Ecosyste.ms: Docker

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jpsmith5/peppro : latest

Latest release: almost 2 years ago - 29 downloads - 1,163 dependencies

Dependencies

aho-corasick 0.5.3
aho-corasick 0.6.4
aho-corasick 0.6.9
ansi_term 0.11.0
assert_cmd 0.4.0
atty 0.2.14
bincode 0.5.9
bitflags 0.9.1
bitflags 1.0.1
bitflags 1.0.4
byteorder 0.5.3
cbindgen 0.13.2
cfg-if 0.1.6
cfg-if 1.0.0
clap 2.33.3
custom_derive 0.1.7
darling 0.12.2
darling_core 0.12.2
darling_macro 0.12.2
difference 2.0.0
docopt 0.6.86
docopt 0.8.1
either 1.1.0
escargot 0.2.0
flate2 0.2.18
float-cmp 0.4.0
fnv 1.0.7
fqdedup 1.0.0
fs_extra 1.1.0
fuchsia-zircon-sys 0.3.3
fuchsia-zircon 0.3.3
gcc 0.3.45
getrandom 0.1.16
hermit-abi 0.1.18
ident_case 1.0.1
idna 0.1.2
ieee754 0.2.2
itertools 0.6.0
itoa 0.4.3
kernel32-sys 0.2.2
lazy_static 0.2.11
lazy_static 0.2.6
lazy_static 1.0.0
lazy_static 1.2.0
libc 0.2.34
libc 0.2.92
log 0.4.14
matches 0.1.6
memchr 0.1.11
memchr 2.0.1
memchr 2.1.1
miniz-sys 0.1.9
newtype_derive 0.1.6
num-traits 0.1.37
num-traits 0.2.6
patricia_tree 0.1.1
percent-encoding 1.0.0
ppv-lite86 0.2.10
predicates 0.5.2
proc-macro2 1.0.26
profile 1.0.0
quick-error 1.2.0
quote 0.3.15
quote 1.0.9
rand 0.3.22
rand 0.4.3
rand 0.7.3
rand_chacha 0.2.2
rand_core 0.5.1
rand_hc 0.2.0
redox_syscall 0.1.40
regex-syntax 0.3.9
regex-syntax 0.4.1
regex-syntax 0.6.3
regex 0.1.80
regex 0.2.3
regex 1.0.6
remove_dir_all 0.5.1
rust-htslib 0.12.1
rustc-serialize 0.3.23
rustc_version 0.1.7
ryu 0.2.7
semver 0.1.20
seqOutBias 1.3.0
serde 0.7.15
serde 1.0.125
serde 1.0.25
serde_derive 1.0.125
serde_derive 1.0.25
serde_derive_internals 0.18.1
serde_json 1.0.33
strsim 0.10.0
strsim 0.5.2
strsim 0.6.0
strsim 0.8.0
syn 0.11.11
syn 1.0.68
synom 0.11.3
tempdir 0.3.7
tempfile 2.2.0
tempfile 3.1.0
textwrap 0.11.0
thread-id 2.0.0
thread_local 0.2.7
thread_local 0.3.5
thread_local 0.3.6
toml 0.5.8
ucd-util 0.1.3
unicode-bidi 0.3.4
unicode-normalization 0.1.5
unicode-width 0.1.8
unicode-xid 0.0.4
unicode-xid 0.2.1
unreachable 1.0.0
url 1.7.2
utf8-ranges 0.1.3
utf8-ranges 1.0.0
utf8-ranges 1.0.2
vec_map 0.8.2
version_check 0.1.5
void 1.0.2
wasi 0.9.0 wasi-snapshot-preview1
winapi-build 0.1.1
winapi-i686-pc-windows-gnu 0.4.0
winapi-x86_64-pc-windows-gnu 0.4.0
winapi 0.2.8
winapi 0.3.6

