vanallenlab/sv-pipeline : 062bf6d
Ubuntu 22.04 LTS
Latest release: over 1 year ago - 26,345 downloads - 1,231 dependencies
JSONDependencies
- ubuntu/adduser 3.118ubuntu5
- ubuntu/apt-transport-https 2.4.5
- ubuntu/apt 2.4.5
- ubuntu/base-files 12ubuntu4.1
- ubuntu/base-passwd 3.5.52build1
- ubuntu/bash 5.1-6ubuntu1
- ubuntu/bsdutils 1:2.37.2-4ubuntu3
- ubuntu/bzip2 1.0.8-5build1
- ubuntu/ca-certificates-java 20190909
- ubuntu/ca-certificates 20211016
- ubuntu/coreutils 8.32-4.1ubuntu1
- ubuntu/curl 7.81.0-1ubuntu1.2
- ubuntu/dash 0.5.11 git20210903 057cd650a4ed-3build1
- ubuntu/debconf 1.5.79ubuntu1
- ubuntu/debianutils 5.5-1ubuntu2
- ubuntu/diffutils 1:3.8-0ubuntu2
- ubuntu/dpkg 1.21.1ubuntu2.1
- ubuntu/e2fsprogs 1.46.5-2ubuntu1.1
- ubuntu/file 1:5.41-3
- ubuntu/findutils 4.8.0-1ubuntu3
- ubuntu/fontconfig-config 2.13.1-4.2ubuntu5
- ubuntu/fontconfig 2.13.1-4.2ubuntu5
- ubuntu/fonts-dejavu-core 2.37-2build1
- ubuntu/gawk 1:5.1.0-1build3
- ubuntu/gcc-12-base 12.1.0-2ubuntu1~22.04
- ubuntu/gpgv 2.2.27-3ubuntu2
- ubuntu/grep 3.7-1build1
- ubuntu/gzip 1.10-4ubuntu4
- ubuntu/hostname 3.23ubuntu2
- ubuntu/init-system-helpers 1.62
- ubuntu/java-common 0.72build2
- ubuntu/less 590-1build1
- ubuntu/libacl1 2.3.1-1
- ubuntu/libapt-pkg6.0 2.4.5
- ubuntu/libatlas3-base 3.10.3-12ubuntu1
- ubuntu/libattr1 1:2.5.1-1build1
- ubuntu/libaudit-common 1:3.0.7-1build1
- ubuntu/libaudit1 1:3.0.7-1build1
- ubuntu/libavahi-client3 0.8-5ubuntu5
- ubuntu/libavahi-common-data 0.8-5ubuntu5
- ubuntu/libavahi-common3 0.8-5ubuntu5
- ubuntu/libblas3 3.10.0-2ubuntu1
- ubuntu/libblkid1 2.37.2-4ubuntu3
- ubuntu/libbrotli1 1.0.9-2build6
- ubuntu/libbsd0 0.11.5-1
- ubuntu/libbz2-1.0 1.0.8-5build1
- ubuntu/libc-bin 2.35-0ubuntu3
- ubuntu/libc6 2.35-0ubuntu3.1
- ubuntu/libcairo2 1.16.0-5ubuntu2
- ubuntu/libcap-ng0 0.7.9-2.2build3
- ubuntu/libcap2 1:2.44-1build3
- ubuntu/libclass-method-modifiers-perl 2.13-1
- ubuntu/libcom-err2 1.46.5-2ubuntu1.1
- ubuntu/libcpanel-json-xs-perl 4.27-1build1
- ubuntu/libcrypt1 1:4.4.27-1
- ubuntu/libcups2 2.4.1op1-1ubuntu4.1
- ubuntu/libcurl4 7.81.0-1ubuntu1.2
- ubuntu/libdata-dumper-compact-perl 0.005002-1
- ubuntu/libdatrie1 0.2.13-2
- ubuntu/libdb5.3 5.3.28 dfsg1-0.8ubuntu3
- ubuntu/libdbus-1-3 1.12.20-2ubuntu4
- ubuntu/libdebconfclient0 0.261ubuntu1
- ubuntu/libdeflate0 1.10-2
- ubuntu/libexpat1 2.4.7-1
- ubuntu/libext2fs2 1.46.5-2ubuntu1.1
- ubuntu/libffi8 3.4.2-4
- ubuntu/libfftw3-3 3.3.8-2ubuntu8
- ubuntu/libfftw3-double3 3.3.8-2ubuntu8
- ubuntu/libfftw3-long3 3.3.8-2ubuntu8
- ubuntu/libfftw3-single3 3.3.8-2ubuntu8
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- ubuntu/libfreetype6 2.11.1 dfsg-1build1
- ubuntu/libfribidi0 1.0.8-2ubuntu3.1
- ubuntu/libgcc-s1 12.1.0-2ubuntu1~22.04
- ubuntu/libgcrypt20 1.9.4-3ubuntu3
- ubuntu/libgdbm-compat4 1.23-1
- ubuntu/libgdbm6 1.23-1
