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mknudson/share_task_cell_annotation : mei-cell-annotation

Latest release: over 1 year ago - 42 downloads - 316 dependencies

JSON

Dependencies

@PKGNAME@ @PKGVERSION@
@PKGNAME@ @VERSION@
AnnotationDbi 1.56.2
AnnotationFilter 1.18.0
BH 1.81.0-1
Biobase 2.54.0
BiocFileCache 2.2.1
BiocGenerics 0.40.0
BiocIO 1.4.0
BiocManager 1.30.21.1
BiocParallel 1.28.3
BiocVersion 3.14.0
Biostrings 2.62.0
DBI 1.1.3
DelayedArray 0.20.0
EnsDb.Hsapiens.v86 2.99.0
EnsDb.Mmusculus.v79 2.99.0
FNN 1.1.3.2
GenomeInfoDb 1.30.1
GenomeInfoDbData 1.2.7
GenomicAlignments 1.30.0
GenomicFeatures 1.46.5
GenomicRanges 1.46.1
IRanges 2.28.0
IRdisplay 1.1
IRkernel 1.3.2
KEGGREST 1.34.0
KernSmooth 2.23-20
MASS 7.3-55
Matrix 1.4-0
Matrix 1.6-0
MatrixGenerics 1.6.0
ProtGenerics 1.26.0
R6 2.5.1
RANN 2.6.1
RColorBrewer 1.1-3
RCurl 1.98-1.12
ROCR 1.0-11
RSQLite 2.3.1
Rcpp 1.0.11
RcppAnnoy 0.0.21
RcppArmadillo 0.12.4.1.0
RcppEigen 0.3.3.9.3
RcppProgress 0.4.2
RcppProgressArmadillo 0.2
RcppProgressETA 0.1
RcppProgressExample 0.2
RcppTOML 0.2.2
Rhdf5lib 1.16.0
Rhtslib 1.26.0
Rsamtools 2.10.0
Rtsne 0.16
S4Vectors 0.32.4
Seurat 4.3.0
SeuratObject 4.1.3
SummarizedExperiment 1.24.0
XML 3.99-0.14
XVector 0.34.0
abind 1.4-5
askpass 1.1
base64enc 0.1-3
base 4.1.2
biomaRt 2.50.3
bit64 4.0.5
bit 4.0.5
bitops 1.0-7
blob 1.2.4
boot 1.3-28
bslib 0.5.0
caTools 1.18.2
cachem 1.0.8
class 7.3-20
cli 3.6.1
cluster 2.1.2
codetools 0.2-18
colorspace 2.1-0
common 1.0.7
commonmark 1.9.0
compiler 4.1.2
cowplot 1.1.1
cpp11 0.4.5
crayon 1.5.2
crosstalk 1.2.0
curl 5.0.1
data.table 1.14.8
datasets 4.1.2
dbplyr 2.3.3
deldir 1.0-9
digest 0.6.33
dplyr 1.1.2
dqrng 0.3.0
ellipsis 0.3.2
ensembldb 2.18.4
evaluate 0.21
fansi 1.0.4
farver 2.1.1
fastmap 1.1.1
filelock 1.0.2
fitdistrplus 1.1-11
fontawesome 0.5.1
foreign 0.8-82
formatR 1.14
fs 1.6.3
futile.logger 1.4.3
futile.options 1.0.1
future.apply 1.11.0
future 1.33.0
generics 0.1.3
getopt 1.20.3
ggplot2 3.4.2
ggrepel 0.9.3
ggridges 0.5.4
globals 0.16.2
glue 1.6.2
goftest 1.2-3
gplots 3.1.3
grDevices 4.1.2
graphics 4.1.2
grid 4.1.2
gridExtra 2.3
gtable 0.3.3
gtools 3.9.4
hdf5r 1.3.8
here 1.0.1
highr 0.10
hms 1.1.3
htmltools 0.5.5
htmlwidgets 1.6.2
httpuv 1.6.11
httr 1.4.6
ica 1.0-3
igraph 1.5.0.1
irlba 2.3.5.1
isoband 0.2.7
jquerylib 0.1.4
jsonlite 1.8.7
knitr 1.43
labeling 0.4.2
lambda.r 1.2.4
later 1.3.1
lattice 0.20-45
lazyeval 0.2.2
leiden 0.4.3
lifecycle 1.0.3
listenv 0.9.0
lmtest 0.9-40
logr 1.3.4
magrittr 2.0.3
matrixStats 1.0.0
memoise 2.0.1
methods 4.1.2
mgcv 1.8-39
mime 0.12
miniUI 0.1.1.1
munsell 0.5.0
nlme 3.1-155
nnet 7.3-17
openssl 2.1.0
optparse 1.7.3
org.testing.db 0.1
parallel 4.1.2
parallelly 1.36.0
patchwork 1.1.2
pbapply 1.7-2
pbdZMQ 0.3-9
pillar 1.9.0
pkgconfig 2.0.3
plogr 0.2.0
plotly 4.10.2
plyr 1.8.8
png 0.1-8
polyclip 1.10-4
prettyunits 1.1.1
progress 1.2.2
progressr 0.13.0
promises 1.2.0.1
purrr 1.0.1
rappdirs 0.3.3
remotes 2.4.2.1
repr 1.1.6
reshape2 1.4.4
restfulr 0.0.15
reticulate 1.30
rhdf5 2.38.1
rhdf5filters 1.6.0
rjson 0.2.21
rlang 1.1.1
rmarkdown 2.23
rpart 4.1.16
rprojroot 2.0.3
rtracklayer 1.54.0
sass 0.4.7
scales 1.2.1
scattermore 1.2
sctransform 0.3.5
shiny 1.7.4.1
sitmo 2.0.2
snow 0.4-4
sourcetools 0.1.7-1
sp 2.0-0
spatial 7.3-15
spatstat.data 3.0-1
spatstat.explore 3.2-1
spatstat.geom 3.2-4
spatstat.random 3.1-5
spatstat.sparse 3.0-2
spatstat.utils 3.0-3
splines 4.1.2
stats4 4.1.2
stats 4.1.2
stringi 1.7.12
stringr 1.5.0
survival 3.2-13
sys 3.4.2
tcltk 4.1.2
tensor 1.5
testRcppAttributePackage 1.0
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
this.path 1.4.0
tibble 3.2.1
tidyr 1.3.0
tidyselect 1.2.0
tinytex 0.45
tools 4.1.2
translations 4.1.2
utf8 1.2.3
utils 4.1.2
uuid 1.1-0
uwot 0.1.16
vctrs 0.6.3
viridisLite 0.4.2
withr 2.5.0
xfun 0.39
xml2 1.3.5
xtable 1.8-4
yaml 2.3.7
zlibbioc 1.40.0
zoo 1.8-12

