Ecosyste.ms: Docker
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shashankti/bioc_docker : v1
Ubuntu 22.04.1 LTS
Latest release: almost 2 years ago - 11 downloads - 1,350 dependencies
JSONDependencies
- @PKGNAME@ @PKGVERSION@
- @PKGNAME@ @VERSION@
- AnnotationDbi 1.61.0
- BH 1.81.0-1
- BSgenome 1.67.3
- Biobase 2.59.0
- BiocFileCache 2.7.1
- BiocGenerics 0.45.0
- BiocIO 1.9.2
- BiocManager 1.30.19
- BiocParallel 1.33.9
- BiocVersion 3.17.1
- Biostrings 2.67.0
- DBI 1.1.3
- DESeq2 1.39.5
- DNAcopy 1.73.0
- DelayedArray 0.25.0
- DiffBind 3.9.5
- GenomeInfoDb 1.35.15
- GenomeInfoDbData 1.2.9
- GenomicAlignments 1.35.0
- GenomicRanges 1.51.4
- GreyListChIP 1.31.0
- IRanges 2.33.0
- KEGGREST 1.39.0
- KernSmooth 2.23-20
- MASS 7.3-58.2
- MEDIPS 1.51.0
- Matrix 1.5-3
- MatrixGenerics 1.11.0
- R6 2.5.1
- RColorBrewer 1.1-3
- RCurl 1.98-1.10
- RSQLite 2.2.20
- Rcpp 1.0.10
- RcppArmadillo 0.11.4.3.1
- RcppEigen 0.3.3.9.3
- RcppNumerical 0.4-0
- Rhtslib 2.1.0
- Rsamtools 2.15.1
- S4Vectors 0.37.3
- SQUAREM 2021.1
- ShortRead 1.57.1
- SummarizedExperiment 1.29.1
- XML 3.99-0.13
- XVector 0.39.0
- amap 0.8-19
- apeglm 1.21.0
- ashr 2.2-54
- askpass 1.1
- assertthat 0.2.1
- base64enc 0.1-3
- base 4.3.0
- bbmle 1.0.25
- bdsmatrix 1.3-6
- biomaRt 2.55.0
- bit64 4.0.5
- bit 4.0.5
- bitops 1.0-7
- blob 1.2.3
- boot 1.3-28.1
- brew 1.0-8
- brio 1.1.3
- bslib 0.4.2
- caTools 1.18.2
- cachem 1.0.6
- callr 3.7.3
- class 7.3-21
- clipr 0.8.0
- cluster 2.1.4
- cli 3.6.0
- coda 0.19-4
- codetools 0.2-19
- colorspace 2.1-0
- commonmark 1.8.1
- compiler 4.3.0
- cpp11 0.4.3
- crayon 1.5.2
- credentials 1.3.2
- curl 5.0.0
- datasets 4.3.0
- dbplyr 2.3.0
- deldir 1.0-6
- desc 1.4.2
- devtools 2.4.5
- diffobj 0.3.5
- digest 0.6.31
- docopt 0.7.1
- downlit 0.4.2
- dplyr 1.1.0
- edgeR 3.41.2
- ellipsis 0.3.2
- emdbook 1.3.12
- etrunct 0.1
- evaluate 0.20
- fansi 1.0.4
- farver 2.1.1
- fastmap 1.1.0
- filelock 1.0.2
- fontawesome 0.5.0
- foreign 0.8-84
- formatR 1.14
- fs 1.6.0
- futile.logger 1.4.3
- futile.options 1.0.1
- generics 0.1.3
- gert 1.9.2
- ggplot2 3.4.0
- ggrepel 0.9.3
- gh 1.3.1
- gitcreds 0.1.2
- glue 1.6.2
- gplots 3.1.3
- grDevices 4.3.0
- graphics 4.3.0
- grid 4.3.0
- gtable 0.3.1
- gtools 3.9.4
- highr 0.10
- hms 1.1.2
- htmltools 0.5.4
- htmlwidgets 1.6.1
- httpuv 1.6.8
- httr 1.4.4
- hwriter 1.3.2.1
- ini 0.3.1
- interp 1.1-3
- invgamma 1.1
- irlba 2.3.5.1
- isoband 0.2.7
- jpeg 0.1-10
- jquerylib 0.1.4
- jsonlite 1.8.4
- knitr 1.42
- labeling 0.4.2
- lambda.r 1.2.4
- later 1.3.0
- lattice 0.20-45
- latticeExtra 0.6-30
- lifecycle 1.0.3
- limma 3.55.4
- littler 0.3.17
- locfit 1.5-9.7
- magrittr 2.0.3
- matrixStats 0.63.0
- memoise 2.0.1
- methods 4.3.0
