trust1/bethesda : light

Brain tumor BethesdaV2 and EPIC (Bethesda v1) classifier box

Latest release: about 3 years ago - 38 downloads - 840 dependencies

Dependencies

@PKGNAME@ @PKGVERSION@
@PKGNAME@ @VERSION@
AnnotationDbi 1.52.0
BH 1.81.0-1
Biobase 2.50.0
BiocFileCache 1.14.0
BiocGenerics 0.36.1
BiocManager 1.30.20
BiocParallel 1.24.1
BiocVersion 3.12.0
Biostrings 2.58.0
DBI 1.1.3
DNAcopy 1.64.0
DelayedArray 0.16.3
DelayedMatrixStats 1.12.3
FDb.InfiniumMethylation.hg19 2.2.0
FNN 1.1.3.1
GEOquery 2.58.0
GenomeInfoDb 1.26.7
GenomeInfoDbData 1.2.4
GenomicAlignments 1.26.0
GenomicFeatures 1.42.3
GenomicRanges 1.42.0
HDF5Array 1.18.1
IRanges 2.24.1
IlluminaHumanMethylation450kanno.ilmn12.hg19 0.6.0
IlluminaHumanMethylation450kmanifest 0.4.0
IlluminaHumanMethylationEPICanno.ilm10b2.hg19 0.6.0
IlluminaHumanMethylationEPICanno.ilm10b4.hg19 0.6.0
IlluminaHumanMethylationEPICmanifest 0.3.0
IlluminaHumanMethylationEPICv2manifest 0.1.0
KernSmooth 2.23-20
LUMP 0.0.0.9000
MASS 7.3-58.1
Matrix 1.5-1
MatrixGenerics 1.2.1
R6 2.5.1
RColorBrewer 1.1-3
RCurl 1.98-1.10
RFpurify 0.1.2
RSQLite 2.3.0
RSpectra 0.16-1
Rcpp 1.0.10
RcppAnnoy 0.0.19
RcppArmadillo 0.11.4.0.1
RcppEigen 0.3.3.9.2
RcppGSL 0.3.11
RcppGSLExample 0.0.3
RcppProgress 0.4.2
RcppProgressArmadillo 0.2
RcppProgressETA 0.1
RcppProgressExample 0.2
RcppZiggurat 0.1.6
Rfast 2.0.6
Rhdf5lib 1.12.1
Rhtslib 1.22.0
Rsamtools 2.6.0
S4Vectors 0.28.1
SummarizedExperiment 1.20.0
TxDb.Hsapiens.UCSC.hg19.knownGene 3.2.2
XML 3.99-0.13
XVector 0.30.0
ade4 1.7-22
affy 1.68.0
affyio 1.60.0
annotate 1.68.0
askpass 1.1
assertthat 0.2.1
backports 1.4.1
base64 2.0.1
base64enc 0.1-3
base 4.0.5
beanplot 1.3.1
biomaRt 2.46.3
bit64 4.0.5
bit 4.0.5
bitops 1.0-7
blob 1.2.3
boot 1.3-28
brew 1.0-8
brio 1.1.3
broom 1.0.1
bslib 0.4.0
bumphunter 1.32.0
cachem 1.0.7
callr 3.7.3
cellranger 1.1.0
class 7.3-20
cli 3.6.0
clipr 0.8.0
cluster 2.1.4
codetools 0.2-18
colorspace 2.1-0
commonmark 1.8.1
compiler 4.0.5
conumee 1.24.0
cpp11 0.4.3
crayon 1.5.2
credentials 1.3.2
crosstalk 1.2.0
curl 5.0.0
data.table 1.14.8
datasets 4.0.5
dbplyr 2.3.1
desc 1.4.2
devtools 2.4.5
diffobj 0.3.5
digest 0.6.31
doParallel 1.0.17
doRNG 1.8.6
docopt 0.7.1
downlit 0.4.2
dplyr 1.1.0
dqrng 0.3.0
dtplyr 1.2.2
e1071 1.7-13
ellipsis 0.3.2
evaluate 0.20
fansi 1.0.4
farver 2.1.1
fastmap 1.1.1
fontawesome 0.5.0
forcats 0.5.2
foreach 1.5.2
foreign 0.8-83
formatR 1.14
formattable 0.2.1
fs 1.6.1
futile.logger 1.4.3
futile.options 1.0.1
gapminder 0.3.0
gargle 1.2.1
genefilter 1.72.1
generics 0.1.3
gert 1.9.2
ggplot2 3.3.6
