joshuatobin257/align : latest
Latest release: almost 3 years ago - 605 downloads - 377 dependencies
JSONDependencies
- ubuntu/adduser 3.118ubuntu2
- ubuntu/apt 2.0.9
- ubuntu/base-files 11ubuntu5.7
- ubuntu/base-passwd 3.5.47
- ubuntu/bash 5.0-6ubuntu1.2
- ubuntu/bc 1.07.1-2build1
- ubuntu/binutils-common 2.34-6ubuntu1.6
- ubuntu/binutils-x86-64-linux-gnu 2.34-6ubuntu1.6
- ubuntu/binutils 2.34-6ubuntu1.6
- ubuntu/bsdutils 1:2.34-0.1ubuntu9.4
- ubuntu/build-essential 12.8ubuntu1.1
- ubuntu/bzip2 1.0.8-2
- ubuntu/ca-certificates-java 20190405ubuntu1.1
- ubuntu/ca-certificates 20230311ubuntu0.20.04.1
- ubuntu/cmake-data 3.16.3-1ubuntu1.20.04.1
- ubuntu/cmake 3.16.3-1ubuntu1.20.04.1
- ubuntu/coreutils 8.30-3ubuntu2
- ubuntu/cpp-9 9.4.0-1ubuntu1~20.04.2
- ubuntu/cpp 4:9.3.0-1ubuntu2
- ubuntu/curl 7.68.0-1ubuntu2.19
- ubuntu/dash 0.5.10.2-6
- ubuntu/debconf 1.5.73
- ubuntu/debianutils 4.9.1
- ubuntu/diffutils 1:3.7-3
- ubuntu/dpkg-dev 1.19.7ubuntu3.2
- ubuntu/dpkg 1.19.7ubuntu3.2
- ubuntu/e2fsprogs 1.45.5-2ubuntu1.1
- ubuntu/fdisk 2.34-0.1ubuntu9.4
- ubuntu/findutils 4.7.0-1ubuntu1
- ubuntu/fontconfig-config 2.13.1-2ubuntu3
- ubuntu/fonts-dejavu-core 2.37-1
- ubuntu/g -9 9.4.0-1ubuntu1~20.04.2
- ubuntu/g 4:9.3.0-1ubuntu2
- ubuntu/gcc-10-base 10.5.0-1ubuntu1~20.04
- ubuntu/gcc-9-base 9.4.0-1ubuntu1~20.04.2
- ubuntu/gcc-9 9.4.0-1ubuntu1~20.04.2
- ubuntu/gcc 4:9.3.0-1ubuntu2
- ubuntu/gettext-base 0.19.8.1-10build1
- ubuntu/gettext 0.19.8.1-10build1
- ubuntu/git-man 1:2.25.1-1ubuntu3.11
- ubuntu/git 1:2.25.1-1ubuntu3.11
- ubuntu/gpgv 2.2.19-3ubuntu2.2
- ubuntu/grep 3.4-1
- ubuntu/gzip 1.10-0ubuntu4.1
- ubuntu/hostname 3.23
- ubuntu/init-system-helpers 1.57
- ubuntu/java-common 0.72
- ubuntu/less 551-1ubuntu0.1
- ubuntu/libacl1 2.2.53-6
- ubuntu/libapt-pkg6.0 2.0.9
- ubuntu/libarchive13 3.4.0-2ubuntu1.2
- ubuntu/libasan5 9.4.0-1ubuntu1~20.04.2
- ubuntu/libasn1-8-heimdal 7.7.0 dfsg-1ubuntu1.4
- ubuntu/libasound2-data 1.2.2-2.1ubuntu2.5
- ubuntu/libasound2 1.2.2-2.1ubuntu2.5
- ubuntu/libatomic1 10.5.0-1ubuntu1~20.04
- ubuntu/libattr1 1:2.4.48-5
- ubuntu/libaudit-common 1:2.8.5-2ubuntu6
- ubuntu/libaudit1 1:2.8.5-2ubuntu6
- ubuntu/libavahi-client3 0.7-4ubuntu7.2
- ubuntu/libavahi-common-data 0.7-4ubuntu7.2
- ubuntu/libavahi-common3 0.7-4ubuntu7.2
- ubuntu/libbinutils 2.34-6ubuntu1.6
- ubuntu/libblkid1 2.34-0.1ubuntu9.4
- ubuntu/libbrotli1 1.0.7-6ubuntu0.1
