mbaardwijk/hmftools : latest
Latest release: over 3 years ago - 84 downloads - 405 dependencies
JSONDependencies
- @PKGNAME@ @PKGVERSION@
- @PKGNAME@ @VERSION@
- AnnotationDbi 1.56.2
- BH 1.81.0-1
- BSgenome 1.62.0
- Biobase 2.54.0
- BiocFileCache 2.2.0
- BiocGenerics 0.40.0
- BiocIO 1.4.0
- BiocParallel 1.28.3
- Biostrings 2.62.0
- Cairo 1.6-0
- DBI 1.1.3
- DelayedArray 0.20.0
- GenomeInfoDb 1.30.1
- GenomeInfoDbData 1.2.7
- GenomicAlignments 1.30.0
- GenomicFeatures 1.46.1
- GenomicRanges 1.46.1
- IRanges 2.28.0
- KEGGREST 1.34.0
- MASS 7.3-58.3
- Matrix 1.5-3
- MatrixGenerics 1.6.0
- R6 2.5.1
- RColorBrewer 1.1-3
- RCurl 1.98-1.10
- RSQLite 2.3.0
- Rcpp 1.0.10
- Rhtslib 1.26.0
- Rsamtools 2.10.0
- S4Vectors 0.32.4
- SummarizedExperiment 1.24.0
- VariantAnnotation 1.40.0
- XML 3.99-0.14
- XVector 0.34.0
- askpass 1.1
- assertthat 0.2.1
- base 4.1.3
- biomaRt 2.50.0
- bit64 4.0.5
- bit 4.0.5
- bitops 1.0-7
- blob 1.2.4
- cachem 1.0.7
- cli 3.6.0
- colorspace 2.1-0
- compiler 4.1.3
- copynumber 1.34.0
- cowplot 1.1.1
- cpp11 0.4.3
- crayon 1.5.2
- curl 4.3.3
- datasets 4.1.3
- dbplyr 2.3.1
- digest 0.6.31
- dplyr 1.1.0
- ellipsis 0.3.2
- fansi 1.0.4
- farver 2.1.1
- fastmap 1.1.1
- filelock 1.0.2
- formatR 1.14
- futile.logger 1.4.3
- futile.options 1.0.1
- generics 0.1.3
- ggplot2 3.4.1
- glue 1.6.2
- grDevices 4.1.3
- graphics 4.1.3
- grid 4.1.3
- gtable 0.3.2
- hms 1.1.2
- httr 1.4.5
- isoband 0.2.7
- jsonlite 1.8.4
- labeling 0.4.2
- lambda.r 1.2.4
- lattice 0.20-45
- lifecycle 1.0.3
- magrittr 2.0.3
- matrixStats 0.63.0
- memoise 2.0.1
- methods 4.1.3
- mgcv 1.8-42
- mime 0.12
- munsell 0.5.0
- nlme 3.1-162
- openssl 2.0.6
- org.testing.db 0.1
- parallel 4.1.3
- pillar 1.8.1
- pkgconfig 2.0.3
- plogr 0.2.0
- png 0.1-8
- prettyunits 1.1.1
- progress 1.2.2
- purrr 1.0.1
- rappdirs 0.3.3
- restfulr 0.0.15
- rjson 0.2.21
- rlang 1.1.0
- rtracklayer 1.54.0
- scales 1.2.1
- snow 0.4-4
- splines 4.1.3
- stats4 4.1.3
- stats 4.1.3
- stringi 1.7.12
- stringr 1.5.0
- sys 3.4.1
- tcltk 4.1.3
- testRcppAttributePackage 1.0
- testRcppClass 0.1
- testRcppInterfaceExporter 0.1.0
- testRcppInterfaceUser 0.1.0
- testRcppModule 0.1
- testRcppPackage 0.1.0
- tibble 3.2.1
- tidyr 1.3.0
- tidyselect 1.2.0
- tools 4.1.3
- translations 4.1.3
- utf8 1.2.3