- mgcv 1.8-41
- mime 0.12
- miniUI 0.1.1.1
- mixsqp 0.3-48
- munsell 0.5.0
- mvtnorm 1.1-3
- mvtnormAPI 1.0-0
- nlme 3.1-162
- nnet 7.3-18
- numDeriv 2016.8-1.1
- openssl 2.0.5
- org.testing.db 0.1
- parallel 4.3.0
- pillar 1.8.1
- pkgbuild 1.4.0
- pkgconfig 2.0.3
- pkgdown 2.0.7
- pkgload 1.3.2
- plogr 0.2.0
- plyr 1.8.8
- png 0.1-8
- praise 1.0.0
- preprocessCore 1.61.0
- prettyunits 1.1.1
- processx 3.8.0
- profvis 0.3.7
- progress 1.2.2
- promises 1.2.0.1
- ps 1.7.2
- purrr 1.0.1
- ragg 1.2.5
- rappdirs 0.3.3
- rcmdcheck 1.4.0
- rematch2 2.1.2
- remotes 2.4.2
- restfulr 0.0.15
- rjson 0.2.21
- rlang 1.0.6
- rmarkdown 2.20
- roxygen2 7.2.3
- rpart 4.1.19
- rprojroot 2.0.3
- rstudioapi 0.14
- rtracklayer 1.59.1
- rversions 2.1.2
- sass 0.4.5
- scales 1.2.1
- sessioninfo 1.2.2
- shiny 1.7.4
- snow 0.4-4
- sourcetools 0.1.7-1
- spatial 7.3-16
- splines 4.3.0
- stats4 4.3.0
- stats 4.3.0
- stringi 1.7.12
- stringr 1.5.0
- survival 3.5-0
- sys 3.4.1
- systemPipeR 2.5.0
- systemfonts 1.0.4
- tcltk 4.3.0
- testRcppAttributePackage 1.0
- testRcppClass 0.1
- testRcppInterfaceExporter 0.1.0
- testRcppInterfaceUser 0.1.0
- testRcppModule 0.1
- testRcppPackage 0.1.0
- testthat 3.1.6
- textshaping 0.3.6
- tibble 3.1.8
- tidyselect 1.2.0
- tinytex 0.44
- tools 4.3.0
- translations 4.3.0
- truncnorm 1.0-8
- urlchecker 1.0.1
- usethis 2.1.6
- utf8 1.2.3
- utils 4.3.0
- vctrs 0.5.2
- viridisLite 0.4.1
- waldo 0.4.0
- whisker 0.4.1
- withr 2.5.0
- xfun 0.37
- xml2 1.3.3
- xopen 1.0.0
- xtable 1.8-4
- yaml 2.3.7
- zip 2.2.2
- zlibbioc 1.45.0
- ubuntu/adduser 3.118ubuntu5
- ubuntu/adwaita-icon-theme 41.0-1ubuntu1
- ubuntu/apt-utils 2.4.8
- ubuntu/apt 2.4.8
- ubuntu/autoconf 2.71-2
- ubuntu/automake 1:1.16.5-1.3
- ubuntu/autotools-dev 20220109.1
- ubuntu/base-files 12ubuntu4.2
- ubuntu/base-passwd 3.5.52build1
- ubuntu/bash-completion 1:2.11-5ubuntu1
- ubuntu/bash 5.1-6ubuntu1
- ubuntu/biber 2.17-2
- ubuntu/binutils-common 2.38-4ubuntu2.1
- ubuntu/binutils-x86-64-linux-gnu 2.38-4ubuntu2.1
- ubuntu/binutils 2.38-4ubuntu2.1
- ubuntu/bsdutils 1:2.37.2-4ubuntu3
- ubuntu/byacc 1:2.0.20220114-1
- ubuntu/bzip2 1.0.8-5build1
- ubuntu/ca-certificates-java 20190909ubuntu1.1
- ubuntu/ca-certificates 20211016ubuntu0.22.04.1
- ubuntu/cmake-data 3.22.1-1ubuntu1.22.04.1
- ubuntu/cmake 3.22.1-1ubuntu1.22.04.1
- ubuntu/comerr-dev 2.1-1.46.5-2ubuntu1.1
- ubuntu/coreutils 8.32-4.1ubuntu1
- ubuntu/cpp-11 11.3.0-1ubuntu1~22.04
- ubuntu/cpp 4:11.2.0-1ubuntu1
- ubuntu/curl 7.81.0-1ubuntu1.7
- ubuntu/dash 0.5.11 git20210903 057cd650a4ed-3build1
- ubuntu/debconf 1.5.79ubuntu1
- ubuntu/debianutils 5.5-1ubuntu2
- ubuntu/default-jdk-headless 2:1.11-72build2
- ubuntu/default-jdk 2:1.11-72build2
