skchronicles/flair : latest

Docker image for FLAIR: Full-Length Alternative Isoform analysis of RNA

Latest release: over 3 years ago - 402 downloads - 729 dependencies

JSON

Dependencies

BiocManager 1.30.20
BiocParallel 1.28.3
BiocVersion 3.14.0
Biostrings 2.62.0
DBI 1.1.3
DESeq2 1.34.0
AnnotationDbi 1.56.2
DRIMSeq 1.22.0
DelayedArray 0.20.0
GenomeInfoDb 1.30.1
GenomeInfoDbData 1.2.7
GenomicRanges 1.46.1
IRanges 2.28.0
KEGGREST 1.34.0
KernSmooth 2.23-20
MASS 7.3-55
Matrix 1.4-0
MatrixGenerics 1.6.0
R6 2.5.1
RColorBrewer 1.1-3
RCurl 1.98-1.10
RSQLite 2.3.0
Rcpp 1.0.10
RcppArmadillo 0.12.0.1.0
RcppEigen 0.3.3.9.3
RcppNumerical 0.5-0
S4Vectors 0.32.4
SummarizedExperiment 1.24.0
XML 3.99-0.13
XVector 0.34.0
annotate 1.72.0
apeglm 1.16.0
askpass 1.1
base64enc 0.1-3
base 4.1.2
bbmle 1.0.25
bdsmatrix 1.3-6
bit64 4.0.5
bit 4.0.5
bitops 1.0-7
blob 1.2.3
boot 1.3-28
brew 1.0-8
brio 1.1.3
bslib 0.4.2
cachem 1.0.7
calibrate 1.7.7
callr 3.7.3
class 7.3-20
cli 3.6.0
clipr 0.8.0
cluster 2.1.2
coda 0.19-4
codetools 0.2-18
colorspace 2.1-0
commonmark 1.8.1
compiler 4.1.2
cpp11 0.4.3
crayon 1.5.2
credentials 1.3.2
curl 5.0.0
datasets 4.1.2
desc 1.4.2
diffobj 0.3.5
digest 0.6.31
downlit 0.4.2
edgeR 3.36.0
ellipsis 0.3.2
emdbook 1.3.12
evaluate 0.20
fansi 1.0.4
farver 2.1.1
fastmap 1.1.1
fontawesome 0.5.0
foreign 0.8-82
formatR 1.14
fs 1.6.1
futile.logger 1.4.3
futile.options 1.0.1
genefilter 1.76.0
geneplotter 1.72.0
gert 1.9.2
ggplot2 3.4.1
gh 1.4.0
gitcreds 0.1.2
glue 1.6.2
grDevices 4.1.2
graphics 4.1.2
grid 4.1.2
gtable 0.3.1
highr 0.10
htmltools 0.5.4
htmlwidgets 1.6.1
httpuv 1.6.9
httr2 0.2.2
httr 1.4.5
ini 0.3.1
isoband 0.2.7
jquerylib 0.1.4
jsonlite 1.8.4
knitr 1.42
labeling 0.4.2
lambda.r 1.2.4
later 1.3.0
lattice 0.20-45
lazyeval 0.2.2
lifecycle 1.0.3
limma 3.50.3
locfit 1.5-9.7
magrittr 2.0.3
matrixStats 0.63.0
memoise 2.0.1
methods 4.1.2
mgcv 1.8-39
mime 0.12
miniUI 0.1.1.1
munsell 0.5.0
mvtnorm 1.1-3
mvtnormAPI 1.0-0
nlme 3.1-155
nnet 7.3-17
numDeriv 2016.8-1.1
openssl 2.0.5
org.testing.db 0.1
parallel 4.1.2
pillar 1.8.1
pkgbuild 1.4.0
pkgconfig 2.0.3
pkgload 1.3.2
plogr 0.2.0
plyr 1.8.8
png 0.1-8
praise 1.0.0
prettyunits 1.1.1
processx 3.8.0
profvis 0.3.7
promises 1.2.0.1
ps 1.7.2
purrr 1.0.1
qqman 0.1.8
rappdirs 0.3.3
rcmdcheck 1.4.0
rematch2 2.1.2
remotes 2.4.2
reshape2 1.4.4
rlang 1.0.6
rmarkdown 2.20
roxygen2 7.2.3
rpart 4.1.16
rprojroot 2.0.3
rstudioapi 0.14
rversions 2.1.2
sass 0.4.5
scales 1.2.1
sessioninfo 1.2.2
shiny 1.7.4
snow 0.4-4
sourcetools 0.1.7-1
spatial 7.3-15
splines 4.1.2
stageR 1.16.0
stats4 4.1.2
stats 4.1.2
stringi 1.7.12
stringr 1.5.0
survival 3.2-13
sys 3.4.1
tcltk 4.1.2
testRcppAttributePackage 1.0
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
testthat 3.1.6
tibble 3.2.0
tinytex 0.44
tools 4.1.2
translations 4.1.2
urlchecker 1.0.1
usethis 2.1.6
utf8 1.2.3
utils 4.1.2
vctrs 0.5.2
viridisLite 0.4.1
waldo 0.4.0
whisker 0.4.1
withr 2.5.0
xfun 0.37
xml2 1.3.3
xopen 1.0.0
xtable 1.8-4
yaml 2.3.7
zip 2.2.2
zlibbioc 1.40.0
BH 1.81.0-1
Biobase 2.54.0
@PKGNAME@ @VERSION@
BiocGenerics 0.40.0