- utils 4.1.3
- vctrs 0.6.0
- viridisLite 0.4.1
- withr 2.5.0
- xml2 1.3.3
- yaml 2.3.7
- zlibbioc 1.40.0
- ubuntu/adduser 3.118ubuntu2
- ubuntu/apt 2.0.9
- ubuntu/base-files 11ubuntu5.6
- ubuntu/base-passwd 3.5.47
- ubuntu/bash 5.0-6ubuntu1.2
- ubuntu/binutils-common 2.34-6ubuntu1.4
- ubuntu/binutils-x86-64-linux-gnu 2.34-6ubuntu1.4
- ubuntu/binutils 2.34-6ubuntu1.4
- ubuntu/bsdutils 1:2.34-0.1ubuntu9.3
- ubuntu/build-essential 12.8ubuntu1.1
- ubuntu/bzip2 1.0.8-2
- ubuntu/ca-certificates 20211016ubuntu0.20.04.1
- ubuntu/cmake-data 3.16.3-1ubuntu1.20.04.1
- ubuntu/cmake 3.16.3-1ubuntu1.20.04.1
- ubuntu/coreutils 8.30-3ubuntu2
- ubuntu/cpp-9 9.4.0-1ubuntu1~20.04.1
- ubuntu/cpp 4:9.3.0-1ubuntu2
- ubuntu/curl 7.68.0-1ubuntu2.18
- ubuntu/dash 0.5.10.2-6
- ubuntu/debconf 1.5.73
- ubuntu/debianutils 4.9.1
- ubuntu/diffutils 1:3.7-3
- ubuntu/dirmngr 2.2.19-3ubuntu2.2
- ubuntu/dpkg-dev 1.19.7ubuntu3.2
- ubuntu/dpkg 1.19.7ubuntu3.2
- ubuntu/e2fsprogs 1.45.5-2ubuntu1.1
- ubuntu/fakeroot 1.24-1
- ubuntu/fdisk 2.34-0.1ubuntu9.3
- ubuntu/findutils 4.7.0-1ubuntu1
- ubuntu/g -9 9.4.0-1ubuntu1~20.04.1
- ubuntu/g 4:9.3.0-1ubuntu2
- ubuntu/gcc-10-base 10.3.0-1ubuntu1~20.04
- ubuntu/gcc-9-base 9.4.0-1ubuntu1~20.04.1
- ubuntu/gcc-9 9.4.0-1ubuntu1~20.04.1
- ubuntu/gcc 4:9.3.0-1ubuntu2
- ubuntu/git-man 1:2.25.1-1ubuntu3.10
- ubuntu/git 1:2.25.1-1ubuntu3.10
- ubuntu/gnupg-l10n 2.2.19-3ubuntu2.2
- ubuntu/gnupg-utils 2.2.19-3ubuntu2.2
- ubuntu/gnupg 2.2.19-3ubuntu2.2
- ubuntu/gpg-agent 2.2.19-3ubuntu2.2
- ubuntu/gpg-wks-client 2.2.19-3ubuntu2.2
- ubuntu/gpg-wks-server 2.2.19-3ubuntu2.2
- ubuntu/gpg 2.2.19-3ubuntu2.2
- ubuntu/gpgconf 2.2.19-3ubuntu2.2
- ubuntu/gpgsm 2.2.19-3ubuntu2.2
- ubuntu/gpgv 2.2.19-3ubuntu2.2
- ubuntu/grep 3.4-1
- ubuntu/gzip 1.10-0ubuntu4.1
- ubuntu/hostname 3.23
- ubuntu/icu-devtools 66.1-2ubuntu2.1
- ubuntu/init-system-helpers 1.57
- ubuntu/krb5-locales 1.17-6ubuntu4.3
- ubuntu/less 551-1ubuntu0.1
- ubuntu/libacl1 2.2.53-6
- ubuntu/libalgorithm-diff-perl 1.19.03-2
- ubuntu/libalgorithm-diff-xs-perl 0.04-6
- ubuntu/libalgorithm-merge-perl 0.08-3
- ubuntu/libapt-pkg6.0 2.0.9
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- ubuntu/libasan5 9.4.0-1ubuntu1~20.04.1
- ubuntu/libasn1-8-heimdal 7.7.0 dfsg-1ubuntu1.4
- ubuntu/libassuan0 2.5.3-7ubuntu2
