Ecosyste.ms: Docker

An open API service providing dependency metadata for docker images.

Package Usage : cran : BiocVersion

Explore the latest package usage data for BiocVersion in the cran ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 752
Total downloads: 3,238,035

More details on packages.ecosyste.ms - JSON

viascientific/rstudio-app-isee 1.0

  • version: 3.12.0
Latest release: over 1 year ago - 26 downloads - 897 dependencies
digitalproteomes/mh_class 2023

  • version: 3.14.0
Latest release: over 1 year ago - 26 downloads - 3,939 dependencies
weishwu/snikt 0.5.0

  • version: 3.17.1
Latest release: over 1 year ago - 23 downloads - 1,253 dependencies
jackiezhuqi/bio-rstudio latest

  • version: 3.16.0
Latest release: over 1 year ago - 25 downloads - 1,158 dependencies
winuthayanon/rstudio RS4.3.1BM3.17

  • version: 3.17.1
Latest release: over 1 year ago - 29 downloads - 2,687 dependencies
singha53/modc v0.1

  • version: 3.14.0
Latest release: over 1 year ago - 25 downloads - 783 dependencies
rosadesa/freec 0.5

  • version: 3.14.0
Latest release: over 1 year ago - 28 downloads - 662 dependencies
chosenobih/pamlinc v0.4

A workflow for Parallel Annotation of Modified RNAs, LincRNAs & Transcript Abundance Quantification.

  • version: 3.10.1
Latest release: over 1 year ago - 30 downloads - 1,036 dependencies
dcarrillouu/plot_genomes 0.2

  • version: 3.16.0
Latest release: over 1 year ago - 25 downloads - 758 dependencies
btrspg/vscode-dkd-env latest

  • version: 3.14.0
Latest release: over 1 year ago - 24 downloads - 1,182 dependencies
lp871/cellann v1.1

  • version: 3.17.1
Latest release: over 1 year ago - 34 downloads - 1,533 dependencies
imegusu/rstudio_rnaseq_all3 latest

RStudio based on bioconductor/bioconductor_docker:RELEASE_3_16 for RNA-Seq

  • version: 3.16.0
Latest release: over 1 year ago - 23 downloads - 1,568 dependencies
gaspardr/r-env v1.2

My R environment for analyses and development

  • version: 3.16.0
Latest release: over 1 year ago - 39 downloads - 554 dependencies
souckmi/fusioninspector 1.0

  • version: 3.10.1
Latest release: almost 2 years ago - 22 downloads - 602 dependencies
espirado/slurm.controller 23.02

  • version: 3.17.1
Latest release: over 1 year ago - 23 downloads - 2,417 dependencies
ycli1995/bioinfo_dev 1.0.1

  • version: 3.17.1
Latest release: 11 months ago - 48 downloads - 4,337 dependencies
vmikk/nextits 0.5.0

  • version: 3.16.0
Latest release: over 1 year ago - 38 downloads - 584 dependencies
arnstrm2/rstudio 4.3.1

R studio with Bioconductor and snRNAseq packages

  • version: 3.17.1
Latest release: over 1 year ago - 24 downloads - 1,444 dependencies
hafen/service-catalog-docker latest

Data science container image for ki service catalog

  • version: 3.17.1
Latest release: almost 2 years ago - 21 downloads - 1,404 dependencies
alexdhill/complete-seq latest

  • version: 3.17.1
Latest release: 9 months ago - 304 downloads - 584 dependencies
dongminshin/sc_ppl 1.65

  • version: 3.16.0
Latest release: 9 months ago - 121 downloads - 967 dependencies
koji11235/rnaseq_env latest

  • version: 3.10.1
Latest release: almost 2 years ago - 29 downloads - 981 dependencies
porchard/tensorqtl_dev 0124d74

  • version: 3.16.0
Latest release: over 1 year ago - 26 downloads - 606 dependencies
yamaken37/heatmap_svg 2023013118

  • version: 3.15.2
Latest release: almost 2 years ago - 23 downloads - 1,213 dependencies
sheddn/singlecell latest