- ubuntu/libbsd0 0.10.0-1
- ubuntu/libbz2-1.0 1.0.8-2
- ubuntu/libbz2-dev 1.0.8-2
- ubuntu/libc-bin 2.31-0ubuntu9.9
- ubuntu/libc-dev-bin 2.31-0ubuntu9.9
- ubuntu/libc6-dev 2.31-0ubuntu9.9
- ubuntu/libc6 2.31-0ubuntu9.9
- ubuntu/libcanberra0 0.30-7ubuntu1
- ubuntu/libcap-ng0 0.7.9-2.1build1
- ubuntu/libcc1-0 10.5.0-1ubuntu1~20.04
- ubuntu/libcom-err2 1.45.5-2ubuntu1.1
- ubuntu/libcroco3 0.6.13-1
- ubuntu/libcrypt-dev 1:4.4.10-10ubuntu4
- ubuntu/libcrypt1 1:4.4.10-10ubuntu4
- ubuntu/libctf-nobfd0 2.34-6ubuntu1.6
- ubuntu/libctf0 2.34-6ubuntu1.6
- ubuntu/libcups2 2.3.1-9ubuntu1.6
- ubuntu/libcurl3-gnutls 7.68.0-1ubuntu2.19
- ubuntu/libcurl4-gnutls-dev 7.68.0-1ubuntu2.19
- ubuntu/libcurl4 7.68.0-1ubuntu2.19
- ubuntu/libdb5.3 5.3.28 dfsg1-0.6ubuntu2
- ubuntu/libdbus-1-3 1.12.16-2ubuntu2.3
- ubuntu/libdebconfclient0 0.251ubuntu1
- ubuntu/libdpkg-perl 1.19.7ubuntu3.2
- ubuntu/libdrm-amdgpu1 2.4.107-8ubuntu1~20.04.2
- ubuntu/libdrm-common 2.4.107-8ubuntu1~20.04.2
- ubuntu/libdrm-intel1 2.4.107-8ubuntu1~20.04.2
- ubuntu/libdrm-nouveau2 2.4.107-8ubuntu1~20.04.2
- ubuntu/libdrm-radeon1 2.4.107-8ubuntu1~20.04.2
- ubuntu/libdrm2 2.4.107-8ubuntu1~20.04.2
- ubuntu/libedit2 3.1-20191231-1
- ubuntu/libelf1 0.176-1.1ubuntu0.1
- ubuntu/liberror-perl 0.17029-1
- ubuntu/libexpat1-dev 2.2.9-1ubuntu0.6
- ubuntu/libexpat1 2.2.9-1ubuntu0.6
- ubuntu/libext2fs2 1.45.5-2ubuntu1.1
- ubuntu/libfdisk1 2.34-0.1ubuntu9.4
- ubuntu/libffi7 3.3-4
- ubuntu/libfontconfig1 2.13.1-2ubuntu3
- ubuntu/libfreetype6 2.10.1-2ubuntu0.3
- ubuntu/libgcc-9-dev 9.4.0-1ubuntu1~20.04.2
- ubuntu/libgcc-s1 10.5.0-1ubuntu1~20.04
- ubuntu/libgcrypt20 1.8.5-5ubuntu1.1
- ubuntu/libgdbm-compat4 1.18.1-5
- ubuntu/libgdbm6 1.18.1-5
- ubuntu/libgif7 5.1.9-1
- ubuntu/libgl1-mesa-dri 21.2.6-0ubuntu0.1~20.04.2
- ubuntu/libgl1 1.3.2-1~ubuntu0.20.04.2
- ubuntu/libglapi-mesa 21.2.6-0ubuntu0.1~20.04.2
- ubuntu/libglib2.0-0 2.64.6-1~ubuntu20.04.6
- ubuntu/libglvnd0 1.3.2-1~ubuntu0.20.04.2
- ubuntu/libglx-mesa0 21.2.6-0ubuntu0.1~20.04.2
- ubuntu/libglx0 1.3.2-1~ubuntu0.20.04.2
- ubuntu/libgmp10 2:6.2.0 dfsg-4ubuntu0.1
- ubuntu/libgnutls30 3.6.13-2ubuntu1.8
- ubuntu/libgomp1 10.5.0-1ubuntu1~20.04
- ubuntu/libgpg-error0 1.37-1
- ubuntu/libgpm2 1.20.7-5
- ubuntu/libgraphite2-3 1.3.13-11build1
- ubuntu/libgssapi-krb5-2 1.17-6ubuntu4.3
- ubuntu/libgssapi3-heimdal 7.7.0 dfsg-1ubuntu1.4
- ubuntu/libharfbuzz0b 2.6.4-1ubuntu4.2
