luisas/tcoffee : latest

Latest release: over 3 years ago - 35 downloads - 418 dependencies

JSON

Dependencies

KernSmooth 2.23-13
MASS 7.3-34
Matrix 1.1-4
base 3.1.1
boot 1.3-13
class 7.3-11
cluster 1.15.3
codetools 0.2-9
compiler 3.1.1
datasets 3.1.1
foreign 0.8-61
grDevices 3.1.1
graphics 3.1.1
grid 3.1.1
lattice 0.20-29
methods 3.1.1
mgcv 1.8-3
nlme 3.1-117
nnet 7.3-8
parallel 3.1.1
rpart 4.1-8
spatial 7.3-8
splines 3.1.1
stats4 3.1.1
stats 3.1.1
survival 2.37-7
tcltk 3.1.1
tools 3.1.1
translations 3.1.1
utils 3.1.1

debian/acl 2.2.52-2
debian/adduser 3.113 nmu3
debian/apt 1.0.9.8.6
debian/autoconf 2.69-8
debian/automake 1:1.14.1-4 deb8u1
debian/autotools-dev 20140911.1
debian/base-files 8 deb8u11
debian/base-passwd 3.5.37
debian/bash 4.3-11 deb8u2
debian/binutils 2.25-5 deb8u1
debian/bsdutils 1:2.25.2-6
debian/build-essential 11.7
debian/bzip2 1.0.6-7 deb8u2
debian/ca-certificates-java 20140324
debian/ca-certificates 20141019 deb8u4
debian/cmake-data 3.0.2-1 deb8u1
debian/cmake 3.0.2-1 deb8u1
debian/coreutils 8.23-4
debian/cpp-4.9 4.9.2-10 deb8u2
debian/cpp 4:4.9.2-2
debian/curl 7.38.0-4 deb8u16
debian/dash 0.5.7-4 b1
debian/debconf-i18n 1.5.56 deb8u1
debian/debconf 1.5.56 deb8u1
debian/debian-archive-keyring 2017.5~deb8u1
debian/debianutils 4.4 b1
debian/default-jdk 2:1.7-52
debian/default-jre-headless 2:1.7-52
debian/default-jre 2:1.7-52
debian/dh-python 1.20141111-2
debian/diffutils 1:3.3-1 b1
debian/dmsetup 2:1.02.90-2.2 deb8u1
debian/dpkg-dev 1.17.27
debian/dpkg 1.17.27
debian/e2fslibs 1.42.12-2 deb8u2
debian/e2fsprogs 1.42.12-2 deb8u2
debian/ed 1.10-2
debian/findutils 4.4.2-9 b1
debian/flex 2.5.39-8 deb8u2
debian/fontconfig-config 2.11.0-6.3 deb8u1
debian/fontconfig 2.11.0-6.3 deb8u1
debian/fonts-dejavu-core 2.34-1
debian/g -4.9 4.9.2-10 deb8u2
debian/g 4:4.9.2-2
debian/gcc-4.8-base 4.8.4-1
debian/gcc-4.9-base 4.9.2-10 deb8u2
debian/gcc-4.9 4.9.2-10 deb8u2
debian/gcc 4:4.9.2-2
debian/gfortran-4.9 4.9.2-10 deb8u2
debian/gfortran 4:4.9.2-2
debian/git-man 1:2.1.4-2.1 deb8u10
debian/git 1:2.1.4-2.1 deb8u10
debian/gnupg 1.4.18-7 deb8u5
debian/gpgv 1.4.18-7 deb8u5
debian/grep 2.20-4.1
debian/gzip 1.6-4
debian/hostname 3.15
debian/init 1.22
debian/initscripts 2.88dsf-59
debian/insserv 1.14.0-5
debian/iproute2 3.16.0-2
debian/iputils-ping 3:20121221-5 b2
debian/java-common 0.52
debian/less 458-3
debian/libacl1 2.2.52-2
debian/libapt-pkg4.12 1.0.9.8.6
debian/libarchive13 3.1.2-11 deb8u8
debian/libargtable2-0 12-1.1
debian/libasan1 4.9.2-10 deb8u2
debian/libasound2-data 1.0.28-1