- ubuntu/default-jre-headless 2:1.11-72build2
- ubuntu/default-jre 2:1.11-72build2
- ubuntu/default-libmysqlclient-dev 1.0.8
- ubuntu/dh-elpa-helper 2.0.9ubuntu1
- ubuntu/diffutils 1:3.8-0ubuntu2
- ubuntu/dirmngr 2.2.27-3ubuntu2.1
- ubuntu/distro-info-data 0.52ubuntu0.2
- ubuntu/dpkg-dev 1.21.1ubuntu2.1
- ubuntu/dpkg 1.21.1ubuntu2.1
- ubuntu/e2fsprogs 1.46.5-2ubuntu1.1
- ubuntu/emacsen-common 3.0.4
- ubuntu/f2c 20200916-1
- ubuntu/file 1:5.41-3
- ubuntu/findutils 4.8.0-1ubuntu3
- ubuntu/fontconfig-config 2.13.1-4.2ubuntu5
- ubuntu/fontconfig 2.13.1-4.2ubuntu5
- ubuntu/fonts-lmodern 2.004.5-6.1
- ubuntu/fonts-texgyre 20180621-3.1
- ubuntu/fort77 1.15-11.1
- ubuntu/freeglut3 2.8.1-6
- ubuntu/g -11 11.3.0-1ubuntu1~22.04
- ubuntu/g 4:11.2.0-1ubuntu1
- ubuntu/gcc-11-base 11.3.0-1ubuntu1~22.04
- ubuntu/gcc-11 11.3.0-1ubuntu1~22.04
- ubuntu/gcc-12-base 12.1.0-2ubuntu1~22.04
- ubuntu/gcc 4:11.2.0-1ubuntu1
- ubuntu/gdal-data 3.4.1 dfsg-1build4
- ubuntu/gdb 12.1-0ubuntu1~22.04
- ubuntu/gfortran-11 11.3.0-1ubuntu1~22.04
- ubuntu/gfortran 4:11.2.0-1ubuntu1
- ubuntu/ggobi 2.1.11-2build1
- ubuntu/gir1.2-atk-1.0 2.36.0-3build1
- ubuntu/gir1.2-freedesktop 1.72.0-1
- ubuntu/gir1.2-gdkpixbuf-2.0 2.42.8 dfsg-1ubuntu0.2
- ubuntu/gir1.2-glib-2.0 1.72.0-1
- ubuntu/gir1.2-gtk-2.0 2.24.33-2ubuntu2
- ubuntu/gir1.2-harfbuzz-0.0 2.7.4-1ubuntu3.1
- ubuntu/gir1.2-pango-1.0 1.50.6 ds-2
- ubuntu/gir1.2-rsvg-2.0 2.52.5 dfsg-3
- ubuntu/git-man 1:2.34.1-1ubuntu1.6
- ubuntu/git 1:2.34.1-1ubuntu1.6
- ubuntu/gpg-agent 2.2.27-3ubuntu2.1
- ubuntu/gpgv 2.2.27-3ubuntu2.1
- ubuntu/graphviz 2.42.2-6
- ubuntu/grep 3.7-1build1
- ubuntu/gsfonts 1:8.11 urwcyr1.0.7~pre44-4.5
- ubuntu/gtk-update-icon-cache 3.24.33-1ubuntu2
- ubuntu/gzip 1.10-4ubuntu4.1
- ubuntu/hdf5-helpers 1.10.7 repack-4ubuntu2
- ubuntu/hicolor-icon-theme 0.17-2
- ubuntu/hostname 3.23ubuntu2
- ubuntu/humanity-icon-theme 0.6.16
- ubuntu/ibverbs-providers 39.0-1
- ubuntu/icu-devtools 70.1-2
- ubuntu/imagemagick-6-common 8:6.9.11.60 dfsg-1.3build2
- ubuntu/imagemagick-6.q16 8:6.9.11.60 dfsg-1.3build2
- ubuntu/imagemagick 8:6.9.11.60 dfsg-1.3build2
- ubuntu/init-system-helpers 1.62
- ubuntu/jags 4.3.0-3build1
- ubuntu/java-common 0.72build2
- ubuntu/krb5-multidev 1.19.2-2ubuntu0.1
- ubuntu/lib32gcc-s1 12.1.0-2ubuntu1~22.04
- ubuntu/lib32stdc 6 12.1.0-2ubuntu1~22.04
- ubuntu/libacl1 2.3.1-1
- ubuntu/libaec-dev 1.0.6-1
- ubuntu/libaec0 1.0.6-1
- ubuntu/libalgorithm-c3-perl 0.11-1
- ubuntu/libamd2 1:5.10.1 dfsg-4build1
- ubuntu/libann0 1.1.2 doc-7build1
- ubuntu/libaom-dev 3.3.0-1
- ubuntu/libaom3 3.3.0-1
- ubuntu/libapparmor-dev 3.0.4-2ubuntu2.1
- ubuntu/libapparmor1 3.0.4-2ubuntu2.1
- ubuntu/libapt-pkg6.0 2.4.8
- ubuntu/libarchive-dev 3.6.0-1ubuntu1