  • version: 3.14.0
Latest release: over 1 year ago - 23 downloads - 2,355 dependencies
atttilacs/ds_seurat_5_extras_hdf5r latest

  • version: 3.14.0
Latest release: over 1 year ago - 21 downloads - 915 dependencies
bpimages/rgraphstuff-arm64 latest

  • version: 3.17.1
Latest release: about 1 year ago - 20 downloads - 347 dependencies
omicsclass/pan-genome v1.0

  • version: 3.16.0
Latest release: over 1 year ago - 168 downloads - 3,108 dependencies
gesiscss/binder-r2d-g5b5b759-keon-2darbabi-2dkcni-2dsummer-2dschool-2dday-2d3-e4e96e fad4fccb2e0c5030283f1b4e665b22eafa490b69

  • version: 3.12.0
Latest release: over 1 year ago - 47 downloads - 2,189 dependencies
etretiakov/rocker-session latest

  • version: 3.17.1
Latest release: over 1 year ago - 22 downloads - 2,565 dependencies
phenomedb/phenomedb-airflow latest

  • version: 3.16.0
Latest release: over 1 year ago - 20 downloads - 1,310 dependencies
mlampros/icesat2rbinder 1bcdaed54e71

  • version: 3.18.0
Latest release: 12 months ago - 47 downloads - 2,308 dependencies
nishunehra/phantasus_base v0_1

  • version: 3.10.1
Latest release: over 1 year ago - 20 downloads - 622 dependencies
akialbz/ptox rstudio

  • version: 3.16.0
Latest release: over 1 year ago - 19 downloads - 856 dependencies
mfsentma/atacseq latest

  • version: 3.14.0
Latest release: over 1 year ago - 19 downloads - 852 dependencies
andrewrrelmore/genepi_vscode test

  • version: 3.16.0
Latest release: about 1 year ago - 19 downloads - 1,188 dependencies
skchronicles/genome-seek v0.1.0

Official base image of the genome-seek pipeline: https://github.com/OpenOmics/genome-seek

  • version: 3.16.0
Latest release: over 1 year ago - 79 downloads - 1,367 dependencies
mziemann/enrichment_recipe latest

Example highly reproducible bioinformatics workflow including transcriptome and pathway analysis.

  • version: 3.16.0
Latest release: over 1 year ago - 25 downloads - 1,332 dependencies
wuys13/docker-ckg latest

  • version: 3.10.1
Latest release: almost 2 years ago - 19 downloads - 2,169 dependencies
skydashan/commot 1.0.1

  • version: 3.14.0
Latest release: over 1 year ago - 20 downloads - 1,492 dependencies
kobedr/bismark_alignment_utils latest

  • version: 3.14.0
Latest release: about 1 year ago - 18 downloads - 596 dependencies
bianca7/mompreprocess latest

  • version: 3.18.0
Latest release: over 1 year ago - 53 downloads - 1,340 dependencies
vidhyagnanasekaran/rocker-single-cell v1

  • version: 3.16.0
Latest release: almost 2 years ago - 18 downloads - 886 dependencies
igrisch/seuratharmony latest

  • version: 3.16.0
Latest release: over 1 year ago - 19 downloads - 931 dependencies
pderouault/bamkin 1.0.3

  • version: 3.18.0
Latest release: over 1 year ago - 21 downloads - 1,225 dependencies
cgrlab/centos7_bfx 1.0.0

  • version: 3.16.0
Latest release: almost 2 years ago - 20 downloads - 1,457 dependencies
princessmaximacenter/gridss 2.13.2

  • version: 3.14.0
Latest release: about 1 year ago - 66 downloads - 801 dependencies
koki/ott 20231012

  • version: 3.17.1
Latest release: about 1 year ago - 23 downloads - 1,228 dependencies
jeffgillan/pointcloud_to_chm arm64

These containers will launch Rstudio Server with an R-script to convert LiDAR point cloud to raster.

