213 06022023

  • version: 1.30.1
Latest release: over 1 year ago - 156 downloads - 1,173 dependencies
fallingstar10/hbsigrocker latest

  • version: 1.40.2
Latest release: over 1 year ago - 142 downloads - 1,223 dependencies
chiajungl/scrna-extra 4.3.0-1.4-4.3

  • version: 1.40.1
Latest release: over 1 year ago - 116 downloads - 1,350 dependencies
sviatsidorov/r_processor 0.4

Analysis of alternative isoforms of human TFs in R

  • version: 1.38.3
Latest release: about 1 year ago - 110 downloads - 550 dependencies
sgiamberardinorti/dge_analysis 202304171546_x86_64

  • version: 1.38.3
Latest release: over 1 year ago - 102 downloads - 1,881 dependencies
cjchen/scauclass_2023 1.0

  • version: 1.40.2
Latest release: over 1 year ago - 100 downloads - 393 dependencies
shengqh/cqs_smallrnaseq latest

  • version: 1.40.2
Latest release: 10 months ago - 133 downloads - 1,416 dependencies
lroser/databricksbio latest

  • version: 1.40.2
Latest release: over 1 year ago - 79 downloads - 975 dependencies
tariship/dev_sync_directories latest

  • version: 1.38.3
Latest release: about 1 year ago - 112 downloads - 421 dependencies
nciccbr/ccbr_r_4.3.0 v1

  • version: 1.40.1
Latest release: over 1 year ago - 83 downloads - 679 dependencies
sviatsidorov/granie_analysis 0.1

Analysis of gliogenesis in a mouse model using GRaNIE

  • version: 1.38.3
Latest release: over 1 year ago - 70 downloads - 290 dependencies
nciccbr/ccbr_fraser_1.10.2 latest

  • version: 1.30.0
Latest release: almost 2 years ago - 64 downloads - 293 dependencies
dhspence/docker-rstudio-python latest

  • version: 1.38.3
Latest release: over 1 year ago - 60 downloads - 272 dependencies
stefanucciluca/tregopathies latest

  • version: 1.38.3
Latest release: over 1 year ago - 72 downloads - 488 dependencies
etycksen/sc_deluxe 0.2

  • version: 1.38.3
Latest release: about 1 year ago - 249 downloads - 757 dependencies
gyusikhwang/tgs v1

  • version: 1.34.0
Latest release: over 1 year ago - 50 downloads - 1,095 dependencies
alexsickler/open-pedcan latest

  • version: 1.26.0
Latest release: almost 2 years ago - 50 downloads - 864 dependencies
biomehub/encodestatsbase 0.0.5

Basic docker image used as a base for EncodeStats.

  • version: 1.40.2
Latest release: about 1 year ago - 50 downloads - 853 dependencies
omicschef/epigenomechef v1.1.3

  • version: 1.40.2
Latest release: 11 months ago - 113 downloads - 1,066 dependencies
wyangwu/r4.1.2 latest

  • version: 1.34.0
Latest release: over 1 year ago - 67 downloads - 827 dependencies
robertplayer/scidap-genelists v3.0.0

  • version: 1.34.0
Latest release: about 1 year ago - 74 downloads - 609 dependencies
koki/tensor-projects-fly 20230516

  • version: 1.40.1
Latest release: over 1 year ago - 40 downloads - 222 dependencies
chunjiesamliu/scmocha latest

  • version: 1.40.2
Latest release: over 1 year ago - 43 downloads - 1,258 dependencies
srynobio/rna latest

  • version: 1.38.3
Latest release: over 1 year ago - 31 downloads - 269 dependencies
mfilipuz/r_v423 23.05.09

  • version: 1.38.3
Latest release: over 1 year ago - 28 downloads - 208 dependencies
fgualdr/env_norm_gr_idr latest

  • version: 1.38.0
Latest release: over 1 year ago - 29 downloads - 506 dependencies
yosuketanigawa/rstudio_yt latest

  • version: 1.36.0
Latest release: over 1 year ago - 38 downloads - 2,089 dependencies
chiajungl/scrna 4.3.0-5.0

  • version: 1.40.1
Latest release: 11 months ago - 46 downloads - 1,312 dependencies
bianca7/deseq2 latest

