Ecosyste.ms: Docker

An open API service providing dependency metadata for docker images.

prangannath/rna_seq : latest

Container for EvolOMICS RNA_Seq pipeline

Latest release: almost 2 years ago - 26 downloads - 1,382 dependencies

Dependencies

@PKGNAME@ @VERSION@
AnnotationDbi 1.56.2
BBmisc 1.11
BH 1.74.0-1
BatchJobs 1.8
Biobase 2.54.0
BiocGenerics 0.40.0
BiocManager 1.30.16
BiocParallel 1.28.3
BiocVersion 3.14.0
Biostrings 2.62.0
CVST 0.2-2
DBI 1.1.2
DBItest 1.7.2
DESeq2 1.34.0
DEoptimR 1.0-10
DRR 0.0.4
DT 0.17
DelayedArray 0.20.0
FNN 1.1.3
Formula 1.2-4
GenomeInfoDb 1.30.1
GenomeInfoDbData 1.2.7
GenomicRanges 1.46.1
Hmisc 4.6-0
IRanges 2.28.0
KEGGREST 1.34.0
KernSmooth 2.23-20
MASS 7.3-55
MLmetrics 1.1.1
Matrix 1.4-0
MatrixGenerics 1.6.0
MatrixModels 0.5-0
ModelMetrics 1.2.2.2
R6 2.5.1
RANN 2.6.1
RColorBrewer 1.1-2
RCurl 1.98-1.6
RMySQL 0.10.23
ROCR 1.0-11
RPostgreSQL 0.7-3
RSQLite 2.2.9
RSpectra 0.16-0
RUnit 0.4.32
Rcpp 1.0.8
RcppArmadillo 0.10.8.1.0
RcppEigen 0.3.3.9.1
RcppNumerical 0.4-0
RcppProgress 0.4.2
RcppProgressArmadillo 0.2
RcppProgressETA 0.1
RcppProgressExample 0.2
RcppRoll 0.3.0
Rhtslib 1.26.0
Rmpi 0.6-9.2
Rsamtools 2.10.0
S4Vectors 0.32.3
SQUAREM 2021.1
SparseM 1.81
SummarizedExperiment 1.24.0
TH.data 1.1-0
TTR 0.24.3
TeachingDemos 2.12
XML 3.99-0.9
XVector 0.34.0
abind 1.4-5
acepack 1.4.1
affy 1.72.0
affyio 1.64.0
annotate 1.72.0
apeglm 1.16.0
ashr 2.2-54
askpass 1.1
assertthat 0.2.1
backports 1.4.1
base64enc 0.1-3
base64url 1.4
base 4.1.2
batchtools 0.9.15
bbmle 1.0.25
bdsmatrix 1.3-6
bench 1.1.2
bit64 4.0.5
bit 4.0.4
bitops 1.0-7
blob 1.2.2
boot 1.3-28
brew 1.0-7
brio 1.1.3
broom 0.7.12
caTools 1.18.2
cachem 1.0.6
callr 3.7.0
caret 6.0-90
cba 0.2-21
checkmate 2.0.0
chron 2.3-56
class 7.3-20
classInt 0.4-3
cli 3.2.0
cliapp 0.1.1
clipr 0.8.0
cluster 2.1.2
coda 0.19-4
codetools 0.2-18
colorspace 2.0-2
commonmark 1.7
compiler 4.1.2
conquer 1.2.2
covr 3.5.1
cpp11 0.4.2
crayon 1.5.0
crosstalk 1.2.0
curl 4.3.2
data.table 1.14.2
datasets 4.1.2
dbplyr 2.1.1
ddalpha 1.3.11
decor 1.0.1
deldir 1.0-6
desc 1.4.0
diffobj 0.3.5
digest 0.6.29
dimRed 0.2.4
doMC 1.3.8
doParallel 1.0.17
dplyr 1.0.8
dygraphs 1.1.1.6
e1071 1.7-9
earth 5.3.1
ellipsis 0.3.2
emdbook 1.3.12
etrunct 0.1
evaluate 0.15
fansi 1.0.2
farver 2.1.0
fastICA 1.2-3
fastmap 1.1.0
fastmatch 1.1-3
filehash 2.4-2
fontBitstreamVera 0.1.1
fontLiberation 0.1.0
fontquiver 0.2.1
foreach 1.5.2
foreign 0.8-82
formatR 1.11
fs 1.5.2
fts 0.9.9.2
furrr 0.2.3
futile.logger 1.4.3
futile.options 1.0.1
future.apply 1.8.1
future 1.24.0
gdata 2.18.0
genefilter 1.76.0
geneplotter 1.72.0
generics 0.1.2
geometry 0.4.5
geosphere 1.5-14
ggplot2 3.3.5
gh 1.3.0
gitcreds 0.1.1
globals 0.14.0
glue 1.6.1
goftest 1.2-3
gower 1.0.0
gplots 3.1.1
grDevices 4.1.2
graphics 4.1.2
grid 4.1.2
gridExtra 2.3
gtable 0.3.0
gtools 3.9.2
hexbin 1.28.2
highr 0.9
hms 1.1.1
htmlTable 2.4.0