- ubuntu/libgfortran5 12.1.0-2ubuntu1~22.04
- ubuntu/libgit2-1.1 1.1.0 dfsg.1-4.1build1
- ubuntu/libglib2.0-0 2.72.1-1
- ubuntu/libgmp10 2:6.2.1 dfsg-3ubuntu1
- ubuntu/libgnutls30 3.7.3-4ubuntu1
- ubuntu/libgomp1 12.1.0-2ubuntu1~22.04
- ubuntu/libgpg-error0 1.43-3
- ubuntu/libgraphite2-3 1.3.14-1build2
- ubuntu/libgssapi-krb5-2 1.19.2-2
- ubuntu/libharfbuzz0b 2.7.4-1ubuntu3
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- ubuntu/libjpeg8 8c-2ubuntu10
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- ubuntu/liblcms2-2 2.12~rc1-2build2
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- ubuntu/liblz4-1 1.9.3-2build2
- ubuntu/liblzma5 5.2.5-2ubuntu1
- ubuntu/libmagic-mgc 1:5.41-3
- ubuntu/libmagic1 1:5.41-3
- ubuntu/libmbedcrypto7 2.28.0-1build1
- ubuntu/libmbedtls14 2.28.0-1build1
- ubuntu/libmbedx509-1 2.28.0-1build1
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- ubuntu/libpcsclite1 1.9.5-3
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- ubuntu/libpixman-1-0 0.40.0-1build4
- ubuntu/libpng16-16 1.6.37-3build5
- ubuntu/libprocps8 2:3.3.17-6ubuntu2
- ubuntu/libpsl5 0.21.0-1.2build2
- ubuntu/libquadmath0 12.1.0-2ubuntu1~22.04
- ubuntu/libreadline8 8.1.2-1
- ubuntu/librtmp1 2.4 20151223.gitfa8646d.1-2build4
- ubuntu/libsasl2-2 2.1.27 dfsg2-3ubuntu1
- ubuntu/libsasl2-modules-db 2.1.27 dfsg2-3ubuntu1
- ubuntu/libseccomp2 2.5.3-2ubuntu2
- ubuntu/libselinux1 3.3-1build2
- ubuntu/libsemanage-common 3.3-1build2
- ubuntu/libsemanage2 3.3-1build2
- ubuntu/libsepol2 3.3-1build1
- ubuntu/libsigsegv2 2.13-1ubuntu3
- ubuntu/libsm6 2:1.2.3-1build2
- ubuntu/libsmartcols1 2.37.2-4ubuntu3
- ubuntu/libsqlite3-0 3.37.2-2
- ubuntu/libss2 1.46.5-2ubuntu1.1
- ubuntu/libssh-4 0.9.6-2build1
- ubuntu/libssh2-1 1.10.0-3
- ubuntu/libssl3 3.0.2-0ubuntu1.2
- ubuntu/libstdc 6 12.1.0-2ubuntu1~22.04
- ubuntu/libstrictures-perl 2.000006-1
- ubuntu/libsystemd0 249.11-0ubuntu3.1
- ubuntu/libtasn1-6 4.18.0-4build1
- ubuntu/libtcl8.6 8.6.12 dfsg-1build1
- ubuntu/libthai-data 0.1.29-1build1
- ubuntu/libthai0 0.1.29-1build1
- ubuntu/libtiff5 4.3.0-6
- ubuntu/libtinfo6 6.3-2
- ubuntu/libtirpc-common 1.3.2-2ubuntu0.1
- ubuntu/libtirpc3 1.3.2-2ubuntu0.1
- ubuntu/libtk8.6 8.6.12-1build1
- ubuntu/libudev1 249.11-0ubuntu3.1
- ubuntu/libunistring2 1.0-1
- ubuntu/libuuid1 2.37.2-4ubuntu3
- ubuntu/libwebp7 1.2.2-2
- ubuntu/libx11-6 2:1.7.5-1
- ubuntu/libx11-data 2:1.7.5-1
- ubuntu/libxau6 1:1.0.9-1build5
- ubuntu/libxcb-render0 1.14-3ubuntu3
- ubuntu/libxcb-shm0 1.14-3ubuntu3
- ubuntu/libxcb1 1.14-3ubuntu3
- ubuntu/libxdmcp6 1:1.1.3-0ubuntu5
- ubuntu/libxext6 2:1.3.4-1build1
- ubuntu/libxft2 2.3.4-1
- ubuntu/libxi6 2:1.8-1build1
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- ubuntu/libxrender1 1:0.9.10-1build4
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- ubuntu/libxtst6 2:1.2.3-1build4
- ubuntu/libxxhash0 0.8.1-1