  • version: 3.18.0
Latest release: about 1 year ago - 28 downloads - 969 dependencies
wilfriedguiblet/fraser v0.1

  • version: 3.12.0
Latest release: almost 2 years ago - 15 downloads - 858 dependencies
daemontus/software-cell-oracle latest

  • version: 3.17.1
Latest release: over 1 year ago - 15 downloads - 1,013 dependencies
kubran/odcf_aceseqcalling v6

  • version: 3.8.0
Latest release: over 1 year ago - 15 downloads - 1,103 dependencies
saulpierottiebi/biomart latest

  • version: 3.16.0
Latest release: over 1 year ago - 15 downloads - 360 dependencies
mferrosantos/epidish 0.1

  • version: 3.17.1
Latest release: about 1 year ago - 15 downloads - 1,216 dependencies
laribritto/geneplast v1.1

  • version: 3.17.1
Latest release: over 1 year ago - 15 downloads - 356 dependencies
bmgcode/glimma v2

  • version: 3.17.1
Latest release: over 1 year ago - 15 downloads - 445 dependencies
almahmoud/shiny-iseehub anvil

  • version: 3.18.0
Latest release: over 1 year ago - 15 downloads - 1,591 dependencies
joshuatobin257/drop latest

  • version: 3.17.1
Latest release: about 1 year ago - 15 downloads - 840 dependencies
neurogenomicslab/scavenge main

  • version: 3.17.1
Latest release: almost 2 years ago - 15 downloads - 1,305 dependencies
ngsom/scanorama latest

  • version: 3.15.2
Latest release: about 1 year ago - 14 downloads - 1,161 dependencies
darribas/gdsrpy latest

  • version: 3.17.1
Latest release: over 1 year ago - 14 downloads - 2,804 dependencies
ksinghal28/generate_pon 1.0

  • version: 3.14.0
Latest release: about 1 year ago - 14 downloads - 884 dependencies
trust1/bethesda light

Brain tumor BethesdaV2 and EPIC (Bethesda v1) classifier box

  • version: 3.12.0
Latest release: over 1 year ago - 14 downloads - 840 dependencies
skchronicles/genome-seek_hla v0.1.0

Official docker image for HLA typing steps in genome-seek

  • version: 3.16.0
Latest release: over 1 year ago - 14 downloads - 1,722 dependencies
pl92297/sceqtl latest

  • version: 3.16.0
Latest release: over 1 year ago - 14 downloads - 930 dependencies
nauqgnesh/latch-pod-base latest

  • version: 3.17.1
Latest release: about 1 year ago - 14 downloads - 2,934 dependencies
alexthiery/archr_macs2_seurat 3.0

  • version: 3.14.0
Latest release: over 1 year ago - 14 downloads - 801 dependencies
avi156/rocker-binder-upd 4.2.2

  • version: 3.16.0
Latest release: almost 2 years ago - 14 downloads - 2,271 dependencies
natalie23gill/seurat-4-3_soupx-1-6-1_doubletfinder_67fb8b5 1.4

scRNA analysis- a collection of current tools, file used to build it is copied into /

  • version: 3.16.0
Latest release: over 1 year ago - 14 downloads - 1,392 dependencies
mdbrannock/network_transform debug

  • version: 3.16.0
Latest release: over 1 year ago - 14 downloads - 1,776 dependencies
ajhodgkinson/mitogwas latest

  • version: 3.17.1
Latest release: about 1 year ago - 14 downloads - 1,094 dependencies
dovetailg/hiccompare latest

  • version: 3.16.0
Latest release: over 1 year ago - 14 downloads - 658 dependencies
esollier/hmf latest

  • version: 3.16.0
Latest release: over 1 year ago - 14 downloads - 1,275 dependencies
bigdatainbiomedicine/inspect-r latest

  • version: 3.17.1
Latest release: about 1 year ago - 13 downloads - 643 dependencies
gm088/svm 030723

  • version: 3.17.1
Latest release: over 1 year ago - 13 downloads - 1,497 dependencies
alexdhill/vscode complete-seq

Multipurpose developer suite with VSCode base. Supports C++, python, R with notebooks.

