shl198/rna_ppl : latest

Latest release: over 3 years ago - 34 downloads - 2,099 dependencies

Dependencies

@PKGNAME@ @PKGVERSION@
@PKGNAME@ @VERSION@
AnVIL 1.8.3
AnnotationDbi 1.58.0
AnnotationHub 3.4.0
BH 1.78.0-0
Biobase 2.56.0
BiocFileCache 2.4.0
BiocGenerics 0.42.0
BiocIO 1.6.0
BiocManager 1.30.18
BiocParallel 1.30.3
BiocSingular 1.12.0
BiocVersion 3.15.2
Biostrings 2.64.0
DBI 1.1.3
DESeq2 1.36.0
DO.db 2.9
DOSE 3.22.0
DT 0.23
DelayedArray 0.22.0
DelayedMatrixStats 1.18.0
EDASeq 2.30.0
EnhancedVolcano 1.14.0
ExperimentHub 2.4.0
FNN 1.1.3.1
GO.db 3.15.0
GOSemSim 2.22.0
GOfuncR 1.16.0
GSEABase 1.58.0
GenomeInfoDb 1.32.2
GenomeInfoDbData 1.2.8
GenomicAlignments 1.32.0
GenomicFeatures 1.48.3
GenomicRanges 1.48.0
IRanges 2.30.0
KEGGREST 1.36.2
KernSmooth 2.23-20
MASS 7.3-55
MASS 7.3-57
Matrix 1.4-0
MatrixGenerics 1.8.1
PCAtools 2.8.0
R.methodsS3 1.8.2
R.oo 1.25.0
R.utils 2.11.0
R6 2.5.1
RANN 2.6.1
RColorBrewer 1.1-3
RCurl 1.98-1.7
ROCR 1.0-11
RSQLite 2.2.14
RSpectra 0.16-1
RUVSeq 1.30.0
Rcpp 1.0.8.3
RcppAnnoy 0.0.19
RcppArmadillo 0.11.2.0.0
RcppEigen 0.3.3.9.2
RcppNumerical 0.4-0
RcppProgress 0.4.2
RcppProgressArmadillo 0.2
RcppProgressETA 0.1
RcppProgressExample 0.2
RcppTOML 0.1.7
Rhtslib 1.28.0
Rsamtools 2.12.0
Rtsne 0.16
S4Vectors 0.34.0
ScaledMatrix 1.4.0
Seurat 4.1.1
SeuratObject 4.1.0
ShortRead 1.54.0
SummarizedExperiment 1.26.1
XML 3.99-0.10
XVector 0.36.0
abind 1.4-5
annotate 1.74.0
ape 5.6-2
apeglm 1.18.0
aplot 0.1.6
aroma.light 3.26.0
askpass 1.1
assertthat 0.2.1
babelgene 22.3
base64enc 0.1-3
base 4.2.0
bbmle 1.0.25
bdsmatrix 1.3-6
beachmat 2.12.0
beachtest 1.0.0
biomaRt 2.52.0
bit64 4.0.5
bit 4.0.4
bitops 1.0-7
blob 1.2.3
boot 1.3-28
brew 1.0-7
brio 1.1.3
bslib 0.3.1
caTools 1.18.2
cachem 1.0.6
callr 3.7.0
cellranger 1.1.0
class 7.3-20
cli 3.3.0
clipr 0.8.0
cluster 2.1.2
clusterProfiler 4.4.4
coda 0.19-4
codetools 0.2-18
colorspace 2.0-3
commonmark 1.8.0
compiler 4.2.0
cowplot 1.1.1
cpp11 0.4.2
crayon 1.5.1
credentials 1.3.2
crosstalk 1.2.0
curl 4.3.2
data.table 1.14.2
datasets 4.2.0
dbplyr 2.2.1
deldir 1.0-6
desc 1.4.1
devtools 2.4.3
diffobj 0.3.5
digest 0.6.29
docopt 0.7.1
downloader 0.4
dplyr 1.0.9
dqrng 0.3.0
edgeR 3.38.1
ellipsis 0.3.2
emdbook 1.3.12
enrichplot 1.16.1
evaluate 0.15
fansi 1.0.3
farver 2.1.0
fastmap 1.1.0
fastmatch 1.1-3
fgsea 1.22.0
filelock 1.0.2
fitdistrplus 1.1-8
fontawesome 0.2.2
forcats 0.5.1
foreign 0.8-82
formatR 1.12
fs 1.5.2
futile.logger 1.4.3
futile.options 1.0.1
future.apply 1.9.0
future 1.26.1
gage 2.46.0
gageData 2.34.0
genefilter 1.78.0
geneplotter 1.74.0
generics 0.1.2
gert 1.6.0
ggforce 0.3.3
ggfun 0.0.6
ggnewscale 0.4.7
ggplot2 3.3.6
ggplotify 0.1.0
ggraph 2.0.5
ggrepel 0.9.1
ggridges 0.5.3
ggtree 3.4.0
ggupset 0.3.0
gh 1.3.0
gitcreds 0.1.1
glmpca 0.2.0
globals 0.15.1
glue 1.6.2
goftest 1.2-3
gplots 3.1.3