- ubuntu/libzstd1 1.4.8 dfsg-3build1
- ubuntu/login 1:4.8.1-2ubuntu2
- ubuntu/logsave 1.46.5-2ubuntu1.1
- ubuntu/lsb-base 11.1.0ubuntu4
- ubuntu/mawk 1.3.4.20200120-3
- ubuntu/mount 2.37.2-4ubuntu3
- ubuntu/ncurses-base 6.3-2
- ubuntu/ncurses-bin 6.3-2
- ubuntu/openjdk-8-jre-headless 8u352-ga-1~22.04
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- ubuntu/passwd 1:4.8.1-2ubuntu2
- ubuntu/perl-base 5.34.0-3ubuntu1
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- ubuntu/procps 2:3.3.17-6ubuntu2
- ubuntu/readline-common 8.1.2-1
- ubuntu/sed 4.8-1ubuntu2
- ubuntu/sensible-utils 0.0.17
- ubuntu/shared-mime-info 2.1-2
- ubuntu/sysvinit-utils 3.01-1ubuntu1
- ubuntu/tar 1.34 dfsg-1build3
- ubuntu/tzdata 2022a-0ubuntu1
- ubuntu/ubuntu-keyring 2021.03.26
- ubuntu/ucf 3.0043
- ubuntu/unzip 6.0-26ubuntu3
- ubuntu/usrmerge 25ubuntu2
- ubuntu/util-linux 2.37.2-4ubuntu3
- ubuntu/wget 1.21.2-2ubuntu1
- ubuntu/x11-common 1:7.7 23ubuntu2
- ubuntu/zip 3.0-12build2
- ubuntu/zlib1g 1:1.2.11.dfsg-2ubuntu9
- log4j:log4j 1.2.17
- JLargeArrays:JLargeArrays 1.5
- RoaringBitmap:RoaringBitmap 0.9.0
- US_export_policy:US_export_policy *
- aopalliance:aopalliance 1.0
- args4j:args4j 2.33
- arpack_combined_all:arpack_combined_all 0.1
- automaton:automaton 1.11-8
- charsets:charsets *
- cldrdata:cldrdata *
- com.carrotsearch:hppc 0.7.2
- com.clearspring.analytics:stream 2.7.0
- com.clearspring.analytics:stream 2.9.6
- com.esotericsoftware:kryo-shaded 4.0.2
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- com.fasterxml.jackson.core:jackson-annotations 2.10.0
- com.fasterxml.jackson.core:jackson-annotations 2.4.0
- com.fasterxml.jackson.core:jackson-annotations 2.9.8
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- com.fasterxml.jackson.core:jackson-core 2.9.9
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- com.fasterxml.jackson.module.jackson.module.scala:jackson-module-scala_2.12 2.10.0
- io.dropwizard.metrics:metrics-json 4.1.1
- com.fasterxml.jackson.module:jackson-module-jaxb-annotations 2.10.0
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- com.github.fommil.netlib:netlib-native_ref-linux-i686 1.1
- com.github.fommil.netlib:netlib-native_ref-linux-x86_64 1.1
- com.github.fommil.netlib:netlib-native_ref-osx-x86_64 1.1
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- com.github.fommil.netlib:netlib-native_system-win-i686 1.1
- com.github.fommil.netlib:netlib-native_system-win-x86_64 1.1
- com.github.fommil:jniloader 1.1
- com.github.joshelser:dropwizard-metrics-hadoop-metrics2-reporter 0.1.2
- com.github.jsr203hadoop:jsr203hadoop 1.0.3
- com.github.luben:zstd-jni 1.4.8-1
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- com.google.api.grpc:proto-google-cloud-bigquerystorage-v1beta2 0.105.1
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- com.google.apis:google-api-services-bigquery v2-rev20200818-1.30.10