  • version: 3.14.0
Latest release: over 1 year ago - 13 downloads - 1,510 dependencies
louisk92/spapros_genebasis v1.0

  • version: 3.17.1
Latest release: over 1 year ago - 13 downloads - 1,419 dependencies
gesiscss/binder-r2d-g5b5b759-seabbs-2didmodelr-838c90 52c4ad197297bf388a6161ceee6d1bc54559ec0f

  • version: 3.17.1
Latest release: over 1 year ago - 13 downloads - 2,099 dependencies
sebimer/samba-v4-r 4.2.3

  • version: 3.16.0
Latest release: over 1 year ago - 13 downloads - 1,172 dependencies
dovetailg/chicdiff latest

  • version: 3.16.0
Latest release: almost 2 years ago - 13 downloads - 700 dependencies
espirado/slurm.database 23.02

  • version: 3.17.1
Latest release: over 1 year ago - 13 downloads - 2,227 dependencies
cplaisier/ccafv2_extra latest

  • version: 3.16.0
Latest release: about 1 year ago - 13 downloads - 1,463 dependencies
alexthiery/archr_hicdc 3.0

  • version: 3.14.0
Latest release: over 1 year ago - 13 downloads - 822 dependencies
derekcorcoran/rfate 3a21f35fd2aa05a03b58d4cb0c5bf6724ebf4048

  • version: 3.14.0
Latest release: over 1 year ago - 13 downloads - 1,840 dependencies
cspinc/blm-pva-cv rstudio

  • version: 3.18.0
Latest release: 12 months ago - 13 downloads - 1,603 dependencies
rtibiocloud/neurogenomicslab_mungesumstats v1.7.10_6e16c82

  • version: 3.17.1
Latest release: about 1 year ago - 13 downloads - 1,293 dependencies
ericsalomaki/rnaseq_r4_2 latest

  • version: 3.16.0
Latest release: almost 2 years ago - 13 downloads - 989 dependencies
omicsclass/metagenomics latest

  • version: 3.16.0
Latest release: about 1 year ago - 13 downloads - 1,493 dependencies
kuglerf/tft_r v5

  • version: 3.16.0
Latest release: about 1 year ago - 13 downloads - 812 dependencies
alexthiery/archr_dev_macs2 3.0

  • version: 3.14.0
Latest release: over 1 year ago - 12 downloads - 805 dependencies
costanzopadovano/bioconductor_r_image jupyter_notebook_version

Docker image preconfigured with R and Bioconductor for streamlined bioinformatics data analysis.

  • version: 3.18.0
Latest release: about 1 year ago - 12 downloads - 2,685 dependencies
wcmay/geospatial_cron sendgridr

The Rocker geospatial image with supercronic, meant for running data pipelines

  • version: 3.17.1
Latest release: over 1 year ago - 12 downloads - 1,145 dependencies
dovetailg/fitdiff latest

  • version: 3.16.0
Latest release: over 1 year ago - 12 downloads - 550 dependencies
forest2000/seuratv5 latest

Update Seurat to version 5

  • version: 3.16.0
Latest release: about 1 year ago - 12 downloads - 1,130 dependencies
abelean/seurat_deg 4.1.0

  • version: 3.14.0
Latest release: almost 2 years ago - 12 downloads - 1,083 dependencies
bitterfly/docker-ckg latest-dev-wgcna

  • version: 3.10.1
Latest release: about 1 year ago - 12 downloads - 2,173 dependencies
oliveirahenrique70/app-tide latest

  • version: 3.17.1
Latest release: over 1 year ago - 12 downloads - 426 dependencies
skydashan/infercnv 1.0.2

  • version: 3.14.0
Latest release: over 1 year ago - 12 downloads - 620 dependencies
briansha/prepsct latest

  • version: 3.14.0
Latest release: over 1 year ago - 12 downloads - 695 dependencies
ajay16bharadwaj/diann_msstats 3.22.1

  • version: 3.12.0
Latest release: about 1 year ago - 12 downloads - 475 dependencies