zwcdocker/seurat : latest

Latest release: over 3 years ago - 43 downloads - 655 dependencies

JSON

Dependencies

@PKGNAME@ @VERSION@
AnnotationDbi 1.54.1
BH 1.75.0-0
Biobase 2.52.0
BiocFileCache 2.0.0
BiocGenerics 0.38.0
BiocIO 1.2.0
BiocManager 1.30.16
BiocParallel 1.26.2
BiocVersion 3.13.1
Biostrings 2.60.2
CopyscAT 0.30
DBI 1.1.1
DelayedArray 0.18.0
FNN 1.1.3
GenomeInfoDb 1.28.1
GenomeInfoDbData 1.2.6
GenomicAlignments 1.28.0
GenomicRanges 1.44.0
IRanges 2.26.0
KEGGREST 1.32.0
KernSmooth 2.23-20
MASS 7.3-54
Matrix 1.3-3
MatrixGenerics 1.4.2
NMF 0.23.0
R6 2.5.1
RANN 2.6.1
RColorBrewer 1.1-2
RCurl 1.98-1.4
ROCR 1.0-11
RSQLite 2.2.8
RSpectra 0.16-0
Rcpp 1.0.9
RcppAnnoy 0.0.19
RcppArmadillo 0.10.6.0.0
RcppEigen 0.3.3.9.1
RcppProgress 0.4.2
RcppProgressArmadillo 0.2
RcppProgressETA 0.1
RcppProgressExample 0.2
RcppTOML 0.1.7
Rhtslib 1.24.0
Rsamtools 2.8.0
Rtsne 0.15
S4Vectors 0.30.0
SCopeLoomR 0.13.0
Seurat 4.0.4
SeuratDisk 0.0.0.9020
SeuratObject 4.0.2
SummarizedExperiment 1.22.0
XML 3.99-0.10
XVector 0.32.0
abind 1.4-5
askpass 1.1
assertthat 0.2.1
base64enc 0.1-3
base 4.1.0
biomaRt 2.48.3
bit64 4.0.5
bit 4.0.4
bitops 1.0-7
blob 1.2.2
boot 1.3-28
brew 1.0-6
brio 1.1.2
bslib 0.2.5.1
caTools 1.18.2
cachem 1.0.5
callr 3.7.0
changepoint 2.2.2
class 7.3-19
cli 3.0.1
clipr 0.7.1
cluster 2.1.2
codetools 0.2-18
colorspace 2.0-2
commonmark 1.7
compiler 4.1.0
cowplot 1.1.1
cpp11 0.3.1
crayon 1.4.1
credentials 1.3.1
crosstalk 1.1.1
curl 4.3.2
data.table 1.14.2
datasets 4.1.0
dbplyr 2.1.1
deldir 1.0-6
desc 1.3.0
devtools 2.4.2
diffobj 0.3.4
digest 0.6.27
doParallel 1.0.16
docopt 0.7.1
dplyr 1.0.7
dqrng 0.3.0
edgeR 3.34.0
ellipsis 0.3.2
evaluate 0.14
fansi 0.5.0
farver 2.1.0
fastcluster 1.2.3
fastmap 1.1.0
filelock 1.0.2
fitdistrplus 1.1-5
fontawesome 0.3.0
foreach 1.5.1
foreign 0.8-81
formatR 1.11
fs 1.5.0
futile.logger 1.4.3
futile.options 1.0.1
future.apply 1.7.0
future 1.21.0
generics 0.1.0
gert 1.3.1
ggplot2 3.3.5
ggrepel 0.9.1
ggridges 0.5.3
gh 1.3.0
gitcreds 0.1.1
globals 0.14.0
glue 1.4.2
goftest 1.2-2
gplots 3.1.1
grDevices 4.1.0
graphics 4.1.0