- com.google.apis:google-api-services-storage v1-rev135-1.24.1
- com.google.apis:google-api-services-storage v1-rev20190910-1.30.3
- com.google.apis:google-api-services-storage v1-rev20200226-1.30.9
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- com.google.auth:google-auth-library-credentials 0.20.0
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- local_policy:local_policy *
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- com.google.auto.value:auto-value-annotations 1.6.6
- com.google.auto.value:auto-value-annotations 1.7
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- com.google.cloud.bigdataoss:util 1.9.4
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- com.google.cloud:google-cloud-bigquerystorage 1.5.1
- com.google.cloud:google-cloud-core-http 1.91.3
- com.google.cloud:google-cloud-core-http 1.93.3
- com.google.cloud:google-cloud-core 1.91.3
- com.google.cloud:google-cloud-core 1.93.3
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- com.google.cloud:google-cloud-storage 1.99.0
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- com.google.code.gson:gson 2.8.6
- com.google.errorprone:error_prone_annotations 2.3.3
- com.google.errorprone:error_prone_annotations 2.3.4
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- com.google.guava:guava 11.0.2
- com.google.guava:guava 14.0.1
- com.google.guava:guava 27.1-jre
- com.google.guava:guava 28.2-android
- com.google.guava:listenablefuture 9999.0-empty-to-avoid-conflict-with-guava
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- com.google.http-client:google-http-client-jackson2 1.34.2
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- dnsns:dnsns *
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- hail-all-spark:hail-all-spark 0.0.1-SNAPSHOT
- icedtea-sound:icedtea-sound *
- io.airlift:aircompressor 0.10
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- io.dropwizard.metrics:metrics-json 3.1.5
- localedata:localedata *
- io.dropwizard.metrics:metrics-jvm 3.1.5
- io.dropwizard.metrics:metrics-jvm 4.1.1
- io.fabric8:kubernetes-client 4.12.0
- io.fabric8:kubernetes-model-admissionregistration 4.12.0
- io.fabric8:kubernetes-model-apiextensions 4.12.0
- io.fabric8:kubernetes-model-apps 4.12.0
- io.fabric8:kubernetes-model-autoscaling 4.12.0
- io.fabric8:kubernetes-model-batch 4.12.0
- io.fabric8:kubernetes-model-certificates 4.12.0
- io.fabric8:kubernetes-model-common 4.12.0
- io.fabric8:kubernetes-model-coordination 4.12.0
- io.fabric8:kubernetes-model-core 4.12.0
- io.fabric8:kubernetes-model-discovery 4.12.0
- io.fabric8:kubernetes-model-events 4.12.0
- io.fabric8:kubernetes-model-extensions 4.12.0
- io.fabric8:kubernetes-model-metrics 4.12.0
- io.fabric8:kubernetes-model-networking 4.12.0
- io.fabric8:kubernetes-model-policy 4.12.0
