koki/biocdev : 20230818
Latest release: almost 3 years ago - 382 downloads - 1,504 dependencies
JSONDependencies
- @PKGNAME@ @PKGVERSION@
- @PKGNAME@ @VERSION@
- AHLRBaseDbs 1.6.0
- AHMeSHDbs 1.6.0
- AHPubMedDbs 1.6.0
- AnnotationDbi 1.63.2
- AnnotationForge 1.43.3
- AnnotationHub 3.9.1
- AnnotationHubData 1.31.0
- BH 1.81.0-1
- Biobase 2.61.0
- BiocCheck 1.37.8
- BiocFileCache 2.9.1
- BiocGenerics 0.47.0
- BiocIO 1.11.0
- BiocManager 1.30.22
- BiocParallel 1.35.3
- BiocSingular 1.17.1
- BiocStyle 2.29.1
- BiocVersion 3.18.0
- Biostrings 2.69.2
- Category 2.67.0
- DBI 1.1.3
- DOSE 3.27.2
- DT 0.28
- DelayedArray 0.27.10
- DelayedRandomArray 1.9.1
- DelayedTensor 1.7.0
- FNN 1.1.3.2
- GO.db 3.17.0
- GOSemSim 2.27.2
- GOstats 2.67.1
- GSEABase 1.63.0
- GenomeInfoDb 1.37.2
- GenomeInfoDbData 1.2.10
- GenomicAlignments 1.37.0
- GenomicFeatures 1.53.1
- GenomicRanges 1.53.1
- HDF5Array 1.29.3
- HDO.db 0.99.1
- HPO.db 0.99.2
- Homo.sapiens 1.3.1
- IRanges 2.35.2
- KEGGREST 1.41.0
- MPO.db 0.99.7
- KernSmooth 2.23-22
- MASS 7.3-60
- Matrix 1.5-4.1
- Matrix 1.6-1
- MatrixGenerics 1.13.1
- MeSHDbi 1.37.0
- OrganismDbi 1.43.0
- R6 2.5.1
- RANN 2.6.1
- RBGL 1.77.1
- RColorBrewer 1.1-3
- RCurl 1.98-1.12
- ROCR 1.0-11
- RSQLite 2.3.1
- RUnit 0.4.32
- Rcpp 1.0.11
- RcppAnnoy 0.0.21
- RcppArmadillo 0.12.6.1.0
- RcppEigen 0.3.3.9.3
- RcppProgress 0.4.2
- RcppProgressArmadillo 0.2
- RcppProgressETA 0.1
- RcppProgressExample 0.2
- RcppTOML 0.2.2
- ReactomePA 1.45.0
- Rgraphviz 2.45.0
- Rhdf5lib 1.23.0
- Rhtslib 2.3.0
- Rsamtools 2.17.0
- Rtsne 0.16
- S4Arrays 1.1.5
- S4Vectors 0.39.1
- ScaledMatrix 1.9.1
- Seurat 4.3.0.1
- SeuratObject 4.1.3
- SingleCellExperiment 1.23.0
- SparseArray 1.1.11
- SummarizedExperiment 1.31.1
- TSP 1.2-4
- TxDb.Hsapiens.UCSC.hg19.knownGene 3.2.2
- V8 4.3.3
- VennDiagram 1.7.3
- XML 3.99-0.14
- XVector 0.41.1
- abind 1.4-5
- annotate 1.79.0
- ape 5.7-1
- aplot 0.2.0
- askpass 1.1
- assertthat 0.2.1
- babelgene 22.9
- backports 1.4.1
- base64enc 0.1-3
- base 4.3.1
- beachmat 2.17.15
- beachtest 1.0.0
- biocViews 1.69.1
- biomaRt 2.57.1
- bit64 4.0.5
- bit 4.0.5
- bitops 1.0-7
- blob 1.2.4
- bookdown 0.35
- boot 1.3-28.1
- brew 1.0-8
- brio 1.1.3
- bslib 0.5.1
- ca 0.71.1
- caTools 1.18.2
- cachem 1.0.8
- callr 3.7.3
- ccTensor 1.0.2
- checkmate 2.2.0
- class 7.3-22
- classInt 0.4-9
- cli 3.6.1
- clipr 0.8.0
- cluster 2.1.4
- codetools 0.2-19
- colorspace 2.1-0
- commonmark 1.9.0
- compiler 4.3.1
- concaveman 1.1.0
- cowplot 1.1.1
- cpp11 0.4.6
- crayon 1.5.2
- credentials 1.3.2
- crosstalk 1.2.0
- curl 5.0.2
- data.table 1.14.8
- datasets 4.3.1
- dbplyr 2.3.3