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ubuntu/libsqlite3-0 3.37.2-2ubuntu0.1
ubuntu/libss2 1.46.5-2ubuntu1.1
ubuntu/libssh-4 0.9.6-2build1
ubuntu/libssl-dev 3.0.2-0ubuntu1.8
ubuntu/libssl3 3.0.2-0ubuntu1.8
ubuntu/libstaden-read14 1.14.14 dfsg-1
ubuntu/libstdc -11-dev 11.3.0-1ubuntu1~22.04
ubuntu/libstdc 6 12.1.0-2ubuntu1~22.04
ubuntu/libsystemd0 249.11-0ubuntu3.7
ubuntu/libtasn1-6 4.18.0-4build1
ubuntu/libtbb2 2020.3-1ubuntu3
ubuntu/libtbbmalloc2 2021.5.0-7ubuntu2
ubuntu/libtcl8.6 8.6.12 dfsg-1build1
ubuntu/libtext-iconv-perl 1.7-7build3
ubuntu/libthai-data 0.1.29-1build1
ubuntu/libthai0 0.1.29-1build1
ubuntu/libtie-ixhash-perl 1.23-2.1
ubuntu/libtiff5 4.3.0-6ubuntu0.4
ubuntu/libtimedate-perl 2.3300-2
ubuntu/libtinfo6 6.3-2
ubuntu/libtirpc-common 1.3.2-2ubuntu0.1
ubuntu/libtirpc-dev 1.3.2-2ubuntu0.1
ubuntu/libtirpc3 1.3.2-2ubuntu0.1
ubuntu/libtk8.6 8.6.12-1build1
ubuntu/libtry-tiny-perl 0.31-1
ubuntu/libtsan0 11.3.0-1ubuntu1~22.04
ubuntu/libubsan1 12.1.0-2ubuntu1~22.04
ubuntu/libudev1 249.11-0ubuntu3.7
ubuntu/libunistring2 1.0-1
ubuntu/libunwind8 1.3.2-2build2
ubuntu/liburi-perl 5.10-1
ubuntu/libuuid1 2.37.2-4ubuntu3
ubuntu/libuv1 1.43.0-1
ubuntu/libvte-2.91-0 0.68.0-1
ubuntu/libvte-2.91-common 0.68.0-1
ubuntu/libvted-3-0 3.10.0-1ubuntu1
ubuntu/libwayland-client0 1.20.0-1ubuntu0.1
ubuntu/libwayland-cursor0 1.20.0-1ubuntu0.1
ubuntu/libwayland-egl1 1.20.0-1ubuntu0.1
ubuntu/libwebp7 1.2.2-2
ubuntu/libwww-perl 6.61-1
ubuntu/libwww-robotrules-perl 6.02-1
ubuntu/libx11-6 2:1.7.5-1
ubuntu/libx11-data 2:1.7.5-1
ubuntu/libx11-protocol-perl 0.56-7.1
ubuntu/libx11-xcb1 2:1.7.5-1
ubuntu/libxau6 1:1.0.9-1build5
ubuntu/libxaw7 2:1.0.14-1
ubuntu/libxcb-dri2-0 1.14-3ubuntu3
ubuntu/libxcb-dri3-0 1.14-3ubuntu3
ubuntu/libxcb-glx0 1.14-3ubuntu3
ubuntu/libxcb-present0 1.14-3ubuntu3
ubuntu/libxcb-render0 1.14-3ubuntu3
ubuntu/libxcb-shape0 1.14-3ubuntu3
ubuntu/libxcb-shm0 1.14-3ubuntu3
ubuntu/libxcb-sync1 1.14-3ubuntu3
ubuntu/libxcb-xfixes0 1.14-3ubuntu3
ubuntu/libxcb1 1.14-3ubuntu3
ubuntu/libxcomposite1 1:0.4.5-1build2
ubuntu/libxcursor1 1:1.2.0-2build4
ubuntu/libxdamage1 1:1.1.5-2build2
ubuntu/libxdmcp6 1:1.1.3-0ubuntu5
ubuntu/libxext6 2:1.3.4-1build1