- io.fabric8:kubernetes-model-rbac 4.12.0
- io.fabric8:kubernetes-model-scheduling 4.12.0
- io.fabric8:kubernetes-model-settings 4.12.0
- io.fabric8:kubernetes-model-storageclass 4.12.0
- io.fabric8:zjsonpatch 0.3.0
- io.netty:netty-all 4.1.42.Final
- io.netty:netty-all 4.1.51.Final
- io.netty:netty-buffer 4.1.48.Final
- io.netty:netty-codec-http2 4.1.48.Final
- io.netty:netty-codec-http 4.1.48.Final
- io.netty:netty-codec-socks 4.1.48.Final
- io.netty:netty-codec 4.1.48.Final
- io.netty:netty-common 4.1.48.Final
- io.netty:netty-handler-proxy 4.1.48.Final
- io.netty:netty-handler 4.1.48.Final
- io.netty:netty-resolver 4.1.48.Final
- io.netty:netty-tcnative-boringssl-static 2.0.30.Final
- io.netty:netty-transport-native-epoll 4.1.48.Final
- io.netty:netty-transport-native-unix-common 4.1.48.Final
- io.netty:netty-transport 4.1.48.Final
- io.netty:netty 3.10.6.Final
- jaccess:jaccess *
- jackson-core-asl:jackson-core-asl 1.9.13
- jackson-mapper-asl:jackson-mapper-asl 1.9.13
- jakarta.validation-api:jakarta.validation-api 2.0.2
- jakarta.ws.rs-api:jakarta.ws.rs-api 2.1.6
- jakarta.xml.bind-api:jakarta.xml.bind-api 2.3.2
- jarhdf5:jarhdf5 2.11.0
- javolution:javolution 5.5.1
- jaxb-api:jaxb-api 2.2.11
- jaxb-api:jaxb-api 2.3.1
- jdo-api:jdo-api 3.0.1
- jfr:jfr 1.8.0_352
- jline:jline 0.9.94
- jline:jline 2.14.6
- joda-time:joda-time 2.0
- joda-time:joda-time 2.9.9
- jsr305:jsr305 3.0.0
- jsr311-api:jsr311-api 1.1.1
- jsse:jsse 1.8.0_352
- jta:jta 1.1
- libfb303:libfb303 0.9.3
- management-agent:management-agent *
- nashorn:nashorn 1.8.0_352-8u352-ga-1~22.04-b08
- net.grey-panther:natural-comparator 1.1
- net.java:javax.annotation-api 1.3.2
- net.java:javax.servlet-api 3.1.0
- net.java:javax.ws.rs-api 2.0.1
- net.java:jaxb-api 2.2.11
- net.minidev:accessors-smart 1.2
- net.minidev:json-smart 2.3
- net.razorvine:pyrolite 4.13
- net.razorvine:pyrolite 4.30
- net.sf.jopt-simple:jopt-simple 5.0.3
- net.sf.jpam:jpam 1.1
- net.sf.opencsv:opencsv 2.3
- net.sf.py4j:py4j 0.10.7
- net.sf.py4j:py4j 0.10.9
- net.sf.supercsv:super-csv 2.2.0
- org.aeonbits.owner:owner 1.0.9
- org.antlr:ST4 4.0.4
- org.antlr:antlr-runtime 3.5.2
- org.antlr:antlr4-runtime 4.7
- org.antlr:antlr4-runtime 4.8-1
- org.apache.arrow:arrow-format 0.10.0
- org.apache.arrow:arrow-format 2.0.0
- org.apache.arrow:arrow-memory-core 2.0.0
- org.apache.arrow:arrow-memory-netty 2.0.0
- org.apache.arrow:arrow-memory 0.10.0
- org.apache.arrow:arrow-vector 0.10.0
- org.apache.arrow:arrow-vector 2.0.0
- org.apache.avro:avro-guava-dependencies 1.8.2
- org.apache.avro:avro-ipc 1.8.2
- org.apache.avro:avro-mapred 1.8.2
- org.apache.avro:avro 1.10.2
- org.apache.avro:avro 1.8.2
- org.apache.commons:commons-collections4 4.3
- org.apache.commons:commons-compress 1.19
- org.apache.commons:commons-compress 1.20
- org.apache.commons:commons-compress 1.21