grid 4.1.0
gridBase 0.4-7
gridExtra 2.3
gtable 0.3.0
gtools 3.9.2
hdf5r 1.3.6
here 1.0.1
highr 0.9
hms 1.1.0
htmltools 0.5.1.1
htmlwidgets 1.5.3
httpuv 1.6.1
httr 1.4.2
ica 1.0-2
igraph 1.3.5
ini 0.3.1
irlba 2.3.3
isoband 0.2.5
iterators 1.0.13
jquerylib 0.1.4
jsonlite 1.8.0
knitr 1.33
labeling 0.4.2
lambda.r 1.2.4
later 1.2.0
lattice 0.20-44
lazyeval 0.2.2
leiden 0.3.9
lifecycle 1.0.0
limma 3.48.3
listenv 0.8.0
littler 0.3.13
lmtest 0.9-38
locfit 1.5-9.4
magrittr 2.0.3
markdown 1.1
matrixStats 0.60.0
mclust 5.4.7
memoise 2.0.0
methods 4.1.0
mgcv 1.8-35
mime 0.11
miniUI 0.1.1.1
munsell 0.5.0
nlme 3.1-152
nnet 7.3-16
openssl 1.4.4
org.testing.db 0.1
parallel 4.1.0
parallelly 1.27.0
patchwork 1.1.1
pbapply 1.4-3
pillar 1.6.2
pkgbuild 1.2.0
pkgconfig 2.0.3
pkgload 1.2.1
pkgmaker 0.32.2
plogr 0.2.0
plotly 4.9.4.1
plyr 1.8.7
png 0.1-7
polyclip 1.10-0
praise 1.0.0
prettyunits 1.1.1
processx 3.5.2
progress 1.2.2
progressr 0.11.0
promises 1.2.0.1
ps 1.6.0
purrr 0.3.4
rappdirs 0.3.3
rcmdcheck 1.3.3
registry 0.5-1
rematch2 2.1.2
remotes 2.4.0
reshape2 1.4.4
restfulr 0.0.13
reticulate 1.20
rgeos 0.5-9
rjson 0.2.21
rlang 1.0.5
rlist 0.4.6.2
rmarkdown 2.10
rngtools 1.5
roxygen2 7.1.1
rpart 4.1-15
rprojroot 2.0.2
rstudioapi 0.13
rtracklayer 1.52.1
rversions 2.1.1
sass 0.4.0
scales 1.1.1
scattermore 0.7
sctransform 0.3.2
sessioninfo 1.1.1
shiny 1.6.0
sitmo 2.0.1
snow 0.4-3
sourcetools 0.1.7
sp 1.4-5
spatial 7.3-14
spatstat.core 2.3-0
spatstat.data 2.1-0
spatstat.geom 2.4-0
spatstat.random 2.2-0
spatstat.sparse 2.0-0
spatstat.utils 2.2-0
splines 4.1.0
stats4 4.1.0
stats 4.1.0
stringi 1.7.3
stringr 1.4.0
survival 3.2-11
sys 3.4
tcltk 4.1.0
tensor 1.5
testRcppAttributePackage 1.0
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
testthat 3.0.4
tibble 3.1.3
tidyr 1.1.3
tidyselect 1.1.1
tinytex 0.33
tools 4.1.0
translations 4.1.0
usethis 2.0.1
utf8 1.2.2
utils 4.1.0
uwot 0.1.10
vctrs 0.3.8
viridis 0.6.1
viridisLite 0.4.0
waldo 0.2.5
whisker 0.4
withr 2.4.2
xfun 0.25
xml2 1.3.2
xopen 1.0.0
xtable 1.8-4
yaml 2.3.5
zip 2.2.0
zlibbioc 1.38.0
zoo 1.8-9