- ubuntu/libhcrypto4-heimdal 7.7.0 dfsg-1ubuntu1.4
- ubuntu/libheimbase1-heimdal 7.7.0 dfsg-1ubuntu1.4
- ubuntu/libheimntlm0-heimdal 7.7.0 dfsg-1ubuntu1.4
- ubuntu/libhogweed5 3.5.1 really3.5.1-2ubuntu0.2
- ubuntu/libhx509-5-heimdal 7.7.0 dfsg-1ubuntu1.4
- ubuntu/libicu66 66.1-2ubuntu2.1
- ubuntu/libidn2-0 2.2.0-2
- ubuntu/libisl22 0.22.1-1
- ubuntu/libitm1 10.5.0-1ubuntu1~20.04
- ubuntu/libjpeg-turbo8 2.0.3-0ubuntu1.20.04.3
- ubuntu/libjpeg8 8c-2ubuntu8
- ubuntu/libjsoncpp1 1.7.4-3.1ubuntu2
- ubuntu/libk5crypto3 1.17-6ubuntu4.3
- ubuntu/libkeyutils1 1.6-6ubuntu1.1
- ubuntu/libkrb5-26-heimdal 7.7.0 dfsg-1ubuntu1.4
- ubuntu/libkrb5-3 1.17-6ubuntu4.3
- ubuntu/libkrb5support0 1.17-6ubuntu4.3
- ubuntu/liblcms2-2 2.9-4
- ubuntu/libldap-2.4-2 2.4.49 dfsg-2ubuntu1.9
- ubuntu/libldap-common 2.4.49 dfsg-2ubuntu1.9
- ubuntu/libllvm12 1:12.0.0-3ubuntu1~20.04.5
- ubuntu/liblsan0 10.5.0-1ubuntu1~20.04
- ubuntu/libltdl7 2.4.6-14
- ubuntu/liblz4-1 1.9.2-2ubuntu0.20.04.1
- ubuntu/liblzma-dev 5.2.4-1ubuntu1.1
- ubuntu/liblzma5 5.2.4-1ubuntu1.1
- ubuntu/libmount1 2.34-0.1ubuntu9.4
- ubuntu/libmpc3 1.1.0-1
- ubuntu/libmpdec2 2.4.2-3
- ubuntu/libmpfr6 4.0.2-1
- ubuntu/libncurses-dev 6.2-0ubuntu2.1
- ubuntu/libncurses5-dev 6.2-0ubuntu2.1
- ubuntu/libncurses6 6.2-0ubuntu2.1
- ubuntu/libncursesw6 6.2-0ubuntu2.1
- ubuntu/libnettle7 3.5.1 really3.5.1-2ubuntu0.2
- ubuntu/libnghttp2-14 1.40.0-1ubuntu0.1
- ubuntu/libnspr4 2:4.25-1
- ubuntu/libnss-sss 2.2.3-3ubuntu0.12
- ubuntu/libnss3 2:3.49.1-1ubuntu1.9
- ubuntu/libogg0 1.3.4-0ubuntu1
- ubuntu/libp11-kit0 0.23.20-1ubuntu0.1
- ubuntu/libpam-modules-bin 1.3.1-5ubuntu4.6
- ubuntu/libpam-modules 1.3.1-5ubuntu4.6
- ubuntu/libpam-runtime 1.3.1-5ubuntu4.6
- ubuntu/libpam0g 1.3.1-5ubuntu4.6
- ubuntu/libpciaccess0 0.16-0ubuntu1
- ubuntu/libpcre2-8-0 10.34-7ubuntu0.1
- ubuntu/libpcre3 2:8.39-12ubuntu0.1
- ubuntu/libpcsclite1 1.8.26-3
- ubuntu/libperl5.30 5.30.0-9ubuntu0.4
- ubuntu/libpng16-16 1.6.37-2
- ubuntu/libprocps8 2:3.3.16-1ubuntu2.3
- ubuntu/libpsl5 0.21.0-1ubuntu1
- ubuntu/libpython3-stdlib 3.8.2-0ubuntu2
- ubuntu/libpython3.8-minimal 3.8.10-0ubuntu1~20.04.8
- ubuntu/libpython3.8-stdlib 3.8.10-0ubuntu1~20.04.8
- ubuntu/libpython3.8 3.8.10-0ubuntu1~20.04.8
- ubuntu/libquadmath0 10.5.0-1ubuntu1~20.04
- ubuntu/libreadline8 8.0-4
- ubuntu/librhash0 1.3.9-1
- ubuntu/libroken18-heimdal 7.7.0 dfsg-1ubuntu1.4