- org.apache.commons:commons-configuration2 2.1.1
- org.apache.commons:commons-configuration2 2.4
- org.apache.commons:commons-crypto 1.0.0
- org.apache.commons:commons-crypto 1.1.0
- org.apache.commons:commons-jexl 2.1.1
- org.apache.commons:commons-lang3 3.10
- org.apache.commons:commons-lang3 3.5
- org.apache.commons:commons-lang3 3.8.1
- org.apache.commons:commons-math3 3.4.1
- org.apache.commons:commons-math3 3.5
- org.apache.commons:commons-text 1.6
- org.apache.commons:commons-vfs2 2.0
- org.apache.curator:curator-client 2.13.0
- org.apache.curator:curator-framework 2.13.0
- org.apache.curator:curator-recipes 2.13.0
- org.apache.derby.osgi.EmbeddedActivator:derby 10.12.1.1
- org.apache.geronimo.specs:geronimo-jcache_1.0_spec 1.0-alpha-1
- org.apache.hadoop.zookeeper:zookeeper 3.4.14
- org.apache.hadoop:hadoop-annotations 3.2.0
- org.apache.hadoop:hadoop-annotations 3.2.1
- org.apache.hadoop:hadoop-auth 3.2.0
- org.apache.hadoop:hadoop-auth 3.2.1
- org.apache.hadoop:hadoop-client 3.2.0
- org.apache.hadoop:hadoop-client 3.2.1
- org.apache.hadoop:hadoop-common 3.2.0
- org.apache.hadoop:hadoop-common 3.2.1
- org.apache.hadoop:hadoop-hdfs-client 3.2.0
- org.apache.hadoop:hadoop-hdfs-client 3.2.1
- org.apache.hadoop:hadoop-mapreduce-client-common 3.2.0
- org.apache.hadoop:hadoop-mapreduce-client-common 3.2.1
- org.apache.hadoop:hadoop-mapreduce-client-core 3.2.0
- org.apache.hadoop:hadoop-mapreduce-client-core 3.2.1
- org.apache.hadoop:hadoop-mapreduce-client-jobclient 3.2.0
- org.apache.hadoop:hadoop-mapreduce-client-jobclient 3.2.1
- org.apache.hadoop:hadoop-yarn-api 3.2.0
- org.apache.hadoop:hadoop-yarn-api 3.2.1
- org.apache.hadoop:hadoop-yarn-client 3.2.0
- org.apache.hadoop:hadoop-yarn-client 3.2.1
- org.apache.hadoop:hadoop-yarn-common 3.2.0
- org.apache.hadoop:hadoop-yarn-common 3.2.1
- org.apache.hadoop:hadoop-yarn-registry 3.2.0
- org.apache.hadoop:hadoop-yarn-server-common 3.2.0
- org.apache.hadoop:hadoop-yarn-server-web-proxy 3.2.0
- org.apache.hive.shims:hive-shims-0.23 2.3.7
- org.apache.hive.shims:hive-shims-common 2.3.7
- org.apache.hive.shims:hive-shims-scheduler 2.3.7
- org.apache.hive:hive-beeline 2.3.7
- org.apache.hive:hive-cli 2.3.7
- org.apache.hive:hive-common 2.3.7
- org.apache.hive:hive-exec 2.3.7
- org.apache.hive:hive-jdbc 2.3.7
- org.apache.hive:hive-llap-common 2.3.7
- org.apache.hive:hive-metastore 2.3.7
- org.apache.hive:hive-serde 2.3.7
- org.apache.hive:hive-service-rpc 3.1.2
- org.apache.hive:hive-shims 2.3.7
- org.apache.hive:hive-storage-api 2.6.0
- org.apache.hive:hive-storage-api 2.7.2
- org.apache.hive:hive-vector-code-gen 2.3.7
- org.apache.htrace:htrace-core4 4.1.0-incubating
- org.apache.httpcomponents:httpclient 4.5.10
- org.apache.httpcomponents:httpclient 4.5.13
- org.apache.httpcomponents:httpclient 4.5.6
- org.apache.httpcomponents:httpcore 4.4.12
