koki/velocytor : 20221015

Latest release: almost 4 years ago - 151 downloads - 1,452 dependencies

JSON

Dependencies

@PKGNAME@ @PKGVERSION@
@PKGNAME@ @VERSION@
AnnotationDbi 1.58.0
AnnotationFilter 1.20.0
AnnotationHub 3.4.0
BH 1.78.0-0
Biobase 2.56.0
BiocFileCache 2.4.0
BiocGenerics 0.42.0
BiocIO 1.6.0
BiocManager 1.30.18
BiocNeighbors 1.14.0
BiocParallel 1.30.4
BiocSingular 1.12.0
BiocVersion 3.15.2
Biostrings 2.64.1
DBI 1.1.3
DT 0.25
DelayedArray 0.22.0
DelayedMatrixStats 1.18.2
ExperimentHub 2.4.0
FNN 1.1.3.1
Formula 1.2-4
GenomeInfoDb 1.32.4
GenomeInfoDbData 1.2.8
GenomicAlignments 1.32.1
GenomicFeatures 1.48.4
GenomicRanges 1.48.0
IRanges 2.30.1
KEGGREST 1.36.3
KernSmooth 2.23-20
MASS 7.3-58.1
Matrix 1.5-1
MatrixGenerics 1.8.1
ProtGenerics 1.28.0
R.methodsS3 1.8.2
R.oo 1.25.0
R.utils 2.12.0
R6 2.5.1
RANN 2.6.1
RColorBrewer 1.1-3
RCurl 1.98-1.9
ROCR 1.0-11
RSQLite 2.2.18
Rcpp 1.0.9
RcppAnnoy 0.0.19
RcppArmadillo 0.11.4.0.1
RcppEigen 0.3.3.9.2
RcppHNSW 0.4.1
RcppML 0.3.7
RcppProgress 0.4.2
RcppProgressArmadillo 0.2
RcppProgressETA 0.1
RcppProgressExample 0.2
RcppTOML 0.1.7
Rhtslib 1.28.0
Rsamtools 2.12.0
Rtsne 0.16
S4Vectors 0.34.0
ScaledMatrix 1.4.1
Seurat 4.2.0
SeuratDisk 0.0.0.9020
SeuratObject 4.1.2
SeuratWrappers 0.3.0
SingleCellExperiment 1.18.1
SummarizedExperiment 1.26.1
XML 3.99-0.11
XVector 0.36.0
abind 1.4-5
askpass 1.1
assertthat 0.2.1
backports 1.4.1
base64enc 0.1-3
base 4.2.1
basilisk.utils 1.8.0
basilisk 1.8.1
beachmat 2.12.0
beachtest 1.0.0
beeswarm 0.4.0
biomaRt 2.52.0
bit64 4.0.5
bit 4.0.4
bitops 1.0-7
blob 1.2.3
bluster 1.6.0
boot 1.3-28
brew 1.0-8
brio 1.1.3
bslib 0.4.0
caTools 1.18.2
cachem 1.0.6
callr 3.7.2
checkmate 2.1.0
class 7.3-20
cli 3.4.1
clipr 0.8.0
cluster 2.1.4
codetools 0.2-18
colorspace 2.0-3
commonmark 1.8.0
compiler 4.2.1
cowplot 1.1.1
cpp11 0.4.3
crayon 1.5.2
credentials 1.3.2
crosstalk 1.2.0
curl 4.3.3
data.table 1.14.2
datasets 4.2.1
dbplyr 2.2.1
deldir 1.0-6
desc 1.4.2
devtools 2.4.5
diffobj 0.3.5
digest 0.6.29
dir.expiry 1.4.0
docopt 0.7.1
downlit 0.4.2
dplyr 1.0.10
dqrng 0.3.0
edgeR 3.38.4
ellipsis 0.3.2
ensembldb 2.20.2
evaluate 0.17
fansi 1.0.3
farver 2.1.1
fastmap 1.1.0
filelock 1.0.2
fitdistrplus 1.1-8
fontawesome 0.3.0
foreign 0.8-83
formatR 1.12
formula.tools 1.7.1
fs 1.5.2
futile.logger 1.4.3
futile.options 1.0.1
future.apply 1.9.1
future 1.28.0
generics 0.1.3
gert 1.9.1
ggbeeswarm 0.6.0
ggplot2 3.3.6
ggrepel 0.9.1
ggridges 0.5.4
gh 1.3.1
gitcreds 0.1.2
globals 0.16.1
glue 1.6.2
goftest 1.2-3
gplots 3.1.3
grDevices 4.2.1
graphics 4.2.1
grid 4.2.1
gridExtra 2.3
gtable 0.3.1
gtools 3.9.3
hdf5r 1.3.7
here 1.0.1
highr 0.9
hms 1.1.2
htmltools 0.5.3
htmlwidgets 1.5.4
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jsonlite 1.8.2
knitr 1.40
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lambda.r 1.2.4
later 1.3.0
lattice 0.20-45
lazyeval 0.2.2
leiden 0.4.3
lifecycle 1.0.3
limma 3.52.4
listenv 0.8.0
littler 0.3.16
lmtest 0.9-40
locfit 1.5-9.6
loomR 0.2.1.9000
lubridate 1.8.0
magrittr 2.0.3
matrixStats 0.62.0
memoise 2.0.1
metR 0.13.0
metapod 1.4.0
methods 4.2.1
mgcv 1.8-40
mime 0.12
miniUI 0.1.1.1
morebeach 1.0.0
morebeachtests 1.0.0
munsell 0.5.0
nlme 3.1-160
nnet 7.3-18
openssl 2.0.3
operator.tools 1.6.3
org.testing.db 0.1
parallel 4.2.1
parallelly 1.32.1
patchwork 1.1.2
pbapply 1.5-0
pcaMethods 1.88.0
pillar 1.8.1
pkgbuild 1.3.1
pkgconfig 2.0.3
pkgdown 2.0.6
pkgload 1.3.0
plogr 0.2.0
plotly 4.10.0
plyr 1.8.7
png 0.1-7
polyclip 1.10-0
praise 1.0.0
prettyunits 1.1.1
processx 3.7.0
profvis 0.3.7
progress 1.2.2
progressr 0.11.0
promises 1.2.0.1
ps 1.7.1
purrr 0.3.5
ragg 1.2.3
rappdirs 0.3.3
rcmdcheck 1.4.0
rematch2 2.1.2
remotes 2.4.2
reshape2 1.4.4
restfulr 0.0.15
reticulate 1.26
rgeos 0.5-9
rjson 0.2.21
rlang 1.0.6
rmarkdown 2.17
roxygen2 7.2.1
rpart 4.1.16
rprojroot 2.0.3
rstudioapi 0.14
rsvd 1.0.5
rtracklayer 1.56.1
rversions 2.1.2
sass 0.4.2
scRNAseq 2.10.0
scales 1.2.1
scater 1.24.0
scattermore 0.8
scran 1.24.1
sctransform 0.3.5
scuttle 1.6.3
sessioninfo 1.2.2
shiny 1.7.2
sitmo 2.0.2
snow 0.4-4
son.of.basilisk 0.99.0
sourcetools 0.1.7
sp 1.5-0
sparseMatrixStats 1.8.0
spatial 7.3-15
spatstat.core 2.4-4
spatstat.data 2.2-0
spatstat.geom 2.4-0
spatstat.random 2.2-0
spatstat.sparse 2.1-1
spatstat.utils 2.3-1
splines 4.2.1
statmod 1.4.37
stats4 4.2.1
stats 4.2.1
stringi 1.7.8
stringr 1.4.1
survival 3.4-0
sys 3.4
systemfonts 1.0.4
tcltk 4.2.1
tensor 1.5
testRcppAttributePackage 1.0
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
testthat 3.1.5
textshaping 0.3.6
tibble 3.1.8
tidyr 1.2.1
tidyselect 1.2.0
tinytex 0.42
tools 4.2.1
translations 4.2.1
urlchecker 1.0.1
usethis 2.1.6
utf8 1.2.2
utils 4.2.1
uwot 0.1.14
vctrs 0.4.2
velociraptor 1.6.0
velocyto.R 0.6
vipor 0.4.5
viridis 0.6.2
viridisLite 0.4.1
waldo 0.4.0
whisker 0.4
withr 2.5.0
xfun 0.33
xml2 1.3.3
xopen 1.0.0
xtable 1.8-4
yaml 2.3.5
zellkonverter 1.6.5
zip 2.2.1
zlibbioc 1.42.0
zoo 1.8-11