@PKGNAME@ @PKGVERSION@
@PKGNAME@ @VERSION@
AnnotationDbi 1.60.0
AnnotationFilter 1.22.0
AnnotationHub 3.6.0
BH 1.78.0-0
BSgenome 1.66.1
Biobase 2.58.0
BiocFileCache 2.6.0
BiocGenerics 0.44.0
BiocIO 1.8.0
BiocManager 1.30.19
BiocParallel 1.32.4
BiocVersion 3.16.0
Biostrings 2.66.0
DBI 1.1.3
DT 0.26
DelayedArray 0.24.0
ExperimentHub 2.6.0
GenomeInfoDb 1.34.4
GenomeInfoDbData 1.2.9
GenomicAlignments 1.34.0
GenomicDistributions 1.6.0
GenomicDistributionsData 1.6.0
GenomicFeatures 1.50.2
GenomicRanges 1.50.1
IRanges 2.32.0
KEGGREST 1.38.0
KernSmooth 2.23-20
MASS 7.3-58
Matrix 1.5-1
MatrixGenerics 1.10.0
PEPPROr 0.0.2.0000
ProtGenerics 1.30.0
R.methodsS3 1.8.2
R.oo 1.25.0
R.utils 2.12.2
R6 2.5.1
RColorBrewer 1.1-3
RCurl 1.98-1.9
RSQLite 2.2.19
Rcpp 1.0.9
Rhtslib 2.0.0
Rsamtools 2.14.0
S4Vectors 0.36.1
SummarizedExperiment 1.28.0
XML 3.99-0.13
XVector 0.38.0
argparser 0.7.1
askpass 1.1
assertthat 0.2.1
backports 1.4.1
base64enc 0.1-3
base 4.2.2
biomaRt 2.54.0
bit64 4.0.5
bit 4.0.5
bitops 1.0-7
blob 1.2.3
boot 1.3-28
brew 1.0-8
brio 1.1.3
broom 1.0.1
bslib 0.4.1
caTools 1.18.2
cachem 1.0.6
callr 3.7.3
class 7.3-20
cli 3.4.1
clipr 0.8.0
cluster 2.1.4
codetools 0.2-18
colorspace 2.0-3
commonmark 1.8.1
compiler 4.2.2
cpp11 0.4.3
crayon 1.5.2
credentials 1.3.2
crosstalk 1.2.0
curl 4.3.3
data.table 1.14.6
datasets 4.2.2
dbplyr 2.2.1
desc 1.4.2
devtools 2.4.5
diffobj 0.3.5
digest 0.6.30
downlit 0.4.2
dplyr 1.0.10
ellipsis 0.3.2
ensembldb 2.22.0
evaluate 0.18
fansi 1.0.3
farver 2.1.1
fastmap 1.1.0
filelock 1.0.2
fontawesome 0.4.0
foreign 0.8-82
formatR 1.12
fs 1.5.2
futile.logger 1.4.3
futile.options 1.0.1
generics 0.1.3
gert 1.9.2
ggplot2 3.4.0
ggrepel 0.9.2
gh 1.3.1
gitcreds 0.1.2
glue 1.6.2
gplots 3.1.3
grDevices 4.2.2
graphics 4.2.2
grid 4.2.2
gtable 0.3.1
gtools 3.9.4
highr 0.9
hms 1.1.2
htmltools 0.5.4
htmlwidgets 1.5.4
httpuv 1.6.6
httr 1.4.4
ini 0.3.1
interactiveDisplayBase 1.36.0
isoband 0.2.6
jquerylib 0.1.4
jsonlite 1.8.4
knitr 1.41
labeling 0.4.2
lambda.r 1.2.4
later 1.3.0
lattice 0.20-45
lazyeval 0.2.2
lifecycle 1.0.3
lobstr 1.1.2
magrittr 2.0.3
matrixStats 0.63.0
memoise 2.0.1
methods 4.2.2
mgcv 1.8-41
mime 0.12
miniUI 0.1.1.1
munsell 0.5.0
nlme 3.1-160
nnet 7.3-18
openssl 2.0.5
optigrab 0.9.2.1
org.testing.db 0.1
parallel 4.2.2
pepr 0.4.0
pillar 1.8.1
pkgbuild 1.4.0
pkgconfig 2.0.3
pkgdown 2.0.6
pkgload 1.3.2
plogr 0.2.0
plyr 1.8.8
png 0.1-8
praise 1.0.0
preseqR 4.0.0
prettyunits 1.1.1
processx 3.8.0
profvis 0.3.7
progress 1.2.2
promises 1.2.0.1
pryr 0.1.5
ps 1.7.2
purrr 0.3.5
ragg 1.2.4
rappdirs 0.3.3
rcmdcheck 1.4.0
rematch2 2.1.2
remotes 2.4.2
reshape2 1.4.4
restfulr 0.0.15
rjson 0.2.21
rlang 1.0.6
rmarkdown 2.18
roxygen2 7.2.3
rpart 4.1.19
rprojroot 2.0.3
rstudioapi 0.14
rtracklayer 1.58.0
rversions 2.1.2
sass 0.4.4
scales 1.2.1
sessioninfo 1.2.2
shiny 1.7.3
snow 0.4-4
sourcetools 0.1.7
spatial 7.3-15
splines 4.2.2
stats4 4.2.2
stats 4.2.2
stringi 1.7.8
stringr 1.5.0
survival 3.4-0
sys 3.4.1
systemfonts 1.0.4
tcltk 4.2.2
testRcppAttributePackage 1.0
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
testthat 3.1.5
textshaping 0.3.6
tibble 3.1.8
tidyr 1.2.1
tidyselect 1.2.0
tinytex 0.42
tools 4.2.2
translations 4.2.2
urlchecker 1.0.1
usethis 2.1.6
utf8 1.2.2
utils 4.2.2
vctrs 0.5.1
viridisLite 0.4.1
waldo 0.4.0
whisker 0.4.1
withr 2.5.0
xfun 0.35
xml2 1.3.3
xopen 1.0.0
xtable 1.8-4
yaml 2.3.6
zip 2.2.2
zlibbioc 1.44.0

