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ggrimes/dnascent : latest
Software for detecting contiguous regions of base analogues incorporated in Oxford Nanopore reads.
Latest release: over 1 year ago - 11 downloads - 265 dependencies
JSONDependencies
- ubuntu/adduser 3.113 nmu3ubuntu4
- ubuntu/apt 1.2.35
- ubuntu/base-files 9.4ubuntu4.13
- ubuntu/base-passwd 3.5.39
- ubuntu/bash 4.3-14ubuntu1.4
- ubuntu/binutils 2.26.1-1ubuntu1~16.04.8
- ubuntu/bsdutils 1:2.27.1-6ubuntu3.10
- ubuntu/build-essential 12.1ubuntu2
- ubuntu/bzip2-doc 1.0.6-8ubuntu0.2
- ubuntu/bzip2 1.0.6-8ubuntu0.2
- ubuntu/ca-certificates 20210119~16.04.1
- ubuntu/coreutils 8.25-2ubuntu3~16.04
- ubuntu/cpp-5 5.4.0-6ubuntu1~16.04.12
- ubuntu/cpp-9 9.4.0-1ubuntu1~16.04
- ubuntu/cpp 4:5.3.1-1ubuntu1
- ubuntu/cron 3.0pl1-128ubuntu2
- ubuntu/dash 0.5.8-2.1ubuntu2
- ubuntu/dbus 1.10.6-1ubuntu3.6
- ubuntu/debconf 1.5.58ubuntu2
- ubuntu/debianutils 4.7
- ubuntu/dh-python 2.20151103ubuntu1.2
- ubuntu/diffutils 1:3.3-3
- ubuntu/distro-info-data 0.28ubuntu0.18
- ubuntu/dpkg-dev 1.18.4ubuntu1.7
- ubuntu/dpkg 1.18.4ubuntu1.7
- ubuntu/e2fslibs 1.42.13-1ubuntu1.2
- ubuntu/e2fsprogs 1.42.13-1ubuntu1.2
- ubuntu/fakeroot 1.20.2-1ubuntu1
- ubuntu/file 1:5.25-2ubuntu1.4
- ubuntu/findutils 4.6.0 git 20160126-2
- ubuntu/g -5 5.4.0-6ubuntu1~16.04.12
- ubuntu/g -9 9.4.0-1ubuntu1~16.04
- ubuntu/g 4:5.3.1-1ubuntu1
- ubuntu/gcc-5-base 5.4.0-6ubuntu1~16.04.12
- ubuntu/gcc-5 5.4.0-6ubuntu1~16.04.12
- ubuntu/gcc-6-base 6.0.1-0ubuntu1
- ubuntu/gcc-9-base 9.4.0-1ubuntu1~16.04
- ubuntu/gcc-9 9.4.0-1ubuntu1~16.04
- ubuntu/gcc 4:5.3.1-1ubuntu1
- ubuntu/gir1.2-glib-2.0 1.46.0-3ubuntu1
- ubuntu/git-man 1:2.7.4-0ubuntu1.10
- ubuntu/git 1:2.7.4-0ubuntu1.10
- ubuntu/gnupg 1.4.20-1ubuntu3.3
- ubuntu/gpgv 1.4.20-1ubuntu3.3
- ubuntu/grep 2.25-1~16.04.1
- ubuntu/gzip 1.6-4ubuntu1
- ubuntu/hostname 3.16ubuntu2
- ubuntu/ifupdown 0.8.10ubuntu1.4
- ubuntu/init-system-helpers 1.29ubuntu4
- ubuntu/init 1.29ubuntu4
- ubuntu/initscripts 2.88dsf-59.3ubuntu2
- ubuntu/insserv 1.14.0-5ubuntu3
- ubuntu/iproute2 4.3.0-1ubuntu3.16.04.5
- ubuntu/isc-dhcp-client 4.3.3-5ubuntu12.10
- ubuntu/isc-dhcp-common 4.3.3-5ubuntu12.10
- ubuntu/iso-codes 3.65-1
- ubuntu/krb5-locales 1.13.2 dfsg-5ubuntu2.2
- ubuntu/less 481-2.1ubuntu0.2