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ubuntu/zip 3.0-11build1
ubuntu/zlib1g-dev 1:1.2.11.dfsg-2ubuntu1.3
ubuntu/zlib1g 1:1.2.11.dfsg-2ubuntu1.3

bash 5.0.17

github.com/evanw/esbuild v0.0.0-20220511215310-7abb7d8496d4
golang.org/x/sys v0.0.0-20210908233432-aa78b53d3365
stdlib 1.18.1

com.ibm.icu.base:base 4.4
com.ibm.icu.charset:icu4j-charset 60.2
com.ibm.icu.localespi:icu4j-localespi 60.2
com.ibm.icu:icu4j 60.2
com.ibm.icu:icu 4.4
jrt-fs:jrt-fs 11.0.16
org.debian.security.UpdateCertificates:ca-certificates-java *

bootstrap-accessibility-plugin 1.0.6
bootstrap-colorpicker 3.4.0
bootstrap-sass 3.4.1
bootstrap 4.6.0
bootstrap 5.1.3
bootswatch 3.4.1
bootswatch 4.6.0
bootswatch 5.1.3

PyYAML 6.0
argparse 1.2.1
joblib 1.1.0
mypy 0.931
numpy 1.23.1
pandas 1.4.3
pip 20.0.2
pydata-sphinx-theme 0.9.0
python-dateutil 2.8.2
pytz 2022.1
scikit-learn 1.1.2
scipy 1.9.0
setuptools 44.0.0
setuptools 45.2.0
six 1.16.0
threadpoolctl 3.1.0
wheel 0.34.2
wsgiref 0.1.2

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koki/velocytor : 20221015

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