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Package Usage : cran : BSgenome

Explore the latest package usage data for BSgenome in the cran ecosystem, including detailed information on package dependencies and their usage.

Total dependents: 166
Total downloads: 79,829

More details on packages.ecosyste.ms - JSON

khoulaha/shatterseek v1.0.0

  • version: 1.58.0
Latest release: over 2 years ago - 28 downloads - 664 dependencies
preethiilumina/diffbind 1.5.1

fixed genome name

  • version: 1.66.3
Latest release: 8 months ago - 274 downloads - 626 dependencies
cbgr/cager261 1.4

Container for the CAGEr tool version 2.6.1.

  • version: 1.68.0
Latest release: over 1 year ago - 58 downloads - 1,356 dependencies
timothystephens/genotype_samples 0.0.1

  • version: 1.66.3
Latest release: about 2 years ago - 53 downloads - 469 dependencies
suimye/cage_box latest

  • version: 1.66.3
Latest release: over 2 years ago - 16 downloads - 698 dependencies
mapostolides/test12345 latest

  • version: 1.54.0
Latest release: about 2 years ago - 12 downloads - 566 dependencies
fgualdr/env_motifs latest

  • version: 1.66.3
Latest release: about 2 years ago - 28 downloads - 544 dependencies
bigomics/omicsplayground v3.5.21

Self-service analytics for big omics data

  • version: 1.62.0
Latest release: 5 months ago - 48,646 downloads - 1,551 dependencies
scao/microsec 0.0.1

  • version: 1.66.2
Latest release: over 2 years ago - 5,923 downloads - 507 dependencies
bigomics/omicsplayground-base ub2204_v4

  • version: 1.62.0
Latest release: about 1 year ago - 1,554 downloads - 1,536 dependencies
sophiewebster/mhe latest

  • version: 1.68.0
Latest release: about 2 years ago - 33,472 downloads - 620 dependencies
datashield/rock-dolomite-xenon 2.1.1

This DataSHIELD profile consists of the platform 'dolomite' and the profile 'xenon'.

  • version: 1.68.0
Latest release: over 1 year ago - 1,528 downloads - 1,410 dependencies
cmccornack/crmsc latest

  • version: 1.62.0
Latest release: about 2 years ago - 374 downloads - 1,476 dependencies
eppicenter/mad4hatter latest

  • version: 1.68.0
Latest release: over 2 years ago - 598 downloads - 739 dependencies
omicschef/rnaseqchef v1.1.4

RNAseqChef, an RNA-seq data controller highlighting gene expression features

  • version: 1.68.0
Latest release: 7 months ago - 1,257 downloads - 1,420 dependencies
qdidiscoveryservices/vcfcompare 1.0

  • version: 1.68.0
Latest release: almost 2 years ago - 1,017 downloads - 784 dependencies
fallingstar10/hbsigrocker latest

  • version: 1.68.0
Latest release: about 2 years ago - 253 downloads - 1,223 dependencies
muhengliao/r_docker2 genome

  • version: 1.58.0
Latest release: over 1 year ago - 293 downloads - 515 dependencies
sridnona/r4.2.0 v1

  • version: 1.66.3
Latest release: over 2 years ago - 98 downloads - 832 dependencies
tariship/dev_sync_directories latest

  • version: 1.66.3
Latest release: almost 2 years ago - 245 downloads - 421 dependencies
nciccbr/ccbr_r_4.3.0 v1

  • version: 1.68.0
Latest release: about 2 years ago - 146 downloads - 679 dependencies
sviatsidorov/granie_analysis 0.1

Analysis of gliogenesis in a mouse model using GRaNIE

  • version: 1.66.3
Latest release: over 2 years ago - 82 downloads - 290 dependencies
nciccbr/ccbr_fraser_1.10.2 latest

  • version: 1.58.0
Latest release: over 2 years ago - 74 downloads - 293 dependencies
almurphy/mungesumstats latest

  • version: 1.69.0
Latest release: about 2 years ago - 70 downloads - 265 dependencies
dhspence/docker-rstudio-python latest

  • version: 1.66.3
Latest release: over 2 years ago - 104 downloads - 272 dependencies
gru4/scan2workinghg38 latest

  • version: 1.62.0
Latest release: about 2 years ago - 64 downloads - 776 dependencies
indraniel/chip-pipeline-annotation v1

  • version: 1.66.3
Latest release: about 2 years ago - 273 downloads - 218 dependencies
gru4/scan2fixedhg38 latest

  • version: 1.62.0
Latest release: about 2 years ago - 84 downloads - 777 dependencies
alexsickler/open-pedcan latest

  • version: 1.54.0
Latest release: over 2 years ago - 150 downloads - 864 dependencies
mshriver01/share_task_archr latest

  • version: 1.62.0
Latest release: almost 2 years ago - 75 downloads - 1,364 dependencies
omicschef/epigenomechef v1.1.5

  • version: 1.68.0
Latest release: over 1 year ago - 390 downloads - 1,066 dependencies
alexthiery/archr_seurat_signac_mega 3.2

  • version: 1.62.0
Latest release: almost 2 years ago - 132 downloads - 441 dependencies
andrewsg/archr dev

  • version: 1.68.0
Latest release: over 1 year ago - 132 downloads - 1,356 dependencies
wyangwu/r4.1.2 latest

  • version: 1.62.0
Latest release: almost 2 years ago - 93 downloads - 827 dependencies
bioxfu/xseurat2 latest

  • version: 1.66.2
Latest release: over 2 years ago - 63 downloads - 982 dependencies
gevrony/hidef-seq 3.0