- deldir 1.0-9
- dendextend 1.17.1
- desc 1.4.2
- devtools 2.4.5
- diffobj 0.3.5
- digest 0.6.33
- docopt 0.7.1
- dotCall64 1.0-2
- downlit 0.4.3
- dplyr 1.1.2
- dqrng 0.3.0
- e1071 1.7-13
- egg 0.4.5
- einsum 0.1.0
- ellipsis 0.3.2
- enrichplot 1.21.1
- entropy 1.3.1
- evaluate 0.21
- fansi 1.0.4
- farver 2.1.1
- fastmap 1.1.1
- fastmatch 1.1-3
- fdrtool 1.2.17
- fgsea 1.27.1
- fields 15.2
- filelock 1.0.2
- fitdistrplus 1.1-11
- fontawesome 0.5.1
- foreach 1.5.2
- foreign 0.8-84
- formatR 1.14
- fs 1.6.3
- futile.logger 1.4.3
- futile.options 1.0.1
- future.apply 1.11.0
- future 1.33.0
- gclus 1.3.2
- genefilter 1.83.1
- generics 0.1.3
- gert 1.9.3
- ggforce 0.4.1
- ggfun 0.1.2
- ggnewscale 0.4.9
- ggplot2 3.4.3
- ggplotify 0.1.2
- ggraph 2.1.0
- ggrepel 0.9.3
- ggridges 0.5.4
- ggtree 3.9.1
- gh 1.4.0
- gitcreds 0.1.2
- globals 0.16.2
- glue 1.6.2
- goftest 1.2-3
- gplots 3.1.3
- grDevices 4.3.1
- graph 1.79.0
- graphics 4.3.1
- graphite 1.47.0
- graphlayouts 1.0.0
- grid 4.3.1
- gridExtra 2.3
- gridGraphics 0.5-1
- gson 0.1.0
- gtable 0.3.3
- gtools 3.9.4
- heatmaply 1.4.2
- here 1.0.1
- hexbin 1.28.3
- highr 0.10
- hms 1.1.3
- htmltools 0.5.6
- htmlwidgets 1.6.2
- httpuv 1.6.11
- httr2 0.2.3
- httr 1.4.7
- ica 1.0-3
- igraph 1.5.1
- ini 0.3.1
- interactiveDisplayBase 1.39.0
- irlba 2.3.5.1
- isoband 0.2.7
- iterators 1.0.14
- jquerylib 0.1.4
- jsonlite 1.8.7
- knitr 1.43
- labeling 0.4.2
- lambda.r 1.2.4
- later 1.3.1
- lattice 0.21-8
- lazyeval 0.2.2
- leiden 0.4.3
- lifecycle 1.0.3
- listenv 0.9.0
- littler 0.3.18
- lmtest 0.9-40
- magrittr 2.0.3
- maps 3.4.1
- markdown 1.7
- mathjaxr 1.6-0
- matrixStats 1.0.0
- memoise 2.0.1
- meshr 2.7.0
- methods 4.3.1
- mgcv 1.9-0
- mime 0.12
- miniUI 0.1.1.1
- misc3d 0.9-1
- morebeach 1.0.0
- morebeachtests 1.0.0
- msigdbr 7.5.1
- munsell 0.5.0
- nlme 3.1-163
- nnTensor 1.2.0
- nnet 7.3-19
- openssl 2.1.0
- org.Hs.eg.db 3.17.0
- org.testing.db 0.1
- outliers 0.15
- parallel 4.3.1
- parallelly 1.36.0
- patchwork 1.1.3
- pbapply 1.7-2
- permute 0.9-7
- pillar 1.9.0
- pkgbuild 1.4.2
- pkgconfig 2.0.3
- pkgdown 2.0.7
- pkgload 1.3.2.1
- plogr 0.2.0
- plot3D 1.4
- plotly 4.10.2
- plotrix 3.8-2
- plyr 1.8.8
- png 0.1-8
- polyclip 1.10-4
- praise 1.0.0
- prettyunits 1.1.1
- processx 3.8.2
- profvis 0.3.8
- progress 1.2.2
- progressr 0.14.0
- promises 1.2.1
- proxy 0.4-27
- ps 1.7.5
- purrr 1.0.2
- qap 0.1-2
- qvalue 2.33.0
- rTensor 1.4.8
- ragg 1.2.5
- rappdirs 0.3.3
- rcmdcheck 1.4.0
- reactome.db 1.84.0
- registry 0.5-1
- rematch2 2.1.2
- remotes 2.4.2.1
- reshape2 1.4.4
- restfulr 0.0.15
- reticulate 1.31
- rhdf5 2.45.1
- rhdf5filters 1.13.5
