nfcore/methylseq : dev
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel.
Latest release: over 4 years ago - 95,358 downloads - 297 dependencies
JSONDependencies
- @PKGNAME@ @VERSION@
- BH 1.75.0-0
- Biobase 2.52.0
- BiocGenerics 0.38.0
- BiocIO 1.2.0
- BiocParallel 1.26.0
- Biostrings 2.60.0
- DelayedArray 0.18.0
- GenomeInfoDb 1.28.0
- GenomeInfoDbData 1.2.6
- GenomicAlignments 1.28.0
- GenomicRanges 1.44.0
- IRanges 2.26.0
- Matrix 1.3-4
- MatrixGenerics 1.4.0
- NOISeq 2.36.0
- RCurl 1.98-1.3
- Rhtslib 1.24.0
- Rsamtools 2.8.0
- S4Vectors 0.30.0
- SummarizedExperiment 1.22.0
- XML 3.99-0.6
- XVector 0.32.0
- base 4.1.0
- bitops 1.0-7
- compiler 4.1.0
- crayon 1.4.1
- datasets 4.1.0
- formatR 1.11
- futile.logger 1.4.3
- futile.options 1.0.1
- getopt 1.20.3
- grDevices 4.1.0
- graphics 4.1.0
- grid 4.1.0
- lambda.r 1.2.4
- lattice 0.20-44
- matrixStats 0.59.0
- methods 4.1.0
- optparse 1.6.6
- parallel 4.1.0
- restfulr 0.0.13
- rjson 0.2.20
- rtracklayer 1.52.0
- snow 0.4-3
- splines 4.1.0
- stats4 4.1.0
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- tcltk 4.1.0
- tools 4.1.0
- translations 4.1.0
- utils 4.1.0
- yaml 2.2.1
- zlibbioc 1.38.0
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