- ubuntu/libacl1 2.2.52-3
- ubuntu/libalgorithm-diff-perl 1.19.03-1
- ubuntu/libalgorithm-diff-xs-perl 0.04-4build1
- ubuntu/libalgorithm-merge-perl 0.08-3
- ubuntu/libapparmor1 2.10.95-0ubuntu2.11
- ubuntu/libapt-inst2.0 1.2.35
- ubuntu/libapt-pkg5.0 1.2.35
- ubuntu/libasan2 5.4.0-6ubuntu1~16.04.12
- ubuntu/libasan5 9.4.0-1ubuntu1~16.04
- ubuntu/libasn1-8-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
- ubuntu/libatm1 1:2.5.1-1.5
- ubuntu/libatomic1 9.4.0-1ubuntu1~16.04
- ubuntu/libattr1 1:2.4.47-2
- ubuntu/libaudit-common 1:2.4.5-1ubuntu2.1
- ubuntu/libaudit1 1:2.4.5-1ubuntu2.1
- ubuntu/libblkid1 2.27.1-6ubuntu3.10
- ubuntu/libbsd0 0.8.2-1ubuntu0.1
- ubuntu/libbz2-1.0 1.0.6-8ubuntu0.2
- ubuntu/libbz2-dev 1.0.6-8ubuntu0.2
- ubuntu/libc-bin 2.23-0ubuntu11.3
- ubuntu/libc-dev-bin 2.23-0ubuntu11.3
- ubuntu/libc6-dev 2.23-0ubuntu11.3
- ubuntu/libc6 2.23-0ubuntu11.3
- ubuntu/libcap-ng0 0.7.7-1
- ubuntu/libcap2-bin 1:2.24-12
- ubuntu/libcap2 1:2.24-12
- ubuntu/libcc1-0 9.4.0-1ubuntu1~16.04
- ubuntu/libcilkrts5 5.4.0-6ubuntu1~16.04.12
- ubuntu/libcomerr2 1.42.13-1ubuntu1.2
- ubuntu/libcryptsetup4 2:1.6.6-5ubuntu2.1
- ubuntu/libcurl3-gnutls 7.47.0-1ubuntu2.19
- ubuntu/libcurl3 7.47.0-1ubuntu2.19
- ubuntu/libcurl4-openssl-dev 7.47.0-1ubuntu2.19
- ubuntu/libdb5.3 5.3.28-11ubuntu0.2
- ubuntu/libdbus-1-3 1.10.6-1ubuntu3.6
- ubuntu/libdbus-glib-1-2 0.106-1
- ubuntu/libdebconfclient0 0.198ubuntu1
- ubuntu/libdevmapper1.02.1 2:1.02.110-1ubuntu10
- ubuntu/libdns-export162 1:9.10.3.dfsg.P4-8ubuntu1.19
- ubuntu/libdpkg-perl 1.18.4ubuntu1.7
- ubuntu/libedit2 3.1-20150325-1ubuntu2
- ubuntu/liberror-perl 0.17-1.2
- ubuntu/libexpat1 2.1.0-7ubuntu0.16.04.5
- ubuntu/libfakeroot 1.20.2-1ubuntu1
- ubuntu/libfdisk1 2.27.1-6ubuntu3.10
- ubuntu/libffi6 3.2.1-4
- ubuntu/libfile-fcntllock-perl 0.22-3
- ubuntu/libgcc-5-dev 5.4.0-6ubuntu1~16.04.12
- ubuntu/libgcc-9-dev 9.4.0-1ubuntu1~16.04
- ubuntu/libgcc1 1:9.4.0-1ubuntu1~16.04
- ubuntu/libgcrypt20 1.6.5-2ubuntu0.6
- ubuntu/libgdbm3 1.8.3-13.1
- ubuntu/libgirepository-1.0-1 1.46.0-3ubuntu1
- ubuntu/libglib2.0-0 2.48.2-0ubuntu4.8
- ubuntu/libglib2.0-data 2.48.2-0ubuntu4.8
- ubuntu/libgmp10 2:6.1.0 dfsg-2
- ubuntu/libgnutls30 3.4.10-4ubuntu1.9
- ubuntu/libgomp1 9.4.0-1ubuntu1~16.04
- ubuntu/libgpg-error0 1.21-2ubuntu1