- ubuntu/libarchive-extract-perl 0.88-1
- ubuntu/libarchive13 3.6.0-1ubuntu1
- ubuntu/libarmadillo-dev 1:10.8.2 dfsg-1
- ubuntu/libarmadillo10 1:10.8.2 dfsg-1
- ubuntu/libarpack2-dev 3.8.0-1
- ubuntu/libarpack2 3.8.0-1
- ubuntu/libasan6 11.3.0-1ubuntu1~22.04
- ubuntu/libasound2-data 1.2.6.1-1ubuntu1
- ubuntu/libasound2 1.2.6.1-1ubuntu1
- ubuntu/libass9 1:0.15.2-1
- ubuntu/libasyncns0 0.8-6build2
- ubuntu/libatk1.0-0 2.36.0-3build1
- ubuntu/libatk1.0-data 2.36.0-3build1
- ubuntu/libatk1.0-dev 2.36.0-3build1
- ubuntu/libatkmm-1.6-1v5 2.28.2-1build1
- ubuntu/libatkmm-1.6-dev 2.28.2-1build1
- ubuntu/libatomic1 12.1.0-2ubuntu1~22.04
- ubuntu/libattr1 1:2.5.1-1build1
- ubuntu/libaudit-common 1:3.0.7-1build1
- ubuntu/libaudit1 1:3.0.7-1build1
- ubuntu/libautovivification-perl 0.18-1build4
- ubuntu/libavahi-client3 0.8-5ubuntu5
- ubuntu/libavahi-common-data 0.8-5ubuntu5
- ubuntu/libavahi-common3 0.8-5ubuntu5
- ubuntu/libavcodec-dev 7:4.4.2-0ubuntu0.22.04.1
- ubuntu/libavcodec58 7:4.4.2-0ubuntu0.22.04.1
- ubuntu/libavfilter-dev 7:4.4.2-0ubuntu0.22.04.1
- ubuntu/libavfilter7 7:4.4.2-0ubuntu0.22.04.1
- ubuntu/libavformat-dev 7:4.4.2-0ubuntu0.22.04.1
- ubuntu/libavformat58 7:4.4.2-0ubuntu0.22.04.1
- ubuntu/libavutil-dev 7:4.4.2-0ubuntu0.22.04.1
- ubuntu/libavutil56 7:4.4.2-0ubuntu0.22.04.1
- ubuntu/libb-hooks-endofscope-perl 0.25-1
- ubuntu/libb-hooks-op-check-perl 0.22-1build5
- ubuntu/libbabeltrace1 1.5.8-2build1
- ubuntu/libbinutils 2.38-4ubuntu2.1
- ubuntu/libblas-dev 3.10.0-2ubuntu1
- ubuntu/libblas3 3.10.0-2ubuntu1
- ubuntu/libblkid-dev 2.37.2-4ubuntu3
- ubuntu/libblkid1 2.37.2-4ubuntu3
- ubuntu/libblosc-dev 1.21.1 ds2-2
- ubuntu/libblosc1 1.21.1 ds2-2
- ubuntu/libbluray2 1:1.3.1-1
- ubuntu/libboost-dev 1.74.0.3ubuntu7
- ubuntu/libboost-iostreams1.74.0 1.74.0-14ubuntu3
- ubuntu/libboost-regex1.74.0 1.74.0-14ubuntu3
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- ubuntu/libbrotli-dev 1.0.9-2build6
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- ubuntu/libbs2b0 3.1.0 dfsg-2.2build1
- ubuntu/libbsd-dev 0.11.5-1
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- ubuntu/libbtf1 1:5.10.1 dfsg-4build1
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- ubuntu/libbusiness-isbn-data-perl 20210112.006-1
- ubuntu/libbusiness-isbn-perl 3.006-1
- ubuntu/libbusiness-ismn-perl 1.202-1
- ubuntu/libbusiness-issn-perl 1.005-1
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- ubuntu/libcairomm-1.0-1v5 1.12.2-4build3
- ubuntu/libcairomm-1.0-dev 1.12.2-4build3
- ubuntu/libcamd2 1:5.10.1 dfsg-4build1
- ubuntu/libcap-ng0 0.7.9-2.2build3
- ubuntu/libcap2 1:2.44-1build3
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- ubuntu/libcc1-0 12.1.0-2ubuntu1~22.04