- ubuntu/librtmp1 2.4 20151223.gitfa8646d.1-2build1
- ubuntu/libsasl2-2 2.1.27 dfsg-2ubuntu0.1
- ubuntu/libsasl2-modules-db 2.1.27 dfsg-2ubuntu0.1
- ubuntu/libseccomp2 2.5.1-1ubuntu1~20.04.2
- ubuntu/libselinux1 3.0-1build2
- ubuntu/libsemanage-common 3.0-1build2
- ubuntu/libsemanage1 3.0-1build2
- ubuntu/libsensors-config 1:3.6.0-2ubuntu1.1
- ubuntu/libsensors5 1:3.6.0-2ubuntu1.1
- ubuntu/libsepol1 3.0-1ubuntu0.1
- ubuntu/libsmartcols1 2.34-0.1ubuntu9.4
- ubuntu/libsqlite3-0 3.31.1-4ubuntu0.5
- ubuntu/libss2 1.45.5-2ubuntu1.1
- ubuntu/libssh-4 0.9.3-2ubuntu2.3
- ubuntu/libssl-dev 1.1.1f-1ubuntu2.19
- ubuntu/libssl1.1 1.1.1f-1ubuntu2.19
- ubuntu/libstdc -9-dev 9.4.0-1ubuntu1~20.04.2
- ubuntu/libstdc 6 10.5.0-1ubuntu1~20.04
- ubuntu/libsystemd0 245.4-4ubuntu3.22
- ubuntu/libtasn1-6 4.16.0-2
- ubuntu/libtdb1 1.4.5-0ubuntu0.20.04.1
- ubuntu/libtinfo6 6.2-0ubuntu2.1
- ubuntu/libtsan0 10.5.0-1ubuntu1~20.04
- ubuntu/libubsan1 10.5.0-1ubuntu1~20.04
- ubuntu/libudev1 245.4-4ubuntu3.22
- ubuntu/libunistring2 0.9.10-2
- ubuntu/libuuid1 2.34-0.1ubuntu9.4
- ubuntu/libuv1 1.34.2-1ubuntu1.3
- ubuntu/libvorbis0a 1.3.6-2ubuntu1
- ubuntu/libvorbisfile3 1.3.6-2ubuntu1
- ubuntu/libvulkan1 1.2.131.2-1
- ubuntu/libwind0-heimdal 7.7.0 dfsg-1ubuntu1.4
- ubuntu/libx11-6 2:1.6.9-2ubuntu1.5
- ubuntu/libx11-data 2:1.6.9-2ubuntu1.5
- ubuntu/libx11-xcb1 2:1.6.9-2ubuntu1.5
- ubuntu/libxau6 1:1.0.9-0ubuntu1
- ubuntu/libxcb-dri2-0 1.14-2
- ubuntu/libxcb-dri3-0 1.14-2
- ubuntu/libxcb-glx0 1.14-2
- ubuntu/libxcb-present0 1.14-2
- ubuntu/libxcb-shm0 1.14-2
- ubuntu/libxcb-sync1 1.14-2
- ubuntu/libxcb-xfixes0 1.14-2
- ubuntu/libxcb1 1.14-2
- ubuntu/libxdmcp6 1:1.1.3-0ubuntu1
- ubuntu/libxext6 2:1.3.4-0ubuntu1
- ubuntu/libxfixes3 1:5.0.3-2
- ubuntu/libxi6 2:1.7.10-0ubuntu1
- ubuntu/libxml2 2.9.10 dfsg-5ubuntu0.20.04.6
- ubuntu/libxrender1 1:0.9.10-1
- ubuntu/libxshmfence1 1.3-1
- ubuntu/libxtst6 2:1.2.3-1
- ubuntu/libxxf86vm1 1:1.1.4-1build1
- ubuntu/libzstd1 1.4.4 dfsg-3ubuntu0.1
- ubuntu/linux-libc-dev 5.4.0-163.180
- ubuntu/login 1:4.8.1-1ubuntu5.20.04.4
- ubuntu/logsave 1.45.5-2ubuntu1.1
- ubuntu/lsb-base 11.1.0ubuntu2
- ubuntu/make 4.2.1-1.2
- ubuntu/mawk 1.3.4.20200120-2
- ubuntu/mime-support 3.64ubuntu1
- ubuntu/mount 2.34-0.1ubuntu9.4
- ubuntu/ncurses-base 6.2-0ubuntu2.1
- ubuntu/ncurses-bin 6.2-0ubuntu2.1
- ubuntu/openjdk-11-jre-headless 11.0.20.1 1-0ubuntu1~20.04
- ubuntu/openjdk-11-jre 11.0.20.1 1-0ubuntu1~20.04