debian/libasound2 1.0.28-1
debian/libasyncns0 0.8-5
debian/libatk-wrapper-java-jni 0.30.5-1
debian/libatk-wrapper-java 0.30.5-1
debian/libatk1.0-0 2.14.0-1
debian/libatk1.0-data 2.14.0-1
debian/libatomic1 4.9.2-10 deb8u2
debian/libattr1 1:2.4.47-2
debian/libaudit-common 1:2.4-1
debian/libaudit1 1:2.4-1 b1
debian/libavahi-client3 0.6.31-5
debian/libavahi-common-data 0.6.31-5
debian/libavahi-common3 0.6.31-5
debian/libblas-common 1.2.20110419-10
debian/libblas3 1.2.20110419-10
debian/libblkid1 2.25.2-6
debian/libbsd0 0.7.0-2 deb8u1
debian/libbz2-1.0 1.0.6-7 deb8u2
debian/libbz2-dev 1.0.6-7 deb8u2
debian/libc-bin 2.19-18 deb8u10
debian/libc-dev-bin 2.19-18 deb8u10
debian/libc6-dbg 2.19-18 deb8u10
debian/libc6-dev 2.19-18 deb8u10
debian/libc6 2.19-18 deb8u10
debian/libcairo2 1.14.0-2.1 deb8u2
debian/libcap2-bin 1:2.24-8
debian/libcap2 1:2.24-8
debian/libcilkrts5 4.9.2-10 deb8u2
debian/libcloog-isl4 0.18.2-1 b2
debian/libcomerr2 1.42.12-2 deb8u2
debian/libcryptsetup4 2:1.6.6-5
debian/libcups2 1.7.5-11 deb8u8
debian/libcurl3-gnutls 7.38.0-4 deb8u16
debian/libcurl3 7.38.0-4 deb8u16
debian/libdatrie1 0.2.8-1
debian/libdb5.3 5.3.28-9 deb8u1
debian/libdbus-1-3 1.8.22-0 deb8u3
debian/libdebconfclient0 0.192
debian/libdevmapper1.02.1 2:1.02.90-2.2 deb8u1
debian/libdpkg-perl 1.17.27
debian/libdrm2 2.4.58-2
debian/liberror-perl 0.17-1.1
debian/libexpat1 2.1.0-6 deb8u6
debian/libffi6 3.1-2 deb8u1
debian/libfl-dev 2.5.39-8 deb8u2
debian/libflac8 1.3.0-3
debian/libfontconfig1 2.11.0-6.3 deb8u1
debian/libfreetype6 2.5.2-3 deb8u4
debian/libgcc-4.9-dev 4.9.2-10 deb8u2
debian/libgcc1 1:4.9.2-10 deb8u2
debian/libgcrypt20 1.6.3-2 deb8u8
debian/libgdbm3 1.8.3-13.1
debian/libgdk-pixbuf2.0-0 2.31.1-2 deb8u9
debian/libgdk-pixbuf2.0-common 2.31.1-2 deb8u9
debian/libgfortran-4.9-dev 4.9.2-10 deb8u2
debian/libgfortran3 4.9.2-10 deb8u2
debian/libgif4 4.1.6-11 deb8u1
debian/libgl1-mesa-glx 10.3.2-1 deb8u2
debian/libglapi-mesa 10.3.2-1 deb8u2
debian/libglib2.0-0 2.42.1-1 deb8u3
debian/libgmp10 2:6.0.0 dfsg-6
debian/libgnutls-deb0-28 3.3.30-0 deb8u1
debian/libgnutls-openssl27 3.3.30-0 deb8u1
debian/libgomp1 4.9.2-10 deb8u2
debian/libgpg-error0 1.17-3
debian/libgraphite2-3 1.3.10-1~deb8u1
debian/libgssapi-krb5-2 1.12.1 dfsg-19 deb8u5
debian/libgtk2.0-0 2.24.25-3 deb8u2
debian/libgtk2.0-common 2.24.25-3 deb8u2
debian/libharfbuzz0b 0.9.35-2 deb8u1
debian/libhogweed2 2.7.1-5 deb8u2
debian/libice6 2:1.0.9-1 deb8u1
debian/libicu52 52.1-8 deb8u8
debian/libidn11 1.29-1 deb8u3
debian/libiomp-dev 0.20140926-1