bash 5.1.16
rust 1.65.0

Cython 0.29.32
Jinja2 3.1.2
Levenshtein 0.20.8
MarkupSafe 2.1.1
PyGObject 3.42.1
PyJWT 2.3.0
PyYAML 6.0
Pygments 2.13.0
SecretStorage 3.3.1
attmap 0.13.2
attrs 22.1.0
blinker 1.4
certifi 2022.12.7
charset-normalizer 2.1.1
codecov 2.1.12
colorama 0.4.6
commonmark 0.9.1
coverage 6.5.0
cryptography 3.4.8
cutadapt 4.1
cykhash 2.0.0
dbus-python 1.2.18
distlib 0.3.6
distro 1.7.0
dnaio 0.10.0
filelock 3.8.2
future 0.18.2
httplib2 0.20.2
idna 3.4
importlib-metadata 4.6.4
isal 1.1.0
jeepney 0.7.1
jsonschema 4.17.3
keyring 23.5.0
launchpadlib 1.10.16
lazr.restfulclient 0.14.4
lazr.uri 1.0.6
logmuse 0.2.7
more-itertools 8.10.0
ngs 1.0
numpy 1.23.5
oauthlib 3.2.0
oyaml 1.0
pandas 1.5.2
pararead 0.7.0
peppy 0.35.3
pip 22.0.2
pip 22.3.1
piper 0.12.3
platformdirs 2.6.0
psutil 5.9.4
pyfaidx 0.7.1
pyparsing 2.4.7
pyrsistent 0.19.2
pysam 0.20.0
python-Levenshtein 0.20.8
python-apt 2.3.0 ubuntu2.1
python-dateutil 2.8.2
pytz 2022.6
rapidfuzz 2.13.4
refgenconf 0.12.2
refgenie 0.12.1
requests 2.28.1
rich 12.6.0
setuptools 59.6.0
six 1.16.0
tqdm 4.64.1
ubiquerg 0.6.2
urllib3 1.26.13
virtualenv 20.17.1
wadllib 1.3.6
wheel 0.37.1
xopen 1.7.0
yacman 0.8.4
zipp 1.0.0