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lindenb/jvarkit : 1b2aedf24
java utilities for bioinformatics. `docker run java -jar /opt/jvarkit/dist/jvarkit.jar`
Latest release: over 1 year ago - 24,767 downloads - 838 dependencies
JSONDependencies
- KernSmooth 2.23-20
- MASS 7.3-55
- Matrix 1.4-0
- base 4.1.2
- boot 1.3-28
- class 7.3-20
- cluster 2.1.2
- codetools 0.2-18
- compiler 4.1.2
- datasets 4.1.2
- foreign 0.8-82
- grDevices 4.1.2
- graphics 4.1.2
- grid 4.1.2
- lattice 0.20-45
- methods 4.1.2
- mgcv 1.8-39
- nlme 3.1-155
- nnet 7.3-17
- parallel 4.1.2
- rpart 4.1.16
- spatial 7.3-15
- splines 4.1.2
- stats4 4.1.2
- stats 4.1.2
- survival 3.2-13
- tcltk 4.1.2
- tools 4.1.2
- translations 4.1.2
- utils 4.1.2
- ubuntu/adduser 3.118ubuntu5
- ubuntu/adwaita-icon-theme 41.0-1ubuntu1
- ubuntu/alsa-topology-conf 1.2.5.1-2
- ubuntu/alsa-ucm-conf 1.2.6.3-1ubuntu1.6
- ubuntu/apt 2.4.9
- ubuntu/at-spi2-core 2.44.0-3
- ubuntu/base-files 12ubuntu4.3
- ubuntu/base-passwd 3.5.52build1
- ubuntu/bash 5.1-6ubuntu1
- ubuntu/binutils-common 2.38-4ubuntu2.2
- ubuntu/binutils-x86-64-linux-gnu 2.38-4ubuntu2.2
- ubuntu/binutils 2.38-4ubuntu2.2
- ubuntu/bsdutils 1:2.37.2-4ubuntu3
- ubuntu/build-essential 12.9ubuntu3
- ubuntu/bzip2-doc 1.0.8-5build1
- ubuntu/bzip2 1.0.8-5build1
- ubuntu/ca-certificates-java 20190909ubuntu1.2
- ubuntu/ca-certificates 20230311ubuntu0.22.04.1
- ubuntu/coreutils 8.32-4.1ubuntu1
- ubuntu/cpp-11 11.3.0-1ubuntu1~22.04.1
- ubuntu/cpp 4:11.2.0-1ubuntu1
- ubuntu/dash 0.5.11 git20210903 057cd650a4ed-3build1
- ubuntu/datamash 1.7-2
- ubuntu/dbus-user-session 1.12.20-2ubuntu4.1
- ubuntu/dbus 1.12.20-2ubuntu4.1
- ubuntu/dconf-gsettings-backend 0.40.0-3
- ubuntu/dconf-service 0.40.0-3
- ubuntu/debconf 1.5.79ubuntu1
- ubuntu/debianutils 5.5-1ubuntu2
- ubuntu/diffutils 1:3.8-0ubuntu2
- ubuntu/dirmngr 2.2.27-3ubuntu2.1
- ubuntu/dmsetup 2:1.02.175-2.1ubuntu4
- ubuntu/dpkg-dev 1.21.1ubuntu2.2
- ubuntu/dpkg 1.21.1ubuntu2.2
- ubuntu/e2fsprogs 1.46.5-2ubuntu1.1
- ubuntu/fakeroot 1.28-1ubuntu1
- ubuntu/findutils 4.8.0-1ubuntu3
- ubuntu/fontconfig-config 2.13.1-4.2ubuntu5
- ubuntu/fontconfig 2.13.1-4.2ubuntu5
- ubuntu/fonts-dejavu-core 2.37-2build1
- ubuntu/fonts-dejavu-extra 2.37-2build1
- ubuntu/g -11 11.3.0-1ubuntu1~22.04.1
- ubuntu/g 4:11.2.0-1ubuntu1
- ubuntu/gcc-11-base 11.3.0-1ubuntu1~22.04.1
- ubuntu/gcc-11 11.3.0-1ubuntu1~22.04.1