ubuntu/libxfixes3 1:6.0.0-1
ubuntu/libxft2 2.3.4-1
ubuntu/libxi6 2:1.8-1build1
ubuntu/libxinerama1 2:1.1.4-3
ubuntu/libxkbcommon0 1.4.0-1
ubuntu/libxkbfile1 1:1.1.0-1build3
ubuntu/libxml-parser-perl 2.46-3build1
ubuntu/libxml-twig-perl 1:3.52-1
ubuntu/libxml-xpathengine-perl 0.14-1
ubuntu/libxml2-dev 2.9.13 dfsg-1ubuntu0.2
ubuntu/libxml2 2.9.13 dfsg-1ubuntu0.2
ubuntu/libxmu6 2:1.1.3-3
ubuntu/libxmuu1 2:1.1.3-3
ubuntu/libxpm4 1:3.5.12-1ubuntu0.22.04.1
ubuntu/libxrandr2 2:1.5.2-1build1
ubuntu/libxrender1 1:0.9.10-1build4
ubuntu/libxshmfence1 1.3-1build4
ubuntu/libxss1 1:1.2.3-1build2
ubuntu/libxt6 1:1.2.1-1
ubuntu/libxtst6 2:1.2.3-1build4
ubuntu/libxv1 2:1.0.11-1build2
ubuntu/libxxf86dga1 2:1.1.5-0ubuntu3
ubuntu/libxxf86vm1 1:1.1.4-1build3
ubuntu/libxxhash0 0.8.1-1
ubuntu/libzstd1 1.4.8 dfsg-3build1
ubuntu/linux-libc-dev 5.15.0-67.74
ubuntu/locales 2.35-0ubuntu3.1
ubuntu/login 1:4.8.1-2ubuntu2.1
ubuntu/logsave 1.46.5-2ubuntu1.1
ubuntu/lsb-base 11.1.0ubuntu4
ubuntu/lto-disabled-list 24
ubuntu/make 4.3-4.1build1
ubuntu/manpages-dev 5.10-1ubuntu1
ubuntu/manpages 5.10-1ubuntu1
ubuntu/mawk 1.3.4.20200120-3
ubuntu/media-types 7.0.0
ubuntu/minimap2 2.24 dfsg-2
ubuntu/mount 2.37.2-4ubuntu3
ubuntu/ncurses-base 6.3-2
ubuntu/ncurses-bin 6.3-2
ubuntu/netbase 6.3
ubuntu/networkd-dispatcher 2.1-2ubuntu0.22.04.2
ubuntu/openssh-client 1:8.9p1-3ubuntu0.1
ubuntu/openssl 3.0.2-0ubuntu1.8
ubuntu/passwd 1:4.8.1-2ubuntu2.1
ubuntu/patch 2.7.6-7build2
ubuntu/perl-base 5.34.0-3ubuntu1.1
ubuntu/perl-modules-5.34 5.34.0-3ubuntu1.1
ubuntu/perl-openssl-defaults 5build2
ubuntu/perl 5.34.0-3ubuntu1.1
ubuntu/pinentry-curses 1.1.1-1build2
ubuntu/pkg-config 0.29.2-1ubuntu3
ubuntu/procps 2:3.3.17-6ubuntu2
ubuntu/publicsuffix 20211207.1025-1
ubuntu/python3-dbus 1.2.18-3build1
ubuntu/python3-dev 3.10.6-1~22.04
ubuntu/python3-distutils 3.10.6-1~22.04
ubuntu/python3-gi 3.42.1-0ubuntu1
ubuntu/python3-lib2to3 3.10.6-1~22.04
ubuntu/python3-minimal 3.10.6-1~22.04
ubuntu/python3-pip 22.0.2 dfsg-1ubuntu0.2
ubuntu/python3-pkg-resources 59.6.0-1.2ubuntu0.22.04.1
ubuntu/python3-setuptools 59.6.0-1.2ubuntu0.22.04.1
ubuntu/python3-wheel 0.37.1-2ubuntu0.22.04.1