- ubuntu/openssl 1.1.1f-1ubuntu2.19
- ubuntu/passwd 1:4.8.1-1ubuntu5.20.04.4
- ubuntu/patch 2.7.6-6
- ubuntu/perl-base 5.30.0-9ubuntu0.4
- ubuntu/perl-modules-5.30 5.30.0-9ubuntu0.4
- ubuntu/perl 5.30.0-9ubuntu0.4
- ubuntu/procps 2:3.3.16-1ubuntu2.3
- ubuntu/python3-minimal 3.8.2-0ubuntu2
- ubuntu/python3.8-minimal 3.8.10-0ubuntu1~20.04.8
- ubuntu/python3.8 3.8.10-0ubuntu1~20.04.8
- ubuntu/python3 3.8.2-0ubuntu2
- ubuntu/readline-common 8.0-4
- ubuntu/sed 4.7-1
- ubuntu/sensible-utils 0.0.12 nmu1
- ubuntu/sound-theme-freedesktop 0.8-2ubuntu1
- ubuntu/sysvinit-utils 2.96-2.1ubuntu1
- ubuntu/tar 1.30 dfsg-7ubuntu0.20.04.3
- ubuntu/tzdata 2023c-0ubuntu0.20.04.2
- ubuntu/ubuntu-keyring 2020.02.11.4
- ubuntu/ucf 3.0038 nmu1
- ubuntu/unzip 6.0-25ubuntu1.1
- ubuntu/util-linux 2.34-0.1ubuntu9.4
- ubuntu/vim-common 2:8.1.2269-1ubuntu5.17
- ubuntu/vim-runtime 2:8.1.2269-1ubuntu5.17
- ubuntu/vim 2:8.1.2269-1ubuntu5.17
- ubuntu/wget 1.20.3-1ubuntu2
- ubuntu/x11-common 1:7.7 19ubuntu14
- ubuntu/xxd 2:8.1.2269-1ubuntu5.17
- ubuntu/xz-utils 5.2.4-1ubuntu1.1
- ubuntu/zlib1g-dev 1:1.2.11.dfsg-2ubuntu1.5
- ubuntu/zlib1g 1:1.2.11.dfsg-2ubuntu1.5
- bash 5.0.17
- AbsoluteLayout-RELEASE110:AbsoluteLayout-RELEASE110 *
- cisd-jhdf5:cisd-jhdf5 *
- com.fasterxml.jackson.core:jackson-annotations 2.12.1
- com.fasterxml.jackson.core:jackson-core 2.12.1
- com.fasterxml.jackson.core:jackson-databind 2.12.1
- com.google.code.gson:gson 2.8.5
- com.google.guava:guava 15.0
- com.google.guava:guava 27.0.1-jre
- com.google.j2objc:j2objc-annotations 1.1
- com.jidesoft.utils.Lm:jide-common 3.7.3
- com.typesafe.netty:netty-reactive-streams-http 2.0.4
- com.typesafe.netty:netty-reactive-streams 2.0.4
- commons-codec:commons-codec 1.11
- commons-io:commons-io 1.4
- commons-io:commons-io 2.4
- commons-io:commons-io 2.6
- commons-lang:commons-lang 2.4
- commons-lang:commons-lang 2.6
- commons-logging:commons-logging 1.1.1
- commons-logging:commons-logging 1.2
- gettext:gettext *
- htsjdk:htsjdk 3.0.0
- io.netty:netty-buffer 4.1.59.Final
- io.netty:netty-codec-http 4.1.59.Final
- io.netty:netty-codec 4.1.59.Final
- io.netty:netty-common 4.1.59.Final
- io.netty:netty-handler 4.1.59.Final
- io.netty:netty-resolver 4.1.59.Final
- io.netty:netty-transport-native-epoll 4.1.59.Final
- io.netty:netty-transport-native-unix-common 4.1.59.Final
- io.netty:netty-transport 4.1.59.Final