- ubuntu/gcc-12-base 12.1.0-2ubuntu1~22.04
- ubuntu/gcc 4:11.2.0-1ubuntu1
- ubuntu/gfortran-11 11.3.0-1ubuntu1~22.04.1
- ubuntu/gfortran 4:11.2.0-1ubuntu1
- ubuntu/gir1.2-glib-2.0 1.72.0-1
- ubuntu/git-man 1:2.34.1-1ubuntu1.9
- ubuntu/git 1:2.34.1-1ubuntu1.9
- ubuntu/gnupg-l10n 2.2.27-3ubuntu2.1
- ubuntu/gnupg-utils 2.2.27-3ubuntu2.1
- ubuntu/gnupg 2.2.27-3ubuntu2.1
- ubuntu/gpg-agent 2.2.27-3ubuntu2.1
- ubuntu/gpg-wks-client 2.2.27-3ubuntu2.1
- ubuntu/gpg-wks-server 2.2.27-3ubuntu2.1
- ubuntu/gpg 2.2.27-3ubuntu2.1
- ubuntu/gpgconf 2.2.27-3ubuntu2.1
- ubuntu/gpgsm 2.2.27-3ubuntu2.1
- ubuntu/gpgv 2.2.27-3ubuntu2.1
- ubuntu/grep 3.7-1build1
- ubuntu/gsettings-desktop-schemas 42.0-1ubuntu1
- ubuntu/gtk-update-icon-cache 3.24.33-1ubuntu2
- ubuntu/gzip 1.10-4ubuntu4.1
- ubuntu/hicolor-icon-theme 0.17-2
- ubuntu/hostname 3.23ubuntu2
- ubuntu/humanity-icon-theme 0.6.16
- ubuntu/icu-devtools 70.1-2
- ubuntu/init-system-helpers 1.62
- ubuntu/java-common 0.72build2
- ubuntu/less 590-1ubuntu0.22.04.1
- ubuntu/libacl1 2.3.1-1
- ubuntu/libalgorithm-diff-perl 1.201-1
- ubuntu/libalgorithm-diff-xs-perl 0.04-6build3
- ubuntu/libalgorithm-merge-perl 0.08-3
- ubuntu/libapparmor1 3.0.4-2ubuntu2.2
- ubuntu/libapt-pkg6.0 2.4.9
- ubuntu/libargon2-1 0~20171227-0.3
- ubuntu/libasan6 11.3.0-1ubuntu1~22.04.1
- ubuntu/libasound2-data 1.2.6.1-1ubuntu1
- ubuntu/libasound2 1.2.6.1-1ubuntu1
- ubuntu/libassuan0 2.5.5-1build1
- ubuntu/libatk-bridge2.0-0 2.38.0-3
- ubuntu/libatk-wrapper-java-jni 0.38.0-5build1
- ubuntu/libatk-wrapper-java 0.38.0-5build1
- ubuntu/libatk1.0-0 2.36.0-3build1
- ubuntu/libatk1.0-data 2.36.0-3build1
- ubuntu/libatomic1 12.1.0-2ubuntu1~22.04
- ubuntu/libatspi2.0-0 2.44.0-3
- ubuntu/libattr1 1:2.5.1-1build1
- ubuntu/libaudit-common 1:3.0.7-1build1
- ubuntu/libaudit1 1:3.0.7-1build1
- ubuntu/libauthen-sasl-perl 2.1600-1.1
- ubuntu/libavahi-client3 0.8-5ubuntu5.1
- ubuntu/libavahi-common-data 0.8-5ubuntu5.1
- ubuntu/libavahi-common3 0.8-5ubuntu5.1
- ubuntu/libbinutils 2.38-4ubuntu2.2
- ubuntu/libblas-dev 3.10.0-2ubuntu1
- ubuntu/libblas3 3.10.0-2ubuntu1
- ubuntu/libblkid1 2.37.2-4ubuntu3
- ubuntu/libbrotli1 1.0.9-2build6
- ubuntu/libbsd0 0.11.5-1
- ubuntu/libbz2-1.0 1.0.8-5build1
- ubuntu/libbz2-dev 1.0.8-5build1
- ubuntu/libc-bin 2.35-0ubuntu3.1
- ubuntu/libc-dev-bin 2.35-0ubuntu3.1
- ubuntu/libc-devtools 2.35-0ubuntu3.1
- ubuntu/libc6-dev 2.35-0ubuntu3.1