- rjson 0.2.21
- rlang 1.1.1
- rmarkdown 2.24
- roxygen2 7.2.3
- rpart 4.1.19
- rprojroot 2.0.3
- rstudioapi 0.15.0
- rsvd 1.0.5
- rtracklayer 1.61.1
- rversions 2.1.2
- s2 1.1.4
- sass 0.4.7
- scTGIF 1.15.0
- scTensor 2.11.0
- scales 1.2.1
- scattermore 1.2
- scatterpie 0.2.1
- schex 1.15.0
- sctransform 0.3.5
- seqnames.db @VERSION@
- seriation 1.5.1
- sessioninfo 1.2.2
- sf 1.0-14
- shadowtext 0.1.2
- shiny 1.7.5
- sitmo 2.0.2
- snow 0.4-4
- sourcetools 0.1.7-1
- sp 2.0-0
- spam 2.9-1
- spatial 7.3-17
- spatstat.data 3.0-1
- spatstat.explore 3.2-1
- spatstat.geom 3.2-4
- spatstat.random 3.1-5
- spatstat.sparse 3.0-2
- spatstat.utils 3.0-3
- splines 4.3.1
- stats4 4.3.1
- stats 4.3.1
- stringdist 0.9.10
- stringi 1.7.12
- stringr 1.5.0
- survival 3.5-7
- sys 3.4.2
- systemfonts 1.0.4
- tagcloud 0.6
- tcltk 4.3.1
- tensor 1.5
- testRcppAttributePackage 1.0
- testRcppClass 0.1
- testRcppInterfaceExporter 0.1.0
- testRcppInterfaceUser 0.1.0
- testRcppModule 0.1
- testRcppPackage 0.1.0
- testpkg0 0.1
- testpkg1 0.1
- testthat 3.1.10
- textshaping 0.3.6
- tibble 3.2.1
- tidygraph 1.2.3
- tidyr 1.3.0
- tidyselect 1.2.0
- tidytree 0.4.5
- tinytex 0.46
- tools 4.3.1
- translations 4.3.1
- treeio 1.25.3
- tweenr 2.0.2
- units 0.8-3
- urlchecker 1.0.1
- usethis 2.2.2
- utf8 1.2.3
- utils 4.3.1
- uwot 0.1.16
- vctrs 0.6.3
- vegan 2.6-4
- viridis 0.6.4
- viridisLite 0.4.2
- visNetwork 2.1.2
- waldo 0.5.1
- webshot 0.5.5
- whisker 0.4.1
- withr 2.5.0
- wk 0.7.3
- xfun 0.40
- xml2 1.3.5
- xopen 1.0.0
- xtable 1.8-4
- yaml 2.3.7
- yulab.utils 0.0.7
- zip 2.3.0
- zlibbioc 1.47.0
- zoo 1.8-12
- ubuntu/adduser 3.118ubuntu5
- ubuntu/adwaita-icon-theme 41.0-1ubuntu1
- ubuntu/apt-utils 2.4.10
- ubuntu/apt 2.4.10
- ubuntu/autoconf 2.71-2
- ubuntu/automake 1:1.16.5-1.3
- ubuntu/autotools-dev 20220109.1
- ubuntu/base-files 12ubuntu4.3
- ubuntu/base-passwd 3.5.52build1
- ubuntu/bash-completion 1:2.11-5ubuntu1
- ubuntu/bash 5.1-6ubuntu1
- ubuntu/biber 2.17-2
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- ubuntu/binutils-x86-64-linux-gnu 2.38-4ubuntu2.3
- ubuntu/binutils 2.38-4ubuntu2.3
- ubuntu/bsdutils 1:2.37.2-4ubuntu3
- ubuntu/byacc 1:2.0.20220114-1
- ubuntu/bzip2 1.0.8-5build1
- ubuntu/ca-certificates-java 20190909ubuntu1.2
- ubuntu/ca-certificates 20230311ubuntu0.22.04.1
- ubuntu/cmake-data 3.22.1-1ubuntu1.22.04.1
- ubuntu/cmake 3.22.1-1ubuntu1.22.04.1
- ubuntu/coinor-libcgl-dev 0.60.3 repack1-3
- ubuntu/coinor-libcgl1 0.60.3 repack1-3
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- ubuntu/coinor-libsymphony-doc 5.6.17 dfsg-1
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