Ecosyste.ms: Docker

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kcapd/wings-genomics : latest

WINGS workflow system with software for genomics operations.

Latest release: about 4 years ago - 103 downloads - 1,468 dependencies

Dependencies

@PKGNAME@ @PKGVERSION@
@PKGNAME@ @VERSION@
ALL 1.16.0
AnnotationDbi 1.36.2
BH 1.69.0-1
BSgenome 1.42.0
Biobase 2.34.0
BiocGenerics 0.20.0
BiocInstaller 1.24.0
BiocParallel 1.8.2
Biostrings 2.42.1
ComplexHeatmap 1.12.0
ConsensusClusterPlus 1.38.0
DBI 1.0.0
EBSeq 1.18.0
Formula 1.2-3
GenomeInfoDb 1.10.3
GenomicAlignments 1.10.1
GenomicFeatures 1.26.4
GenomicRanges 1.26.4
GetoptLong 0.1.7
GlobalOptions 0.1.0
Hmisc 4.2-0
IRanges 2.8.2
KEGGREST 1.14.1
KernSmooth 2.23-15
MASS 7.3-45
Matrix 1.2-7.1
PerformanceAnalytics 1.4.4000
R6 2.4.0
RColorBrewer 1.1-2
RCurl 1.95-4.12
RSQLite 2.1.1
Rcpp 1.0.1
Rsamtools 1.26.2
Rsubread 1.24.2
S4Vectors 0.12.2
SummarizedExperiment 1.4.0
UpSetR 1.4.0
VariantAnnotation 1.20.3
XML 3.98-1.19
XVector 0.14.1
acepack 1.4.1
askpass 1.1
assertthat 0.2.1
backports 1.1.4
base64enc 0.1-3
base 3.3.3
bibtex 0.4.2
biomaRt 2.30.0
bit64 0.9-7
bit 1.1-14
bitops 1.0-6
blob 1.1.1
blockmodeling 0.3.1
boot 1.3-18
caTools 1.17.1.1
callr 3.2.0
checkmate 1.9.1
circlize 0.4.6
class 7.3-14
cli 1.1.0
clipr 0.6.0
clisymbols 1.2.0
cluster 2.0.5
codetools 0.2-15
codetools 0.2-16
colorspace 1.4-1
compiler 3.3.3
corrplot 0.84
crayon 1.3.4
curl 3.3
customProDB 1.14.1
data.table 1.12.2
datasets 3.3.3
dendextend 1.14.0
desc 1.2.0
devtools 2.0.2
digest 0.6.18
doParallel 1.0.11
doRNG 1.7.1
dplyr 1.0.2
easyGgplot2 1.0.0.9000
ellipsis 0.3.1
evaluate 0.13
fansi 0.4.0
foreach 1.4.4
foreign 0.8-67
formatR 1.6
fs 1.2.7
futile.logger 1.4.3
futile.options 1.0.1
gage 2.24.0
gdata 2.18.0
generics 0.0.2
ggplot2 3.1.1
gh 1.0.1
git2r 0.25.2
glue 1.4.2
gplots 3.0.1
grDevices 3.3.3
graph 1.52.0
graphics 3.3.3
grid 3.3.3
gridExtra 2.3
gtable 0.3.0
gtools 3.8.1
highr 0.8
htmlTable 1.13.1
htmltools 0.3.6
htmlwidgets 1.3
httr 1.4.0
ini 0.3.1
iterators 1.0.10
jsonlite 1.6
knitr 1.22
labeling 0.3
lambda.r 1.2.3
lattice 0.20-34
latticeExtra 0.6-28
lazyeval 0.2.2
lifecycle 0.2.0
limma 3.30.13
linkXTS 1.0
magrittr 1.5
markdown 0.9
memoise 1.1.0
methods 3.3.3
mgcv 1.8-16
mime 0.6
mnormt 1.5-5
munsell 0.5.0
nlme 3.1-129
nnet 7.3-12
openssl 1.3
org.Hs.eg.db 3.4.0
org.testing.db 0.1
pamr 1.56.1
parallel 3.3.3
pillar 1.4.6
pkgbuild 1.0.3
pkgconfig 2.0.2
pkgload 1.0.2
pkgmaker 0.27
plogr 0.2.0
plyr 1.8.4
png 0.1-7
praise 1.0.0
prettyunits 1.0.2
processx 3.3.0
ps 1.3.0
psych 1.8.12
purrr 0.3.2
rcmdcheck 1.3.2
registry 0.5
remotes 2.0.4
reshape2 1.4.4
reshape 0.8.8
rjson 0.2.20
rlang 0.4.8
rngtools 1.3.1
rpart 4.1-10
rprojroot 1.3-2
rstudioapi 0.10
rtracklayer 1.34.2
scales 1.0.0
sessioninfo 1.1.1
shape 1.4.4
snow 0.4-3
spatial 7.3-11
splines 3.3.3
spp 1.0
stats4 3.3.3
stats 3.3.3
stringi 1.4.3
stringr 1.4.0
survival 2.40-1
sys 3.2
tcltk 3.3.3
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
testthat 2.0.0
tibble 3.0.4
tidyselect 1.1.0
tools 3.3.3
translations 3.3.3
usethis 1.5.0
utf8 1.1.4
utils 3.3.3
vctrs 0.3.4
viridis 0.5.1
viridisLite 0.3.0
whisker 0.3-2
withr 2.1.2
xfun 0.6
xopen 1.0.0
xtable 1.8-3
xts 0.9.874
yaml 2.2.0
zlibbioc 1.20.0
zoo 1.8-6

subprocess32 3.5.4
wsgiref 0.1.2
Cython 0.29.7
PyGObject 3.22.0
RSeQC 2.6.6
argparse 1.2.1
backports.functools-lru-cache 1.6.1
bx-python 0.8.2
cycler 0.10.0
kiwisolver 1.1.0
matplotlib-venn 0.11.5
matplotlib 2.2.5
numpy 1.12.1
pandas 0.24.2
pip 9.0.1
pycurl 7.43.0
pyparsing 2.4.7
pysam 0.15.2
python-apt 1.4.0.b3
python-dateutil 2.8.1
pytz 2020.1
scipy 1.2.3
setuptools 33.1.1
six 1.12.0