- jbzip2:jbzip2 0.9
- jrt-fs:jrt-fs 11.0.20.1
- libintl:libintl *
- net.sf.jopt-simple:jopt-simple 5.0.3
- ngs-java:ngs-java 2.9.0
- org.apache.commons:commons-collections4 4.3
- org.apache.commons:commons-compress 1.19
- org.apache.commons:commons-compress 1.4.1
- org.apache.commons:commons-jexl 2.1.1
- org.apache.commons:commons-lang3 3.4
- org.apache.commons:commons-lang3 3.9
- org.apache.commons:commons-math3 3.5
- org.apache.commons:commons-math3 3.6.1
- org.apache.httpcomponents:httpclient 4.5.13
- org.apache.httpcomponents:httpcore 4.4.13
- org.apache.logging.log4j:log4j-api 2.5
- org.apache.logging.log4j:log4j-core 2.5
- org.apache.xmlgraphics:batik-awt-util 1.11
- org.apache.xmlgraphics:batik-codec 1.11
- org.apache.xmlgraphics:batik-constants 1.11
- org.apache.xmlgraphics:batik-dom 1.11
- org.apache.xmlgraphics:batik-ext 1.11
- org.apache.xmlgraphics:batik-i18n 1.11
- org.apache.xmlgraphics:batik-svggen 1.11
- org.apache.xmlgraphics:batik-transcoder 1.11
- org.apache.xmlgraphics:batik-util 1.11
- org.apache.xmlgraphics:batik-xml 1.11
- org.broad.igv.ui.Main:igv *
- org.broadinstitute.pilon.Pilon:pilon 1.24
- org.debian.security.UpdateCertificates:ca-certificates-java *
- org.jctools:jctools-core 3.1.0
- org.reactivestreams.reactive-streams:reactive-streams 1.0.3
- org.sharegov:mjson 1.4.1
- org.slf4j:slf4j-api 1.7.28
- org.xerial.snappy:snappy-java 1.1.8.4
- picard:picard 2.21.5-SNAPSHOT
- sam:sam 1.103
- software.amazon.awssdk:annotations 2.16.7
- software.amazon.awssdk:apache-client 2.16.7
- software.amazon.awssdk:arns 2.16.7
- software.amazon.awssdk:auth 2.16.7
- software.amazon.awssdk:aws-core 2.16.7
- software.amazon.awssdk:aws-json-protocol 2.16.7
- software.amazon.awssdk:aws-query-protocol 2.16.7
- software.amazon.awssdk:aws-xml-protocol 2.16.7
- software.amazon.awssdk:cognitoidentity 2.16.7
- software.amazon.awssdk:http-client-spi 2.16.7
- software.amazon.awssdk:metrics-spi 2.16.7
- software.amazon.awssdk:netty-nio-client 2.16.7
- software.amazon.awssdk:profiles 2.16.7
- software.amazon.awssdk:protocol-core 2.16.7
- software.amazon.awssdk:regions 2.16.7
- software.amazon.awssdk:s3 2.16.7
- software.amazon.awssdk:sdk-core 2.16.7
- software.amazon.awssdk:sts 2.16.7
- software.amazon.awssdk:utils 2.16.7
- software.amazon.eventstream:eventstream 1.0.1
- swing-layout:swing-layout 1.0.3
- xmlgraphics-commons:xmlgraphics-commons 2.3