  • version: 1.62.0
Latest release: 6 months ago - 261 downloads - 1,205 dependencies
chunjiesamliu/scmocha latest

  • version: 1.68.0
Latest release: almost 2 years ago - 67 downloads - 1,258 dependencies
mskilab/hetpileups latest

  • version: 1.58.0
Latest release: almost 2 years ago - 132 downloads - 246 dependencies
scwatts/bolt_gpgr 0.1.0

  • version: 1.62.0
Latest release: almost 2 years ago - 48 downloads - 337 dependencies
fgualdr/env_norm_gr_idr latest

  • version: 1.66.3
Latest release: about 2 years ago - 65 downloads - 506 dependencies
repbioinfo/transformgampoi latest

  • version: 1.62.0
Latest release: over 1 year ago - 39 downloads - 1,664 dependencies
skchronicles/genome-seek_trim_map v0.1.1

Official docker image for trimming and alignment with genome-seek

  • version: 1.66.3
Latest release: 9 months ago - 266 downloads - 1,367 dependencies
qdidiscoveryservices/diffbind latest

  • version: 1.68.0
Latest release: about 2 years ago - 40 downloads - 526 dependencies
winuthayanon/rstudio 4.3.0

  • version: 1.68.0
Latest release: about 2 years ago - 128 downloads - 2,687 dependencies
imegusu/rstudio_rnaseq_all3 latest

RStudio based on bioconductor/bioconductor_docker:RELEASE_3_16 for RNA-Seq

  • version: 1.66.3
Latest release: about 2 years ago - 31 downloads - 1,568 dependencies
zjnolen/angsd-snakemake-pipeline 0.1

  • version: 1.62.0
Latest release: about 2 years ago - 126 downloads - 643 dependencies
ycli1995/bioinfo_dev 1.1.0

  • version: 1.68.0
Latest release: about 1 year ago - 157 downloads - 4,337 dependencies
arnstrm2/rstudio 4.3.1

R studio with Bioconductor and snRNAseq packages

  • version: 1.68.0
Latest release: almost 2 years ago - 67 downloads - 1,444 dependencies
alexdhill/complete-seq time

  • version: 1.68.0
Latest release: about 1 year ago - 1,773 downloads - 584 dependencies
etretiakov/rocker-session latest

  • version: 1.68.0
Latest release: about 2 years ago - 57 downloads - 2,565 dependencies
mfsentma/atacseq latest

  • version: 1.62.0
Latest release: over 2 years ago - 33 downloads - 852 dependencies
andrewrrelmore/genepi_vscode test

  • version: 1.66.3
Latest release: almost 2 years ago - 42 downloads - 1,188 dependencies
skchronicles/genome-seek v0.1.0

Official base image of the genome-seek pipeline: https://github.com/OpenOmics/genome-seek

  • version: 1.66.3
Latest release: over 2 years ago - 266 downloads - 1,367 dependencies
cgrlab/centos7_bfx 1.0.0

  • version: 1.66.3
Latest release: over 2 years ago - 48 downloads - 1,457 dependencies
princessmaximacenter/gridss 2.13.2

  • version: 1.62.0
Latest release: over 1 year ago - 119 downloads - 801 dependencies
wilfriedguiblet/fraser v0.1

  • version: 1.58.0
Latest release: over 2 years ago - 27 downloads - 858 dependencies
daemontus/software-cell-oracle latest

  • version: 1.68.0
Latest release: about 2 years ago - 60 downloads - 1,013 dependencies
joshuatobin257/drop latest

  • version: 1.68.0
Latest release: almost 2 years ago - 16 downloads - 840 dependencies
neurogenomicslab/scavenge 1.0.2

  • version: 1.67.1
Latest release: over 2 years ago - 40 downloads - 1,305 dependencies
skchronicles/genome-seek_hla v0.1.0

Official docker image for HLA typing steps in genome-seek

  • version: 1.66.3
Latest release: over 2 years ago - 146 downloads - 1,722 dependencies
alexthiery/archr_macs2_seurat 3.0

  • version: 1.62.0
Latest release: about 2 years ago - 40 downloads - 801 dependencies
uvarc/rstudio tam5xe

  • version: 1.68.0
Latest release: almost 2 years ago - 33 downloads - 1,062 dependencies
ajhodgkinson/mitogwas latest

  • version: 1.68.0
Latest release: almost 2 years ago - 82 downloads - 1,094 dependencies
fgualdr/env_gsea latest

  • version: 1.66.3
Latest release: about 2 years ago - 47 downloads - 566 dependencies
luslab/archr_dev latest

  • version: 1.68.0
Latest release: almost 2 years ago - 42 downloads - 1,873 dependencies
gm088/svm 071123

  • version: 1.68.0
Latest release: over 1 year ago - 41 downloads - 1,497 dependencies
alexthiery/archr_hicdc 3.0

  • version: 1.62.0
Latest release: about 2 years ago - 40 downloads - 822 dependencies
rtibiocloud/neurogenomicslab_mungesumstats v1.7.10_6e16c82

  • version: 1.67.1
Latest release: over 1 year ago - 26 downloads - 1,293 dependencies
alexthiery/archr_dev_macs2 3.0

  • version: 1.62.0
Latest release: about 2 years ago - 33 downloads - 805 dependencies
forest2000/seuratv5 latest

Update Seurat to version 5

  • version: 1.66.3
Latest release: almost 2 years ago - 28 downloads - 1,130 dependencies
btrspg/r-env cache

  • version: 1.68.0
Latest release: 4 months ago - 308 downloads - 2,231 dependencies