debian/libiomp5 0.20140926-1
debian/libisl10 0.12.2-2
debian/libitm1 4.9.2-10 deb8u2
debian/libjasper1 1.900.1-debian1-2.4 deb8u6
debian/libjbig0 2.1-3.1
debian/libjpeg62-turbo 1:1.3.1-12 deb8u2
debian/libjson-c2 0.11-4 deb8u2
debian/libk5crypto3 1.12.1 dfsg-19 deb8u5
debian/libkeyutils1 1.5.9-5 b1
debian/libkmod2 18-3
debian/libkrb5-3 1.12.1 dfsg-19 deb8u5
debian/libkrb5support0 1.12.1 dfsg-19 deb8u5
debian/liblapack3 3.5.0-4
debian/liblcms2-2 2.6-3 deb8u2
debian/libldap-2.4-2 2.4.40 dfsg-1 deb8u6
debian/liblocale-gettext-perl 1.05-8 b1
debian/liblsan0 4.9.2-10 deb8u2
debian/liblzma5 5.1.1alpha 20120614-2 b3
debian/liblzo2-2 2.08-1.2
debian/libmount1 2.25.2-6
debian/libmpc3 1.0.2-1
debian/libmpdec2 2.4.1-1
debian/libmpfr4 3.1.2-2
debian/libncurses5 5.9 20140913-1 deb8u3
debian/libncursesw5 5.9 20140913-1 deb8u3
debian/libnettle4 2.7.1-5 deb8u2
debian/libnspr4 2:4.12-1 debu8u1
debian/libnss3 2:3.26-1 debu8u11
debian/libogg0 1.3.2-1
debian/libp11-kit0 0.20.7-1
debian/libpam-modules-bin 1.1.8-3.1 deb8u2 b1
debian/libpam-modules 1.1.8-3.1 deb8u2 b1
debian/libpam-runtime 1.1.8-3.1 deb8u2
debian/libpam0g 1.1.8-3.1 deb8u2 b1
debian/libpango-1.0-0 1.36.8-3
debian/libpangocairo-1.0-0 1.36.8-3
debian/libpangoft2-1.0-0 1.36.8-3
debian/libpaper-utils 1.1.24 nmu4
debian/libpaper1 1.1.24 nmu4
debian/libpcre3 2:8.35-3.3 deb8u4
debian/libpcsclite1 1.8.13-1 deb8u1
debian/libpixman-1-0 0.32.6-3 deb8u1
debian/libpng12-0 1.2.50-2 deb8u3
debian/libpng12-dev 1.2.50-2 deb8u3
debian/libprocps3 2:3.3.9-9 deb8u1
debian/libpsl0 0.5.1-1
debian/libpulse0 5.0-13
debian/libpython-stdlib 2.7.9-1
debian/libpython2.7-minimal 2.7.9-2 deb8u5
debian/libpython2.7-stdlib 2.7.9-2 deb8u5
debian/libpython3-stdlib 3.4.2-2
debian/libpython3.4-minimal 3.4.2-1 deb8u7
debian/libpython3.4-stdlib 3.4.2-1 deb8u7
debian/libquadmath0 4.9.2-10 deb8u2
debian/libreadline6 6.3-8 b3
debian/librtmp1 2.4 20150115.gita107cef-1 deb8u1
debian/libruby2.1 2.1.5-2 deb8u10
debian/libsasl2-2 2.1.26.dfsg1-13 deb8u2
debian/libsasl2-modules-db 2.1.26.dfsg1-13 deb8u2
debian/libsctp1 1.0.16 dfsg-2
debian/libselinux1 2.3-2
debian/libsemanage-common 2.3-1
debian/libsemanage1 2.3-1 b1
debian/libsepol1 2.3-2
debian/libsigsegv2 2.10-4 b1
debian/libslang2 2.3.0-2
debian/libsm6 2:1.2.2-1 b1
debian/libsmartcols1 2.25.2-6
debian/libsndfile1 1.0.25-9.1 deb8u4
debian/libsqlite3-0 3.8.7.1-1 deb8u6
debian/libss2 1.42.12-2 deb8u2
debian/libssh2-1 1.4.3-4.1 deb8u6
debian/libssl-dev 1.0.1t-1 deb8u12
debian/libssl1.0.0 1.0.1t-1 deb8u12