- ubuntu/libatomic1 10.3.0-1ubuntu1~20.04
- ubuntu/libattr1 1:2.4.48-5
- ubuntu/libaudit-common 1:2.8.5-2ubuntu6
- ubuntu/libaudit1 1:2.8.5-2ubuntu6
- ubuntu/libbinutils 2.34-6ubuntu1.4
- ubuntu/libblkid1 2.34-0.1ubuntu9.3
- ubuntu/libbrotli1 1.0.7-6ubuntu0.1
- ubuntu/libbsd0 0.10.0-1
- ubuntu/libbz2-1.0 1.0.8-2
- ubuntu/libc-bin 2.31-0ubuntu9.9
- ubuntu/libc-dev-bin 2.31-0ubuntu9.9
- ubuntu/libc6-dev 2.31-0ubuntu9.9
- ubuntu/libc6 2.31-0ubuntu9.9
- ubuntu/libcap-ng0 0.7.9-2.1build1
- ubuntu/libcbor0.6 0.6.0-0ubuntu1
- ubuntu/libcc1-0 10.3.0-1ubuntu1~20.04
- ubuntu/libcom-err2 1.45.5-2ubuntu1.1
- ubuntu/libcrypt-dev 1:4.4.10-10ubuntu4
- ubuntu/libcrypt1 1:4.4.10-10ubuntu4
- ubuntu/libctf-nobfd0 2.34-6ubuntu1.4
- ubuntu/libctf0 2.34-6ubuntu1.4
- ubuntu/libcurl3-gnutls 7.68.0-1ubuntu2.18
- ubuntu/libcurl4-gnutls-dev 7.68.0-1ubuntu2.18
- ubuntu/libcurl4 7.68.0-1ubuntu2.18
- ubuntu/libdb5.3 5.3.28 dfsg1-0.6ubuntu2
- ubuntu/libdebconfclient0 0.251ubuntu1
- ubuntu/libdpkg-perl 1.19.7ubuntu3.2
- ubuntu/libedit2 3.1-20191231-1
- ubuntu/liberror-perl 0.17029-1
- ubuntu/libexpat1 2.2.9-1ubuntu0.6
- ubuntu/libext2fs2 1.45.5-2ubuntu1.1
- ubuntu/libfakeroot 1.24-1
- ubuntu/libfdisk1 2.34-0.1ubuntu9.3
- ubuntu/libffi7 3.3-4
- ubuntu/libfido2-1 1.3.1-1ubuntu2
- ubuntu/libfile-fcntllock-perl 0.22-3build4
- ubuntu/libgcc-9-dev 9.4.0-1ubuntu1~20.04.1
- ubuntu/libgcc-s1 10.3.0-1ubuntu1~20.04
- ubuntu/libgcrypt20 1.8.5-5ubuntu1.1
- ubuntu/libgdbm-compat4 1.18.1-5
- ubuntu/libgdbm6 1.18.1-5
- ubuntu/libgmp10 2:6.2.0 dfsg-4ubuntu0.1
- ubuntu/libgnutls30 3.6.13-2ubuntu1.8
- ubuntu/libgomp1 10.3.0-1ubuntu1~20.04
- ubuntu/libgpg-error0 1.37-1
- ubuntu/libgpm2 1.20.7-5
- ubuntu/libgssapi-krb5-2 1.17-6ubuntu4.3
- ubuntu/libgssapi3-heimdal 7.7.0 dfsg-1ubuntu1.4
- ubuntu/libhcrypto4-heimdal 7.7.0 dfsg-1ubuntu1.4
- ubuntu/libheimbase1-heimdal 7.7.0 dfsg-1ubuntu1.4
- ubuntu/libheimntlm0-heimdal 7.7.0 dfsg-1ubuntu1.4
- ubuntu/libhogweed5 3.5.1 really3.5.1-2ubuntu0.2
- ubuntu/libhx509-5-heimdal 7.7.0 dfsg-1ubuntu1.4
- ubuntu/libicu-dev 66.1-2ubuntu2.1
- ubuntu/libicu66 66.1-2ubuntu2.1
- ubuntu/libidn2-0 2.2.0-2
- ubuntu/libisl22 0.22.1-1
- ubuntu/libitm1 10.3.0-1ubuntu1~20.04
- ubuntu/libjsoncpp1 1.7.4-3.1ubuntu2
- ubuntu/libk5crypto3 1.17-6ubuntu4.3