  • version: 1.38.3
Latest release: over 1 year ago - 27 downloads - 1,263 dependencies
bioedge/edge_24_1_ubuntu18 20231115

  • version: 1.22.1
Latest release: about 1 year ago - 40 downloads - 2,569 dependencies
qdidiscoveryservices/diffbind latest

  • version: 1.40.2
Latest release: over 1 year ago - 26 downloads - 526 dependencies
winuthayanon/rstudio RS4.3.1BM3.17

  • version: 1.40.2
Latest release: over 1 year ago - 29 downloads - 2,687 dependencies
btrspg/vscode-dkd-env latest

  • version: 1.34.0
Latest release: over 1 year ago - 24 downloads - 1,182 dependencies
imegusu/rstudio_rnaseq_all3 latest

RStudio based on bioconductor/bioconductor_docker:RELEASE_3_16 for RNA-Seq

  • version: 1.38.3
Latest release: over 1 year ago - 23 downloads - 1,568 dependencies
lesbiangreat/bioinfor_dev v0.64

  • version: 1.40.2
Latest release: about 1 year ago - 32 downloads - 3,779 dependencies
gaspardr/r-env v1.2

My R environment for analyses and development

  • version: 1.38.3
Latest release: over 1 year ago - 39 downloads - 554 dependencies
gesiscss/binder-r2d-g5b5b759-bassiousmaximus-2dbinder-2dr-2dgus-cfe967 f0376d46edceebca7d36de69b94f160a53a7ff78

  • version: 1.30.1
Latest release: over 1 year ago - 22 downloads - 2,152 dependencies
ycli1995/bioinfo_dev 1.0.1

  • version: 1.40.2
Latest release: 11 months ago - 48 downloads - 4,337 dependencies
arnstrm2/rstudio 4.3.1

R studio with Bioconductor and snRNAseq packages

  • version: 1.40.2
Latest release: about 1 year ago - 24 downloads - 1,444 dependencies
dongminshin/sc_ppl 1.65

  • version: 1.38.3
Latest release: 9 months ago - 121 downloads - 967 dependencies
koji11235/rnaseq_env latest

  • version: 1.26.0
Latest release: almost 2 years ago - 29 downloads - 981 dependencies
etretiakov/rocker-session latest

  • version: 1.40.1
Latest release: over 1 year ago - 22 downloads - 2,565 dependencies
nishunehra/phantasus_base v0_1

  • version: 1.26.0
Latest release: over 1 year ago - 20 downloads - 622 dependencies
akialbz/ptox rstudio

  • version: 1.38.3
Latest release: over 1 year ago - 19 downloads - 856 dependencies
qxes4210/mimseq double_result_page

This repo is for the mimseq web tool (tRNA analysis)

  • version: 1.38.0
Latest release: about 1 year ago - 27 downloads - 386 dependencies
mfsentma/atacseq latest

  • version: 1.34.0
Latest release: over 1 year ago - 19 downloads - 852 dependencies
mziemann/enrichment_recipe latest

Example highly reproducible bioinformatics workflow including transcriptome and pathway analysis.

  • version: 1.38.3
Latest release: over 1 year ago - 25 downloads - 1,332 dependencies
danhumassmed/de-seq-tools 1.0.1

Software for Bioinformatics pipelines HOMER, DESeq2, samtools, edgeR

  • version: 1.40.2
Latest release: over 1 year ago - 26 downloads - 540 dependencies
vidhyagnanasekaran/rocker-single-cell v1

  • version: 1.38.3
Latest release: almost 2 years ago - 18 downloads - 886 dependencies
igrisch/seuratharmony latest

  • version: 1.38.3
Latest release: over 1 year ago - 19 downloads - 931 dependencies
wilfriedguiblet/fraser v0.1

  • version: 1.30.0
Latest release: almost 2 years ago - 15 downloads - 858 dependencies
bmgcode/glimma v2

  • version: 1.40.2
Latest release: over 1 year ago - 15 downloads - 445 dependencies
joshuatobin257/drop latest

  • version: 1.40.2
Latest release: about 1 year ago - 15 downloads - 840 dependencies
pl92297/sceqtl latest

  • version: 1.38.3
Latest release: over 1 year ago - 14 downloads - 930 dependencies