- ubuntu/libc6 2.35-0ubuntu3.1
- ubuntu/libcairo-gobject2 1.16.0-5ubuntu2
- ubuntu/libcairo2 1.16.0-5ubuntu2
- ubuntu/libcap-ng0 0.7.9-2.2build3
- ubuntu/libcap2 1:2.44-1build3
- ubuntu/libcbor0.8 0.8.0-2ubuntu1
- ubuntu/libcc1-0 12.1.0-2ubuntu1~22.04
- ubuntu/libclone-perl 0.45-1build3
- ubuntu/libcolord2 1.4.6-1
- ubuntu/libcom-err2 1.46.5-2ubuntu1.1
- ubuntu/libcrypt-dev 1:4.4.27-1
- ubuntu/libcrypt1 1:4.4.27-1
- ubuntu/libcryptsetup12 2:2.4.3-1ubuntu1.1
- ubuntu/libctf-nobfd0 2.38-4ubuntu2.2
- ubuntu/libctf0 2.38-4ubuntu2.2
- ubuntu/libcups2 2.4.1op1-1ubuntu4.4
- ubuntu/libcurl3-gnutls 7.81.0-1ubuntu1.10
- ubuntu/libcurl4-openssl-dev 7.81.0-1ubuntu1.10
- ubuntu/libcurl4 7.81.0-1ubuntu1.10
- ubuntu/libdata-dump-perl 1.25-1
- ubuntu/libdatrie1 0.2.13-2
- ubuntu/libdb5.3 5.3.28 dfsg1-0.8ubuntu3
- ubuntu/libdbus-1-3 1.12.20-2ubuntu4.1
- ubuntu/libdconf1 0.40.0-3
- ubuntu/libdebconfclient0 0.261ubuntu1
- ubuntu/libdeflate0 1.10-2
- ubuntu/libdevmapper1.02.1 2:1.02.175-2.1ubuntu4
- ubuntu/libdpkg-perl 1.21.1ubuntu2.2
- ubuntu/libdrm-amdgpu1 2.4.113-2~ubuntu0.22.04.1
- ubuntu/libdrm-common 2.4.113-2~ubuntu0.22.04.1
- ubuntu/libdrm-intel1 2.4.113-2~ubuntu0.22.04.1
- ubuntu/libdrm-nouveau2 2.4.113-2~ubuntu0.22.04.1
- ubuntu/libdrm-radeon1 2.4.113-2~ubuntu0.22.04.1
- ubuntu/libdrm2 2.4.113-2~ubuntu0.22.04.1
- ubuntu/libedit2 3.1-20210910-1build1
- ubuntu/libelf1 0.186-1build1
- ubuntu/libencode-locale-perl 1.05-1.1
- ubuntu/libepoxy0 1.5.10-1
- ubuntu/liberror-perl 0.17029-1
- ubuntu/libexpat1 2.4.7-1ubuntu0.2
- ubuntu/libext2fs2 1.46.5-2ubuntu1.1
- ubuntu/libfakeroot 1.28-1ubuntu1
- ubuntu/libffi8 3.4.2-4
- ubuntu/libfido2-1 1.10.0-1
- ubuntu/libfile-basedir-perl 0.09-1
- ubuntu/libfile-desktopentry-perl 0.22-2
- ubuntu/libfile-fcntllock-perl 0.22-3build7
- ubuntu/libfile-listing-perl 6.14-1
- ubuntu/libfile-mimeinfo-perl 0.31-1
- ubuntu/libfont-afm-perl 1.20-3
- ubuntu/libfontconfig1 2.13.1-4.2ubuntu5
- ubuntu/libfontenc1 1:1.1.4-1build3
- ubuntu/libfreetype6 2.11.1 dfsg-1ubuntu0.2
- ubuntu/libfribidi0 1.0.8-2ubuntu3.1
- ubuntu/libgcc-11-dev 11.3.0-1ubuntu1~22.04.1
- ubuntu/libgcc-s1 12.1.0-2ubuntu1~22.04
- ubuntu/libgcrypt20 1.9.4-3ubuntu3
- ubuntu/libgd3 2.3.0-2ubuntu2
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- ubuntu/libgdbm6 1.23-1
- ubuntu/libgdk-pixbuf-2.0-0 2.42.8 dfsg-1ubuntu0.2
- ubuntu/libgdk-pixbuf2.0-bin 2.42.8 dfsg-1ubuntu0.2