grDevices 4.2.0
graph 1.74.0
graphics 4.2.0
graphlayouts 0.8.0
grid 4.2.0
gridExtra 2.3
gridGraphics 0.5-1
gtable 0.3.0
gtools 3.9.2.2
hdf5r 1.3.5
here 1.0.1
highr 0.9
hms 1.1.1
htmltools 0.5.2
htmlwidgets 1.5.4
httpuv 1.6.5
httr 1.4.3
hwriter 1.3.2.1
ica 1.0-2
igraph 1.3.2
ini 0.3.1
interactiveDisplayBase 1.34.0
irlba 2.3.5
isoband 0.2.5
jpeg 0.1-9
jquerylib 0.1.4
jsonlite 1.8.0
knitr 1.39
labeling 0.4.2
lambda.r 1.2.4
later 1.3.0
lattice 0.20-45
latticeExtra 0.6-29
lazyeval 0.2.2
leiden 0.4.2
lifecycle 1.0.1
limma 3.52.2
listenv 0.8.0
littler 0.3.15
lmtest 0.9-40
locfit 1.5-9.5
magrittr 2.0.3
mapplots 1.5.1
matrixStats 0.62.0
memoise 2.0.1
methods 4.2.0
mgcv 1.8-39
mime 0.12
miniUI 0.1.1.1
mixsqp 0.3-43
morebeach 1.0.0
morebeachtests 1.0.0
msigdb 1.4.0
msigdbr 7.5.1
munsell 0.5.0
mvtnorm 1.1-3
mvtnormAPI 1.0-0
nlme 3.1-155
nnet 7.3-17
numDeriv 2016.8-1.1
openssl 2.0.2
org.Hs.eg.db 3.15.0
org.Mm.eg.db 3.15.0
org.Rn.eg.db 3.15.0
org.testing.db 0.1
parallel 4.2.0
parallelly 1.32.0
patchwork 1.1.1
pbapply 1.5-0
pheatmap 1.0.12
pillar 1.7.0
pkgbuild 1.3.1
pkgconfig 2.0.3
pkgload 1.2.4
plogr 0.2.0
plotly 4.10.0
plyr 1.8.7
png 0.1-7
polyclip 1.10-0
praise 1.0.0
prettyunits 1.1.1
processx 3.6.1
progress 1.2.2
progressr 0.10.1
promises 1.2.0.1
ps 1.7.1
purrr 0.3.4
qvalue 2.28.0
rapiclient 0.1.3
rappdirs 0.3.3
rcmdcheck 1.4.0
readxl 1.4.0
rematch2 2.1.2
rematch 1.0.1
remotes 2.4.2
reshape2 1.4.4
reshape 0.8.9
restfulr 0.0.15
reticulate 1.25
rgeos 0.5-9
rjson 0.2.21
rlang 1.0.2
roxygen2 7.2.0
rpart 4.1.16
rprojroot 2.0.3
rstudioapi 0.13
rsvd 1.0.5
rtracklayer 1.56.1
rversions 2.1.1
sass 0.4.1
scales 1.2.0
scattermore 0.8
scatterpie 0.1.7
sctransform 0.3.3
sessioninfo 1.2.2
shadowtext 0.1.2
shiny 1.7.1
sitmo 2.0.2
sm 2.2-5.7
snow 0.4-4
sourcetools 0.1.7
sp 1.5-0
sparseMatrixStats 1.8.0
spatial 7.3-15
spatstat.core 2.4-4
spatstat.data 2.2-0
spatstat.geom 2.4-0
spatstat.random 2.2-0
spatstat.sparse 2.1-1
spatstat.utils 2.3-1
splines 4.2.0
stats4 4.2.0
stats 4.2.0
stringi 1.7.6
stringr 1.4.0
survival 3.3-1
susieR 0.12.12
sva 3.44.0
sys 3.4
tcltk 4.2.0
tensor 1.5
testRcppAttributePackage 1.0
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
testthat 3.1.4
tibble 3.1.7
tidygraph 1.2.1
tidyr 1.2.0
tidyselect 1.1.2
tidytree 0.3.9
tools 4.2.0
translations 4.2.0
treeio 1.20.0
tweenr 1.0.2
usethis 2.1.6
utf8 1.2.2
utils 4.2.0
uwot 0.1.11
vctrs 0.4.1
vioplot 0.3.7
viridis 0.6.2
viridisLite 0.4.0
waldo 0.4.0
whisker 0.4
withr 2.5.0
xfun 0.31
xml2 1.3.3
xopen 1.0.0
xtable 1.8-4
yaml 2.3.5
yulab.utils 0.0.4
zip 2.2.0
zlibbioc 1.42.0
zoo 1.8-10

bash 5.0.17

github.com/evanw/esbuild (devel)
golang.org/x/sys v0.0.0-20200501145240-bc7a7d42d5c3
stdlib 1.16.3

mypy 0.902

ecosyste.ms

Data

Tools

Indexes

Applications

Experiments

Docker

shl198/rna_ppl : latest

Dependencies