Ecosyste.ms: Docker
An open API service providing dependency metadata for docker images.
nfcore/methylseq : dev
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel.
Latest release: over 3 years ago - 95,118 downloads - 297 dependencies
JSONDependencies
- @PKGNAME@ @VERSION@
- BH 1.75.0-0
- Biobase 2.52.0
- BiocGenerics 0.38.0
- BiocIO 1.2.0
- BiocParallel 1.26.0
- Biostrings 2.60.0
- DelayedArray 0.18.0
- GenomeInfoDb 1.28.0
- GenomeInfoDbData 1.2.6
- GenomicAlignments 1.28.0
- GenomicRanges 1.44.0
- IRanges 2.26.0
- Matrix 1.3-4
- MatrixGenerics 1.4.0
- NOISeq 2.36.0
- RCurl 1.98-1.3
- Rhtslib 1.24.0
- Rsamtools 2.8.0
- S4Vectors 0.30.0
- SummarizedExperiment 1.22.0
- XML 3.99-0.6
- XVector 0.32.0
- base 4.1.0
- bitops 1.0-7
- compiler 4.1.0
- crayon 1.4.1
- datasets 4.1.0
- formatR 1.11
- futile.logger 1.4.3
- futile.options 1.0.1
- getopt 1.20.3
- grDevices 4.1.0
- graphics 4.1.0
- grid 4.1.0
- lambda.r 1.2.4
- lattice 0.20-44
- matrixStats 0.59.0
- methods 4.1.0
- optparse 1.6.6
- parallel 4.1.0
- restfulr 0.0.13
- rjson 0.2.20
- rtracklayer 1.52.0
- snow 0.4-3
- splines 4.1.0
- stats4 4.1.0
- stats 4.1.0
- tcltk 4.1.0
- tools 4.1.0
- translations 4.1.0
- utils 4.1.0
- yaml 2.2.1
- zlibbioc 1.38.0
- debian/adduser 3.118
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- debian/coreutils 8.30-3
- debian/dash 0.5.10.2-5
- debian/debconf 1.5.71
- debian/debian-archive-keyring 2019.1
- debian/debianutils 4.8.6.1
- debian/diffutils 1:3.7-3
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- debian/libxmuu1 2:1.1.2-2 b3
- debian/libxrender1 1:0.9.10-1
- debian/libzstd1 1.3.8 dfsg-3
- debian/login 1:4.5-1.1
- debian/lsb-base 10.2019051400
- debian/mawk 1.3.3-17 b3
- debian/mercurial-common 4.8.2-1 deb10u1
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- debian/mount 2.33.1-0.1
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- cisd-jhdf5:cisd-jhdf5 *
- com.google.guava:guava 15.0
- com.lowagie.tools.ToolboxAvailable:itext 2.1.6
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- commons-io:commons-io 1.4
- commons-io:commons-io 2.4
- commons-lang:commons-lang 2.4
- commons-lang:commons-lang 2.6
- commons-logging:commons-logging 1.1.1
- ejml:ejml 0.24
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- jbzip2:jbzip2 0.9
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- jrt-fs:jrt-fs 11.0.9.1-internal
- junit:junit 4.4
- miglayout:miglayout 3.7.4
- net.sf.jopt-simple:jopt-simple 5.0.3
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- org.apache.commons:commons-math 2.0
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- org.apache.geronimo.specs:geronimo-stax-api_1.0_spec 1.0.1
- org.apache.logging.log4j:log4j-api 2.5
- org.apache.logging.log4j:log4j-core 2.5
- org.apache.servicemix.bundles:org.apache.servicemix.bundles.jaxb-impl 2.1.6_1
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- org.apache.xmlcommons.Version:xml-apis 1.0.b2
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