htmltools 0.5.2
htmlwidgets 1.5.4
httpuv 1.6.5
httr 1.4.2
igraph 1.2.11
ini 0.3.1
interp 1.0-33
invgamma 1.1
ipred 0.9-12
irlba 2.3.5.1
isoband 0.2.5
iterators 1.0.14
jpeg 0.1-9
jsonlite 1.7.3
kernlab 0.9-29
knitr 1.37
ks 1.13.3
labeling 0.4.2
lambda.r 1.2.4
later 1.3.0
lattice 0.20-45
latticeExtra 0.6-29
lava 1.6.10
lazyeval 0.2.2
lifecycle 1.0.1
limma 3.50.3
linkXTS 1.0
linprog 0.9-2
listenv 0.8.0
littler 0.3.15
lme4 1.1-28
lobstr 1.1.1
locfit 1.5-9.4
logcondens 2.1.6
lpSolve 5.6.15
lubridate 1.8.0
lwgeom 0.2-8
magic 1.6-0
magrittr 2.0.2
mapproj 1.2.8
maps 3.4.0
maptools 1.1-2
markdown 1.1
matrixStats 0.61.0
mclust 5.4.9
mda 0.5-2
memoise 2.0.1
methods 4.1.2
mets 1.2.9
mgcv 1.8-39
mime 0.12
minqa 1.2.4
misc3d 0.9-1
mixsqp 0.3-48
mlbench 2.1-3
mockery 0.4.3
mockr 0.1
modeldata 0.1.1
multcomp 1.4-18
multicool 0.1-12
munsell 0.5.0
mvtnorm 1.1-3
mvtnormAPI 1.0-0
nlme 3.1-155
nloptr 2.0.0
nnet 7.3-17
numDeriv 2016.8-1.1
openssl 1.4.6
org.testing.db 0.1
pROC 1.18.0
palmerpenguins 0.1.0
parallel 4.1.2
parallelly 1.30.0
pillar 1.7.0
pkgKitten 0.2.2
pkgbuild 1.3.1
pkgconfig 2.0.3
pkgload 1.2.4
plogr 0.2.0
plot3D 1.4
plotmo 3.6.1
plotrix 3.8-2
pls 2.8-0
plyr 1.8.6
png 0.1-7
polyclip 1.10-0
pracma 2.3.6
praise 1.0.0
preprocessCore 1.56.0
prettycode 1.1.0
prettyunits 1.1.1
processx 3.5.2
prodlim 2019.11.13
profmem 0.6.0
progress 1.2.2
progressr 0.10.0
promises 1.2.0.1
proxy 0.4-26
ps 1.6.0
purrr 0.3.4
quadprog 1.5-8
quantmod 0.4.18
quantreg 5.88
ragg 1.2.1
ranger 0.13.1
rappdirs 0.3.3
raster 3.5-15
readr 2.1.2
recipes 0.1.17
rematch2 2.1.2
reshape2 1.4.4
rex 1.2.1
rgdal 1.5-28
rgl 0.108.3
rlang 1.0.1
rmarkdown 2.6
robustbase 0.93-9
rpart 4.1.16
rprojroot 2.0.2
rsample 0.1.1
rstudioapi 0.13
s2 1.0.7
sandwich 3.0-1
sass 0.4.0
scales 1.1.1
selectr 0.4-2
sendmailR 1.2-1
setRNG 2013.9-1
sf 1.0-6
sfsmisc 1.1-12
shiny 1.5.0
slider 0.2.2
snow 0.4-4
sodium 1.2.0
sourcetools 0.1.7
sp 1.4-6
spatial 7.3-15
spatstat.core 2.3-2
spatstat.data 2.1-2
spatstat.geom 2.3-2
spatstat.linnet 2.3-1
spatstat.sparse 2.1-0
spatstat.utils 2.3-0
spatstat 2.3-0
splines 4.1.2
statmod 1.4.36
stats4 4.1.2
stats 4.1.2
stringi 1.7.6
stringr 1.4.0
survival 3.2-13
svglite 2.1.0
sys 3.4
systemfonts 1.0.4
tcltk 4.1.2
tensor 1.5
terra 1.5-21
testRcppAttributePackage 1.0
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
testit 0.13
testthat 3.1.2
textshaping 0.3.6
tibble 3.1.6
tidyr 1.2.0
tidyselect 1.1.2
tikzDevice 0.12.3.1
timeDate 3043.102
timeSeries 3062.100
timereg 2.0.1
tinytex 0.37
tools 4.1.2
translations 4.1.2
truncnorm 1.0-8
tseries 0.10-49
tximport 1.22.0
tzdb 0.2.0
units 0.8-0
utf8 1.2.2
utils 4.1.2
vctrs 0.3.8
vdiffr 1.0.2
viridis 0.6.2
viridisLite 0.4.0
vroom 1.5.7
vsn 3.62.0
waldo 0.3.1
warp 0.2.0
webutils 1.1
withr 2.4.3
wk 0.6.0
wkutils 0.1.1
xfun 0.29
xml2 1.3.3
xtable 1.8-4
xts 0.12.1
yaml 2.3.5
zlibbioc 1.40.0
zoo 1.8-9

bash 5.1.16