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- ubuntu/libcfitsio9 4.0.0-1
- ubuntu/libcgi-pm-perl 4.54-1
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- ubuntu/libclang-common-14-dev 1:14.0.0-1ubuntu1
- ubuntu/libclang-dev 1:14.0-55~exp2
- ubuntu/libclang1-14 1:14.0.0-1ubuntu1
- ubuntu/libclass-accessor-perl 0.51-1
- ubuntu/libclass-c3-perl 0.35-1
- ubuntu/libclass-data-inheritable-perl 0.08-3
- ubuntu/libclass-inspector-perl 1.36-1
- ubuntu/libclass-method-modifiers-perl 2.13-1
- ubuntu/libclass-singleton-perl 1.6-1
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- ubuntu/libcrypt1 1:4.4.27-1
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- ubuntu/libctf0 2.38-4ubuntu2.1
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- ubuntu/libcurl3-gnutls 7.81.0-1ubuntu1.7
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- ubuntu/libcurl4 7.81.0-1ubuntu1.7
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- ubuntu/libdata-compare-perl 1.27-1
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- ubuntu/libdata-optlist-perl 0.112-1
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- ubuntu/libdate-simple-perl 3.0300-3build2
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- ubuntu/libdatetime-timezone-perl 1:2.51-1 2021e
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- ubuntu/libdrm2 2.4.113-2~ubuntu0.22.04.1
- ubuntu/libdw1 0.186-1build1
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- ubuntu/libedit2 3.1-20210910-1build1
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- ubuntu/libegl-mesa0 22.2.5-0ubuntu0.1~22.04.1
- ubuntu/libegl1 1.4.0-1
- ubuntu/libeigen3-dev 3.4.0-2ubuntu2
- ubuntu/libelf1 0.186-1build1
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- ubuntu/libencode-hanextra-perl 0.23-5build4
- ubuntu/libencode-jis2k-perl 0.03-1build7
- ubuntu/libencode-locale-perl 1.05-1.1
- ubuntu/libencode-perl 3.16-1build1
- ubuntu/liberror-perl 0.17029-1
- ubuntu/libeval-closure-perl 0.14-1
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- ubuntu/libevent-dev 2.1.12-stable-1build3
- ubuntu/libevent-extra-2.1-7 2.1.12-stable-1build3
- ubuntu/libevent-openssl-2.1-7 2.1.12-stable-1build3
- ubuntu/libevent-pthreads-2.1-7 2.1.12-stable-1build3
- ubuntu/libexception-class-perl 1.45-1
- ubuntu/libexif-dev 0.6.24-1build1
- ubuntu/libexif12 0.6.24-1build1
- ubuntu/libexpat1-dev 2.4.7-1ubuntu0.2
- ubuntu/libexpat1 2.4.7-1ubuntu0.2
- ubuntu/libexporter-tiny-perl 1.002002-1
- ubuntu/libext2fs2 1.46.5-2ubuntu1.1
- ubuntu/libf2c2-dev 20140711-1
- ubuntu/libf2c2 20140711-1
- ubuntu/libfabric1 1.11.0-3
- ubuntu/libfakeroot 1.28-1ubuntu1
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