- org.apache.httpcomponents:httpcore 4.4.14
- org.apache.ivy:ivy 2.4.0
- org.apache.kerby:kerb-admin 1.0.1
- org.apache.kerby:kerb-client 1.0.1
- org.apache.kerby:kerb-common 1.0.1
- org.apache.kerby:kerb-core 1.0.1
- org.apache.kerby:kerb-crypto 1.0.1
- org.apache.kerby:kerb-identity 1.0.1
- org.apache.kerby:kerb-server 1.0.1
- org.apache.kerby:kerb-simplekdc 1.0.1
- org.apache.kerby:kerb-util 1.0.1
- org.apache.kerby:kerby-asn1 1.0.1
- org.apache.kerby:kerby-config 1.0.1
- org.apache.kerby:kerby-pkix 1.0.1
- org.apache.kerby:kerby-util 1.0.1
- org.apache.kerby:kerby-xdr 1.0.1
- org.apache.kerby:token-provider 1.0.1
- org.apache.logging.log4j:log4j-api 2.5
- org.apache.logging.log4j:log4j-core 2.5
- org.apache.logging.log4j:log4j-jcl 2.3
- org.apache.maven.scm:maven-scm-api 1.4
- org.apache.maven.scm:maven-scm-provider-svn-commons 1.4
- org.apache.maven.scm:maven-scm-provider-svnexe 1.4
- org.apache.mesos:mesos 1.4.0
- org.apache.orc:orc-core 1.5.13
- org.apache.orc:orc-core 1.5.5
- org.apache.orc:orc-mapreduce 1.5.13
- org.apache.orc:orc-mapreduce 1.5.5
- org.apache.orc:orc-shims 1.5.13
- org.apache.orc:orc-shims 1.5.5
- org.apache.oro:oro 2.0.8
- org.apache.parquet:parquet-avro 1.10.1
- org.apache.parquet:parquet-column 1.10.1
- org.apache.parquet:parquet-common 1.10.1
- org.apache.parquet:parquet-encoding 1.10.1
- org.apache.parquet:parquet-format 2.4.0
- org.apache.parquet:parquet-hadoop 1.10.1
- org.apache.parquet:parquet-jackson 1.10.1
- org.apache.spark:spark-catalyst_2.11 2.4.5
- org.apache.spark:spark-catalyst_2.12 3.1.3
- org.apache.spark:spark-core_2.11 2.4.5
- org.apache.spark:spark-core_2.12 3.1.3
- org.apache.spark:spark-graphx_2.11 2.4.5
- org.apache.spark:spark-graphx_2.12 3.1.3
- org.apache.spark:spark-hive-thriftserver_2.12 3.1.3
- org.apache.spark:spark-hive_2.12 3.1.3
- org.apache.spark:spark-kubernetes_2.12 3.1.3
- org.apache.spark:spark-kvstore_2.11 2.4.5
- org.apache.spark:spark-kvstore_2.12 3.1.3
- org.apache.spark:spark-launcher_2.11 2.4.5
- org.apache.spark:spark-launcher_2.12 3.1.3
- org.apache.spark:spark-mesos_2.12 3.1.3
- org.apache.spark:spark-mllib-local_2.11 2.4.5
- org.apache.spark:spark-mllib-local_2.12 3.1.3
- org.apache.spark:spark-mllib_2.11 2.4.5
- org.apache.spark:spark-mllib_2.12 3.1.3
- org.apache.spark:spark-network-common_2.11 2.4.5
- org.apache.spark:spark-network-common_2.12 3.1.3
- org.apache.spark:spark-network-shuffle_2.11 2.4.5
- org.apache.spark:spark-network-shuffle_2.12 3.1.3
- org.apache.spark:spark-repl_2.12 3.1.3
- org.apache.spark:spark-sketch_2.11 2.4.5
- org.apache.spark:spark-sketch_2.12 3.1.3
- org.apache.spark:spark-sql_2.11 2.4.5
- org.apache.spark:spark-sql_2.12 3.1.3
- org.apache.spark:spark-streaming_2.11 2.4.5
- org.apache.spark:spark-streaming_2.12 3.1.3
- org.apache.spark:spark-tags_2.11 2.4.5