debian/libstdc -4.9-dev 4.9.2-10 deb8u2
debian/libstdc 6 4.9.2-10 deb8u2
debian/libsystemd0 215-17 deb8u13
debian/libtasn1-6 4.2-3 deb8u4
debian/libtcl8.5 8.5.17-1
debian/libtext-charwidth-perl 0.04-7 b3
debian/libtext-iconv-perl 1.7-5 b2
debian/libtext-wrapi18n-perl 0.06-7
debian/libthai-data 0.1.21-1
debian/libthai0 0.1.21-1
debian/libtiff5 4.0.3-12.3 deb8u10
debian/libtimedate-perl 2.3000-2
debian/libtinfo5 5.9 20140913-1 deb8u3
debian/libtk8.5 8.5.17-1
debian/libtsan0 4.9.2-10 deb8u2
debian/libubsan0 4.9.2-10 deb8u2
debian/libudev1 215-17 deb8u13
debian/libusb-0.1-4 2:0.1.12-25
debian/libustr-1.0-1 1.0.4-3 b2
debian/libuuid1 2.25.2-6
debian/libvorbis0a 1.3.4-2 deb8u3
debian/libvorbisenc2 1.3.4-2 deb8u3
debian/libwrap0 7.6.q-25
debian/libx11-6 2:1.6.2-3 deb8u2
debian/libx11-data 2:1.6.2-3 deb8u2
debian/libx11-xcb1 2:1.6.2-3 deb8u2
debian/libxau6 1:1.0.8-1
debian/libxcb-dri2-0 1.10-3 b1
debian/libxcb-dri3-0 1.10-3 b1
debian/libxcb-glx0 1.10-3 b1
debian/libxcb-present0 1.10-3 b1
debian/libxcb-render0 1.10-3 b1
debian/libxcb-shm0 1.10-3 b1
debian/libxcb-sync1 1.10-3 b1
debian/libxcb1 1.10-3 b1
debian/libxcomposite1 1:0.4.4-1
debian/libxcursor1 1:1.1.14-1 deb8u2
debian/libxdamage1 1:1.1.4-2 b1
debian/libxdmcp6 1:1.1.1-1 deb8u1
debian/libxext6 2:1.3.3-1
debian/libxfixes3 1:5.0.1-2 deb8u1
debian/libxft2 2.3.2-1
debian/libxi6 2:1.7.4-1 deb8u1
debian/libxinerama1 2:1.1.3-1 b1
debian/libxml2 2.9.1 dfsg1-5 deb8u8
debian/libxrandr2 2:1.4.2-1 deb8u1
debian/libxrender1 1:0.9.8-1 b1
debian/libxshmfence1 1.1-4
debian/libxss1 1:1.2.2-1
debian/libxt6 1:1.1.4-1 b1
debian/libxtst6 2:1.2.2-1 deb8u1
debian/libxxf86vm1 1:1.1.3-1 b1
debian/libyaml-0-2 0.1.6-3
debian/linux-libc-dev 3.16.84-1
debian/login 1:4.2-3 deb8u4
debian/lsb-base 4.1 Debian13 nmu1
debian/m4 1.4.17-4
debian/make 4.0-8.1
debian/manpages-dev 3.74-1
debian/manpages 3.74-1
debian/mawk 1.3.3-17
debian/mime-support 3.58
debian/mount 2.25.2-6
debian/multiarch-support 2.19-18 deb8u10
debian/ncurses-base 5.9 20140913-1 deb8u3
debian/ncurses-bin 5.9 20140913-1 deb8u3
debian/openjdk-7-jdk 7u261-2.6.22-1~deb8u1
debian/openjdk-7-jre-headless 7u261-2.6.22-1~deb8u1
debian/openjdk-7-jre 7u261-2.6.22-1~deb8u1
debian/openssl 1.0.1t-1 deb8u12
debian/passwd 1:4.2-3 deb8u4
debian/patch 2.7.5-1 deb8u3
debian/perl-base 5.20.2-3 deb8u12
debian/perl-modules 5.20.2-3 deb8u12
debian/perl 5.20.2-3 deb8u12
debian/procps 2:3.3.9-9 deb8u1
debian/python-biopython 1.64 dfsg-5
debian/python-minimal 2.7.9-1
debian/python-numpy 1:1.8.2-2