bash 5.1.16
python 3.10.6

bootstrap-accessibility-plugin 1.0.6
bootstrap-colorpicker 3.4.0
bootstrap-sass 3.4.1
bootstrap 4.6.0
bootstrap 5.2.2
bootswatch 3.4.1
bootswatch 4.6.0
bootswatch 5.2.2

Pillow 10.0.0
Pygments 2.11.2
aiobotocore 2.5.2
aiohttp 3.8.5
aioitertools 0.11.0
aiosignal 1.3.1
anndata 0.9.2
async-timeout 4.0.2
attrs 23.1.0
botocore 1.29.161
cellxgene-census 1.3.1
certifi 2023.7.22
charset-normalizer 3.2.0
contourpy 1.1.0
cycler 0.11.0
fonttools 4.41.1
frozenlist 1.4.0
fsspec 2023.6.0
h5py 3.9.0
idna 3.4
jmespath 1.0.1
joblib 1.3.1
kiwisolver 1.4.4
llvmlite 0.39.1
lxml 4.8.0
matplotlib 3.7.2
meson 0.61.2
multidict 6.0.4
natsort 8.4.0
networkx 3.1
numba 0.56.4
numpy 1.23.5
packaging 23.1
pandas 2.0.3
patsy 0.5.3
pip 22.0.2
pyarrow 12.0.1
pynndescent 0.5.10
pyparsing 3.0.9
python-dateutil 2.8.2
pytz 2023.3
requests 2.31.0
s3fs 2023.6.0
scanpy 1.9.3
scikit-learn 1.3.0
scipy 1.10.1
seaborn 0.12.2
session-info 1.0.0
setuptools 59.6.0
six 1.16.0
somacore 1.0.3
statsmodels 0.14.0
stdlib-list 0.9.0
threadpoolctl 3.2.0
tiledb 0.21.6
tiledbsoma 1.2.7
tqdm 4.65.0
typing_extensions 4.7.1
tzdata 2023.3
umap-learn 0.5.3
urllib3 1.26.16
wheel 0.37.1
wrapt 1.15.0
yarl 1.9.2