- org.apache.spark:spark-tags_2.12 3.1.3
- org.apache.spark:spark-unsafe_2.11 2.4.5
- org.apache.spark:spark-unsafe_2.12 3.1.3
- org.apache.spark:spark-yarn_2.12 3.1.3
- org.apache.thrift:libthrift 0.12.0
- org.apache.xbean:xbean-asm-util 4.8
- org.apache.xbean:xbean-asm6-shaded 4.8
- org.apache.xbean:xbean-asm7-shaded 4.15
- org.apache.yetus:audience-annotations 0.5.0
- org.apache:commons-httpclient 3.1
- org.apache:jsp-api 2.1
- org.apache:velocity 1.5
- org.bdgenomics.adam:adam-codegen-spark2_2.11 0.28.0
- org.bdgenomics.adam:adam-core-spark2_2.11 0.28.0
- org.bdgenomics.bdg-formats:bdg-formats 0.13.0
- org.bdgenomics.utils:utils-cli-spark2_2.11 0.2.15
- org.bdgenomics.utils:utils-intervalrdd-spark2_2.11 0.2.15
- org.bdgenomics.utils:utils-io-spark2_2.11 0.2.15
- org.bdgenomics.utils:utils-metrics-spark2_2.11 0.2.15
- org.bdgenomics.utils:utils-misc-spark2_2.11 0.2.15
- org.broadinstitute.hellbender.Main:gatk 4.1.8.1-90-ga33bf19-SNAPSHOT
- org.broadinstitute.svpipeline.CleanVCFPart1:CleanVCFPart1 *
- org.broadinstitute.svpipeline.StitchFragmentedCNVs:StitchFragmentedCNVs *
- org.codehaus.janino:commons-compiler 3.0.16
- org.codehaus.janino:commons-compiler 3.0.9
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- org.codehaus.jettison:jettison 1.1
- org.codehaus.mojo:animal-sniffer-annotations 1.18
- org.codehaus.plexus:plexus-interpolation 1.0
- org.codehaus.plexus:plexus-utils 1.5.6
- org.codehaus.woodstox:stax2-api 3.1.4
- org.datanucleus:datanucleus-api-jdo 4.2.4
- org.datanucleus:datanucleus-core 4.1.17
- org.datanucleus:datanucleus-rdbms 4.1.19
- org.datanucleus:javax.jdo 3.2.0-m3
- org.debian.security.UpdateCertificates:ca-certificates-java *
- org.disq-bio:disq 0.3.6
- org.eclipse.jetty:jetty-client 9.3.27.v20190418
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- org.eclipse.jetty:jetty-continuation 9.4.40.v20210413
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- org.eclipse.jetty:jetty-xml 9.3.24.v20180605
- org.eclipse:jakarta.servlet-api 4.0.3
- org.ehcache.ehcache:ehcache 3.3.1
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- org.glassfish.hk2.external:aopalliance-repackaged 2.4.0-b34
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- org.glassfish.jersey.core:jersey-server 2.30
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- org.jodd.core:jodd-core 3.5.2
- org.jpmml:pmml-model 1.2.15
- org.jpmml:pmml-model 1.4.8
- org.jpmml:pmml-schema 1.2.15
- org.json:json 20200518
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- org.json4s:json4s-scalap_2.12 3.7.0-M5
- org.jvnet:tiger-types 1.4
- org.lz4.java:lz4-java 1.7.1
- org.objenesis:objenesis 2.6
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- org.ojalgo:ojalgo 44.0.0
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- sizeof-agent:sizeof-agent *
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