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- ubuntu/libksba8 1.3.5-2ubuntu0.20.04.2
- ubuntu/libldap-2.4-2 2.4.49 dfsg-2ubuntu1.9
- ubuntu/libldap-common 2.4.49 dfsg-2ubuntu1.9
- ubuntu/liblocale-gettext-perl 1.07-4
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- ubuntu/libnettle7 3.5.1 really3.5.1-2ubuntu0.2
- ubuntu/libnghttp2-14 1.40.0-1build1
- ubuntu/libnpth0 1.6-1
- ubuntu/libp11-kit0 0.23.20-1ubuntu0.1
- ubuntu/libpam-modules-bin 1.3.1-5ubuntu4.6
- ubuntu/libpam-modules 1.3.1-5ubuntu4.6
- ubuntu/libpam-runtime 1.3.1-5ubuntu4.6
- ubuntu/libpam0g 1.3.1-5ubuntu4.6
- ubuntu/libpcre2-8-0 10.34-7ubuntu0.1
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- ubuntu/libperl5.30 5.30.0-9ubuntu0.3
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- ubuntu/libpsl5 0.21.0-1ubuntu1
- ubuntu/libquadmath0 10.3.0-1ubuntu1~20.04
- ubuntu/libreadline8 8.0-4
- ubuntu/librhash0 1.3.9-1
- ubuntu/libroken18-heimdal 7.7.0 dfsg-1ubuntu1.4
- ubuntu/librtmp1 2.4 20151223.gitfa8646d.1-2build1
- ubuntu/libsasl2-2 2.1.27 dfsg-2ubuntu0.1
- ubuntu/libsasl2-modules-db 2.1.27 dfsg-2ubuntu0.1
- ubuntu/libsasl2-modules 2.1.27 dfsg-2ubuntu0.1
- ubuntu/libseccomp2 2.5.1-1ubuntu1~20.04.2
- ubuntu/libselinux1 3.0-1build2
- ubuntu/libsemanage-common 3.0-1build2
- ubuntu/libsemanage1 3.0-1build2
- ubuntu/libsepol1 3.0-1ubuntu0.1
- ubuntu/libsmartcols1 2.34-0.1ubuntu9.3
- ubuntu/libsqlite3-0 3.31.1-4ubuntu0.5
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- ubuntu/libxml2-dev 2.9.10 dfsg-5ubuntu0.20.04.5
- ubuntu/libxml2 2.9.10 dfsg-5ubuntu0.20.04.5
- ubuntu/libxmuu1 2:1.1.3-0ubuntu1
- ubuntu/libzstd1 1.4.4 dfsg-3ubuntu0.1
- ubuntu/linux-libc-dev 5.4.0-144.161
- ubuntu/login 1:4.8.1-1ubuntu5.20.04.4
- ubuntu/logsave 1.45.5-2ubuntu1.1
- ubuntu/lsb-base 11.1.0ubuntu2
- ubuntu/make 4.2.1-1.2
- ubuntu/manpages-dev 5.05-1
- ubuntu/manpages 5.05-1
- ubuntu/mawk 1.3.4.20200120-2
- ubuntu/mount 2.34-0.1ubuntu9.3
- ubuntu/ncurses-base 6.2-0ubuntu2
- ubuntu/ncurses-bin 6.2-0ubuntu2
- ubuntu/netbase 6.1
- ubuntu/openssh-client 1:8.2p1-4ubuntu0.5
- ubuntu/openssl 1.1.1f-1ubuntu2.17
- ubuntu/passwd 1:4.8.1-1ubuntu5.20.04.4
- ubuntu/patch 2.7.6-6
- ubuntu/perl-base 5.30.0-9ubuntu0.3
- ubuntu/perl-modules-5.30 5.30.0-9ubuntu0.3
- ubuntu/perl 5.30.0-9ubuntu0.3