ggrepel 0.9.1
gh 1.4.0
gitcreds 0.1.2
glmnet 4.1-4
glue 1.6.2
googledrive 2.0.0
googlesheets4 1.0.1
grDevices 4.0.5
graphics 4.0.5
grid 4.0.5
gridExtra 2.3
gtable 0.3.1
h2o 3.32.1.3
haven 2.5.1
highr 0.9
hms 1.1.2
htmltools 0.5.4
htmlwidgets 1.5.4
httpuv 1.6.9
httr2 0.2.2
httr 1.4.5
ids 1.0.1
illuminaio 0.32.0
ini 0.3.1
irlba 2.3.5.1
isoband 0.2.7
iterators 1.0.14
jquerylib 0.1.4
jsonlite 1.8.4
kableExtra 1.3.4
knitr 1.40
labeling 0.4.2
lambda.r 1.2.4
later 1.3.0
lattice 0.20-45
lazyeval 0.2.2
lemon 0.4.5
lifecycle 1.0.3
limma 3.46.0
littler 0.3.16
locfit 1.5-9.4
lubridate 1.8.0
lumi 2.42.0
magrittr 2.0.3
matrixStats 0.63.0
mclust 6.0.0
memoise 2.0.1
methods 4.0.5
methylumi 2.36.0
mgcv 1.8-40
mgmtstp27 0.6-3
mime 0.12
minfi 1.43.1
miniUI 0.1.1.1
modelr 0.1.9
multtest 2.46.0
munsell 0.5.0
nleqslv 3.3.4
nlme 3.1-159
nnet 7.3-18
nor1mix 1.3-0
openssl 2.0.6
openxlsx 4.2.5.2
org.Hs.eg.db 3.12.0
org.testing.db 0.1
pander 0.6.5
parallel 4.0.5
pillar 1.8.1
pixmap 0.4-12
pkgbuild 1.4.0
pkgconfig 2.0.3
pkgdown 2.0.7
pkgload 1.3.2
plogr 0.2.0
plotly 4.10.0
plyr 1.8.8
praise 1.0.0
preprocessCore 1.52.1
prettyunits 1.1.1
processx 3.7.0
profvis 0.3.7
progress 1.2.2
promises 1.2.0.1
proxy 0.4-27
ps 1.7.2
purrr 1.0.1
quadprog 1.5-8
ragg 1.2.5
randomForest 4.6-14
rappdirs 0.3.3
rcmdcheck 1.4.0
readr 2.1.4
readxl 1.4.1
rematch2 2.1.2
rematch 1.0.1
remotes 2.4.2
reprex 2.0.2
reshape2 1.4.4
reshape 0.8.9
rhdf5 2.34.0
rhdf5filters 1.2.1
rlang 1.0.6
rmarkdown 2.16
rngtools 1.5.2
roxygen2 7.2.3
rpart 4.1.16
rprojroot 2.0.3
rstudioapi 0.14
rtracklayer 1.50.0
rversions 2.1.2
rvest 1.0.3
sass 0.4.2
scales 1.2.1
scrime 1.3.5
selectr 0.4-2
sessioninfo 1.2.2
shape 1.4.6
shiny 1.7.4
siggenes 1.64.0
sitmo 2.0.2
snow 0.4-4
sourcetools 0.1.7-1
sp 1.6-0
sparseMatrixStats 1.2.1
spatial 7.3-15
splines 4.0.5
stats4 4.0.5
stats 4.0.5
stringi 1.7.12
stringr 1.5.0
survival 3.4-0
svglite 2.1.0
sys 3.4.1
systemfonts 1.0.4
tcltk 4.0.5
testRcppAttributePackage 1.0
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
testthat 3.1.7
textshaping 0.3.6
tibble 3.2.0
tidyr 1.3.0
tidyselect 1.2.0
tidyverse 1.3.2
tinytex 0.42
tools 4.0.5
translations 4.0.5
tzdb 0.3.0
urlchecker 1.0.1
usethis 2.1.6
utf8 1.2.3
utils 4.0.5
uuid 1.1-0
uwot 0.1.14
vctrs 0.5.2
viridisLite 0.4.1
vroom 1.6.1
waldo 0.4.0
webshot 0.5.4
whisker 0.4.1
withr 2.5.0
xfun 0.37
xml2 1.3.3
xopen 1.0.0
xtable 1.8-4
yaml 2.3.7
zip 2.2.2
zlibbioc 1.36.0

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trust1/bethesda : light

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