ubuntu/python3.10-dev 3.10.6-1~22.04.2
ubuntu/python3.10-minimal 3.10.6-1~22.04.2
ubuntu/python3.10 3.10.6-1~22.04.2
ubuntu/python3 3.10.6-1~22.04
ubuntu/r-base-core 4.1.2-1ubuntu2
ubuntu/r-base-dev 4.1.2-1ubuntu2
ubuntu/r-base-html 4.1.2-1ubuntu2
ubuntu/r-base 4.1.2-1ubuntu2
ubuntu/r-cran-boot 1.3-28-2
ubuntu/r-cran-class 7.3-20-1
ubuntu/r-cran-cluster 2.1.2-2
ubuntu/r-cran-codetools 0.2-18-1
ubuntu/r-cran-foreign 0.8.82-1
ubuntu/r-cran-kernsmooth 2.23-20-1
ubuntu/r-cran-lattice 0.20-45-1
ubuntu/r-cran-mass 7.3-55-1
ubuntu/r-cran-matrix 1.4-0-1
ubuntu/r-cran-mgcv 1.8-39-1
ubuntu/r-cran-nlme 3.1.155-1
ubuntu/r-cran-nnet 7.3-17-1
ubuntu/r-cran-rpart 4.1.16-1
ubuntu/r-cran-spatial 7.3-15-1
ubuntu/r-cran-survival 3.2-13-1
ubuntu/r-doc-html 4.1.2-1ubuntu2
ubuntu/r-recommended 4.1.2-1ubuntu2
ubuntu/readline-common 8.1.2-1
ubuntu/rpcsvc-proto 1.4.2-0ubuntu6
ubuntu/salmon 1.4.0 ds1-1build1
ubuntu/samtools 1.13-4
ubuntu/sed 4.8-1ubuntu2
ubuntu/sensible-utils 0.0.17
ubuntu/session-migration 0.3.6
ubuntu/shared-mime-info 2.1-2
ubuntu/sphinx-rtd-theme-common 1.0.0 dfsg-1
ubuntu/systemd-sysv 249.11-0ubuntu3.7
ubuntu/systemd-timesyncd 249.11-0ubuntu3.7
ubuntu/systemd 249.11-0ubuntu3.7
ubuntu/sysvinit-utils 3.01-1ubuntu1
ubuntu/tar 1.34 dfsg-1ubuntu0.1.22.04.1
ubuntu/tilix-common 1.9.4-2build1
ubuntu/tilix 1.9.4-2build1
ubuntu/tzdata 2022g-0ubuntu0.22.04.1
ubuntu/ubuntu-keyring 2021.03.26
ubuntu/ubuntu-mono 20.10-0ubuntu2
ubuntu/ucf 3.0043
ubuntu/unzip 6.0-26ubuntu3.1
ubuntu/usrmerge 25ubuntu2
ubuntu/util-linux 2.37.2-4ubuntu3
ubuntu/wget 1.21.2-2ubuntu1
ubuntu/x11-common 1:7.7 23ubuntu2
ubuntu/x11-utils 7.7 5build2
ubuntu/x11-xserver-utils 7.7 9build1
ubuntu/xauth 1:1.1-1build2
ubuntu/xdg-user-dirs 0.17-2ubuntu4
ubuntu/xdg-utils 1.1.3-4.1ubuntu3~22.04.1
ubuntu/xkb-data 2.33-1
ubuntu/xz-utils 5.2.5-2ubuntu1
ubuntu/zip 3.0-12build2
ubuntu/zlib1g-dev 1:1.2.11.dfsg-2ubuntu9.2
ubuntu/zlib1g 1:1.2.11.dfsg-2ubuntu9.2

bash 5.1.16

bootstrap-accessibility-plugin 1.0.6
bootstrap-colorpicker 3.4.0
bootstrap-sass 3.4.1
bootstrap 4.6.0
bootstrap 5.2.2
bootswatch 3.4.1
bootswatch 4.6.0
bootswatch 5.2.2
font-awesome 4.7.0

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