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- ubuntu/procps 2:3.3.16-1ubuntu2.3
- ubuntu/publicsuffix 20200303.0012-1
- ubuntu/readline-common 8.0-4
- ubuntu/sed 4.7-1
- ubuntu/sensible-utils 0.0.12 nmu1
- ubuntu/sysvinit-utils 2.96-2.1ubuntu1
- ubuntu/tar 1.30 dfsg-7ubuntu0.20.04.3
- ubuntu/tzdata 2022g-0ubuntu0.20.04.1
- ubuntu/ubuntu-keyring 2020.02.11.4
- ubuntu/util-linux 2.34-0.1ubuntu9.3
- ubuntu/wget 1.20.3-1ubuntu2
- ubuntu/xauth 1:1.1-0ubuntu1
- ubuntu/xz-utils 5.2.4-1ubuntu1.1
- ubuntu/zlib1g-dev 1:1.2.11.dfsg-2ubuntu1.5
- ubuntu/zlib1g 1:1.2.11.dfsg-2ubuntu1.5
- com.fasterxml.jackson.core:jackson-annotations 2.11.1
- com.fasterxml.jackson.core:jackson-core 2.11.1
- com.fasterxml.jackson.core:jackson-databind 2.11.1
- com.fasterxml.jackson.dataformat:jackson-dataformat-xml 2.11.1
- com.fasterxml.jackson.module:jackson-module-jaxb-annotations 2.11.1
- com.fasterxml.woodstox:woodstox-core 6.2.1
- com.google.code.findbugs:jsr305 3.0.2
- com.google.code.gson:gson 2.8.9
- com.google.errorprone:error_prone_annotations 2.7.1
- com.google.guava:failureaccess 1.0.1
- com.google.guava:guava 31.0.1-jre
- com.google.guava:listenablefuture 9999.0-empty-to-avoid-conflict-with-guava
- com.google.j2objc:j2objc-annotations 1.3
- com.google.protobuf:protobuf-java 3.6.1
- com.hartwig:amber 3.9
- com.hartwig:cobalt 1.13
- com.hartwig:hmf-common local-SNAPSHOT
- com.hartwig:patient-db 3.71.1
- com.hartwig:purple 3.7.1
- com.sun.xml.bind.jaxb:isorelax 20090621
- commons-cli:commons-cli 1.3.1
- commons-logging:commons-logging 1.1.1
- io.r2dbc:r2dbc-spi 0.9.0.M1
- jakarta.activation:jakarta.activation-api 1.2.1
- jakarta.xml.bind:jakarta.xml.bind-api 2.3.2
- javax.activation:javax.activation-api 1.2.0
- javax.xml.bind:jaxb-api 2.3.1
- jrt-fs:jrt-fs 17.0.3-internal
- net.java.dev.msv:xsdlib 2013.6.1
- org.apache.commons:commons-compress 1.19
- org.apache.commons:commons-csv 1.9.0
- org.apache.commons:commons-dbcp2 2.1.1
- org.apache.commons:commons-jexl 2.1.1
- org.apache.commons:commons-lang3 3.6
- org.apache.commons:commons-math3 3.6
- org.apache.commons:commons-pool2 2.4.2
- org.apache.logging.log4j:log4j-api 2.17.1
- org.apache.logging.log4j:log4j-core 2.17.1
- org.codehaus.woodstox:stax2-api 4.2.1
- org.jetbrains:annotations 13.0
- org.jooq:jooq 3.15.5