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ubuntu/libwind0-heimdal 7.7.0 dfsg-1ubuntu1
ubuntu/libx11-6 2:1.6.9-2ubuntu1.2
ubuntu/libx11-data 2:1.6.9-2ubuntu1.2
ubuntu/libx11-xcb1 2:1.6.9-2ubuntu1.2
ubuntu/libxau6 1:1.0.9-0ubuntu1
ubuntu/libxaw7 2:1.0.13-1
ubuntu/libxcb-dri2-0 1.14-2
ubuntu/libxcb-dri3-0 1.14-2
ubuntu/libxcb-glx0 1.14-2
ubuntu/libxcb-present0 1.14-2
ubuntu/libxcb-render0 1.14-2
ubuntu/libxcb-shm0 1.14-2
ubuntu/libxcb-sync1 1.14-2
ubuntu/libxcb-xfixes0 1.14-2
ubuntu/libxcb1 1.14-2
ubuntu/libxdmcp6 1:1.1.3-0ubuntu1
ubuntu/libxext6 2:1.3.4-0ubuntu1
ubuntu/libxfixes3 1:5.0.3-2
ubuntu/libxi6 2:1.7.10-0ubuntu1
ubuntu/libxml2-dev 2.9.10 dfsg-5ubuntu0.20.04.1
ubuntu/libxml2 2.9.10 dfsg-5ubuntu0.20.04.1
ubuntu/libxrender1 1:0.9.10-1
ubuntu/libxshmfence1 1.3-1
ubuntu/libxxf86vm1 1:1.1.4-1build1
ubuntu/libzstd1 1.4.4 dfsg-3ubuntu0.1
ubuntu/linux-libc-dev 5.4.0-80.90
ubuntu/locales 2.31-0ubuntu9.2
ubuntu/login 1:4.8.1-1ubuntu5.20.04
ubuntu/logsave 1.45.5-2ubuntu1
ubuntu/lsb-base 11.1.0ubuntu2
ubuntu/lsb-release 11.1.0ubuntu2
ubuntu/make 4.2.1-1.2
ubuntu/mawk 1.3.4.20200120-2
ubuntu/mime-support 3.64ubuntu1
ubuntu/mount 2.34-0.1ubuntu9.1
ubuntu/ncurses-base 6.2-0ubuntu2
ubuntu/ncurses-bin 6.2-0ubuntu2
ubuntu/netbase 6.1
ubuntu/ocaml-base-nox 4.08.1-8
ubuntu/ocaml-nox 4.08.1-8
ubuntu/openjdk-11-jre-headless 11.0.11 9-0ubuntu2~20.04
ubuntu/openssl 1.1.1f-1ubuntu2.4
ubuntu/passwd 1:4.8.1-1ubuntu5.20.04
ubuntu/perl-base 5.30.0-9ubuntu0.2
ubuntu/perl-modules-5.30 5.30.0-9ubuntu0.2
ubuntu/perl 5.30.0-9ubuntu0.2
ubuntu/preview-latex-style 11.91-2ubuntu2
ubuntu/procps 2:3.3.16-1ubuntu2.2
ubuntu/psmisc 23.3-1
ubuntu/python-pkg-resources 44.0.0-2
ubuntu/python-setuptools 44.0.0-2
ubuntu/python2-minimal 2.7.17-2ubuntu4
ubuntu/python2.7-minimal 2.7.18-1~20.04.1
ubuntu/python2.7 2.7.18-1~20.04.1
ubuntu/python2 2.7.17-2ubuntu4
ubuntu/python3-minimal 3.8.2-0ubuntu2
ubuntu/python3.8-minimal 3.8.10-0ubuntu1~20.04
ubuntu/python3.8 3.8.10-0ubuntu1~20.04
ubuntu/python3 3.8.2-0ubuntu2
ubuntu/readline-common 8.0-4
ubuntu/rstudio-server 1.4.1717
ubuntu/sed 4.7-1
ubuntu/sensible-utils 0.0.12 nmu1
ubuntu/sudo 1.8.31-1ubuntu1.2
ubuntu/sysvinit-utils 2.96-2.1ubuntu1
ubuntu/tar 1.30 dfsg-7ubuntu0.20.04.1
ubuntu/tcl8.6 8.6.10 dfsg-1
ubuntu/tex-common 6.13
ubuntu/tk8.6 8.6.10-1
ubuntu/tzdata 2021a-0ubuntu0.20.04
ubuntu/ubuntu-keyring 2020.02.11.4
ubuntu/ucf 3.0038 nmu1
ubuntu/unzip 6.0-25ubuntu1
ubuntu/util-linux 2.34-0.1ubuntu9.1
ubuntu/wget 1.20.3-1ubuntu1
ubuntu/x11-common 1:7.7 19ubuntu14
ubuntu/xfonts-utils 1:7.7 6
ubuntu/xz-utils 5.2.4-1ubuntu1
ubuntu/zip 3.0-11build1
ubuntu/zlib1g-dev 1:1.2.11.dfsg-2ubuntu1.2
ubuntu/zlib1g 1:1.2.11.dfsg-2ubuntu1.2

bash 5.0.17

com.ibm.icu.base:base 4.4
com.ibm.icu.charset:icu4j-charset 60.2
com.ibm.icu.localespi:icu4j-localespi 60.2
com.ibm.icu:icu4j 60.2
com.ibm.icu:icu 4.4

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