- ubuntu/libgdk-pixbuf2.0-common 2.42.8 dfsg-1ubuntu0.2
- ubuntu/libgfortran-11-dev 11.3.0-1ubuntu1~22.04.1
- ubuntu/libgfortran5 12.1.0-2ubuntu1~22.04
- ubuntu/libgif7 5.1.9-2build2
- ubuntu/libgirepository-1.0-1 1.72.0-1
- ubuntu/libgl1-amber-dri 21.3.7-0ubuntu1
- ubuntu/libgl1-mesa-dri 22.2.5-0ubuntu0.1~22.04.3
- ubuntu/libgl1 1.4.0-1
- ubuntu/libglapi-mesa 22.2.5-0ubuntu0.1~22.04.3
- ubuntu/libglib2.0-0 2.72.4-0ubuntu2.2
- ubuntu/libglib2.0-data 2.72.4-0ubuntu2.2
- ubuntu/libglvnd0 1.4.0-1
- ubuntu/libglx-mesa0 22.2.5-0ubuntu0.1~22.04.3
- ubuntu/libglx0 1.4.0-1
- ubuntu/libgmp10 2:6.2.1 dfsg-3ubuntu1
- ubuntu/libgnutls30 3.7.3-4ubuntu1.2
- ubuntu/libgomp1 12.1.0-2ubuntu1~22.04
- ubuntu/libgpg-error0 1.43-3
- ubuntu/libgraphite2-3 1.3.14-1build2
- ubuntu/libgssapi-krb5-2 1.19.2-2ubuntu0.2
- ubuntu/libgtk-3-0 3.24.33-1ubuntu2
- ubuntu/libgtk-3-bin 3.24.33-1ubuntu2
- ubuntu/libgtk-3-common 3.24.33-1ubuntu2
- ubuntu/libgtkd-3-0 3.10.0-1ubuntu1
- ubuntu/libharfbuzz0b 2.7.4-1ubuntu3.1
- ubuntu/libhogweed6 3.7.3-1build2
- ubuntu/libhtml-form-perl 6.07-1
- ubuntu/libhtml-format-perl 2.12-1.1
- ubuntu/libhtml-parser-perl 3.76-1build2
- ubuntu/libhtml-tagset-perl 3.20-4
- ubuntu/libhtml-tree-perl 5.07-2
- ubuntu/libhttp-cookies-perl 6.10-1
- ubuntu/libhttp-daemon-perl 6.13-1ubuntu0.1
- ubuntu/libhttp-date-perl 6.05-1
- ubuntu/libhttp-message-perl 6.36-1
- ubuntu/libhttp-negotiate-perl 6.01-1
- ubuntu/libice-dev 2:1.0.10-1build2
- ubuntu/libice6 2:1.0.10-1build2
- ubuntu/libicu-dev 70.1-2
- ubuntu/libicu70 70.1-2
- ubuntu/libidn2-0 2.3.2-2build1
- ubuntu/libio-html-perl 1.004-2
- ubuntu/libio-socket-ssl-perl 2.074-2
- ubuntu/libio-stringy-perl 2.111-3
- ubuntu/libip4tc2 1.8.7-1ubuntu5.1
- ubuntu/libipc-system-simple-perl 1.30-1
- ubuntu/libisl23 0.24-2build1
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- ubuntu/libk5crypto3 1.19.2-2ubuntu0.2
- ubuntu/libkeyutils1 1.6.1-2ubuntu3
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- ubuntu/liblapack-dev 3.10.0-2ubuntu1
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- org.tukaani.xz:xz 1.8
- org.xerial.snappy:snappy-java 1.1.8.4
- org.yaml:snakeyaml 1.28
- picard:picard 2.27.5
- software.amazon.ion:ion-java 1.0.2
- spring-aop:spring-aop 6.0.9
- spring-context:spring-context 6.0.9
- testng:testng 6.14.3
- tomlj:tomlj 1.0.0
- trove4j:trove4j 1.0.20181211
- PyGObject 3.42.1
- dbus-python 1.2.18