debian/python-pkg-resources 5.5.1-1
debian/python-reportlab-accel 3.1.8-3 deb8u2
debian/python-reportlab 3.1.8-3 deb8u2
debian/python-setuptools 5.5.1-1
debian/python2.7-minimal 2.7.9-2 deb8u5
debian/python2.7 2.7.9-2 deb8u5
debian/python3-minimal 3.4.2-2
debian/python3.4-minimal 3.4.2-1 deb8u7
debian/python3.4 3.4.2-1 deb8u7
debian/python3 3.4.2-2
debian/python 2.7.9-1
debian/r-base-core 3.1.1-1 deb8u1
debian/r-base 3.1.1-1 deb8u1
debian/r-cran-boot 1.3-13-1
debian/r-cran-class 7.3-11-1
debian/r-cran-cluster 1.15.3-1
debian/r-cran-codetools 0.2-9-1
debian/r-cran-foreign 0.8.61-1
debian/r-cran-kernsmooth 2.23-13-1
debian/r-cran-lattice 0.20-29-1
debian/r-cran-mass 7.3-34-1
debian/r-cran-matrix 1.1-4-1
debian/r-cran-mgcv 1.8-3-1
debian/r-cran-nlme 3.1.117-1
debian/r-cran-nnet 7.3-8-1
debian/r-cran-rpart 4.1-8-1
debian/r-cran-spatial 7.3-8-1
debian/r-cran-survival 2.37-7-1
debian/r-recommended 3.1.1-1 deb8u1
debian/readline-common 6.3-8
debian/ruby2.1 2.1.5-2 deb8u10
debian/ruby 1:2.1.5 deb8u2
debian/rubygems-integration 1.8
debian/sed 4.2.2-4 deb8u1
debian/sensible-utils 0.0.9 deb8u1
debian/shared-mime-info 1.3-1
debian/startpar 0.59-3
debian/systemd-sysv 215-17 deb8u13
debian/systemd 215-17 deb8u13
debian/sysv-rc 2.88dsf-59
debian/sysvinit-utils 2.88dsf-59
debian/tar 1.27.1-2 deb8u2
debian/tzdata-java 2019c-0 deb8u1
debian/tzdata 2019c-0 deb8u1
debian/ucf 3.0030
debian/udev 215-17 deb8u13
debian/unzip 6.0-16 deb8u6
debian/util-linux 2.25.2-6
debian/valgrind 1:3.10.0-4
debian/vim-common 2:7.4.488-7 deb8u4
debian/vim-tiny 2:7.4.488-7 deb8u4
debian/wget 1.16-1 deb8u7
debian/x11-common 1:7.7 7
debian/xdg-utils 1.1.0~rc1 git20111210-7.4 deb8u1
debian/xz-utils 5.1.1alpha 20120614-2 b3
debian/zip 3.0-8
debian/zlib1g-dev 1:1.2.8.dfsg-2 deb8u1
debian/zlib1g 1:1.2.8.dfsg-2 deb8u1

bigdecimal 1.2.4
io-console 0.4.2
json 1.8.1
minitest 4.7.5
psych 2.0.5
rake 10.1.0
rdoc 4.1.0
test-unit 2.1.5.0

US_export_policy:US_export_policy *
charsets:charsets *
com.sun:jce 1.7.0_261
com.sun:sunec 1.7.0_261
com.sun:sunjce_provider 1.7.0_261
com.sun:sunpkcs11 1.7.0_261
compilefontconfig:compilefontconfig *
dnsns:dnsns *
dt:dt *
icedtea-sound:icedtea-sound *
java-atk-wrapper:java-atk-wrapper *
javazic:javazic *
jconsole:jconsole *
jsse:jsse 1.7.0_261
local_policy:local_policy *
localedata:localedata *
management-agent:management-agent *
org.debian.security.UpdateCertificates:ca-certificates-java *
resources:resources 1.7.0_261
rhino:rhino 1.7R4
rt:rt 1.7.0_261
sa-jdi:sa-jdi *
tools:tools *
zipfs:zipfs 1.7.0_261