- ubuntu/libgssapi-krb5-2 1.13.2 dfsg-5ubuntu2.2
- ubuntu/libgssapi3-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
- ubuntu/libhcrypto4-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
- ubuntu/libheimbase1-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
- ubuntu/libheimntlm0-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
- ubuntu/libhogweed4 3.2-1ubuntu0.16.04.2
- ubuntu/libhx509-5-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
- ubuntu/libicu55 55.1-7ubuntu0.5
- ubuntu/libidn11 1.32-3ubuntu1.2
- ubuntu/libisc-export160 1:9.10.3.dfsg.P4-8ubuntu1.19
- ubuntu/libisl15 0.16.1-1
- ubuntu/libitm1 9.4.0-1ubuntu1~16.04
- ubuntu/libk5crypto3 1.13.2 dfsg-5ubuntu2.2
- ubuntu/libkeyutils1 1.5.9-8ubuntu1
- ubuntu/libkmod2 22-1ubuntu5.2
- ubuntu/libkrb5-26-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
- ubuntu/libkrb5-3 1.13.2 dfsg-5ubuntu2.2
- ubuntu/libkrb5support0 1.13.2 dfsg-5ubuntu2.2
- ubuntu/libldap-2.4-2 2.4.42 dfsg-2ubuntu3.13
- ubuntu/liblsan0 9.4.0-1ubuntu1~16.04
- ubuntu/liblz4-1 0.0~r131-2ubuntu2
- ubuntu/liblzma-dev 5.1.1alpha 20120614-2ubuntu2
- ubuntu/liblzma5 5.1.1alpha 20120614-2ubuntu2
- ubuntu/libmagic1 1:5.25-2ubuntu1.4
- ubuntu/libmnl0 1.0.3-5
- ubuntu/libmount1 2.27.1-6ubuntu3.10
- ubuntu/libmpc3 1.0.3-1
- ubuntu/libmpdec2 2.4.2-1
- ubuntu/libmpfr4 3.1.4-1
- ubuntu/libmpx0 5.4.0-6ubuntu1~16.04.12
- ubuntu/libncurses5-dev 6.0 20160213-1ubuntu1
- ubuntu/libncurses5 6.0 20160213-1ubuntu1
- ubuntu/libncursesw5 6.0 20160213-1ubuntu1
- ubuntu/libnettle6 3.2-1ubuntu0.16.04.2
- ubuntu/libp11-kit0 0.23.2-5~ubuntu16.04.2
- ubuntu/libpam-modules-bin 1.1.8-3.2ubuntu2.3
- ubuntu/libpam-modules 1.1.8-3.2ubuntu2.3
- ubuntu/libpam-runtime 1.1.8-3.2ubuntu2.3
- ubuntu/libpam0g 1.1.8-3.2ubuntu2.3
- ubuntu/libpcre3 2:8.38-3.1
- ubuntu/libperl5.22 5.22.1-9ubuntu0.9
- ubuntu/libpopt0 1.16-10
- ubuntu/libprocps4 2:3.3.10-4ubuntu2.5
- ubuntu/libpython3-stdlib 3.5.1-3
- ubuntu/libpython3.5-minimal 3.5.2-2ubuntu0~16.04.13
- ubuntu/libpython3.5-stdlib 3.5.2-2ubuntu0~16.04.13
- ubuntu/libquadmath0 9.4.0-1ubuntu1~16.04
- ubuntu/libreadline6 6.3-8ubuntu2
- ubuntu/libroken18-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
- ubuntu/librtmp1 2.4 20151223.gitfa8646d-1ubuntu0.1
- ubuntu/libsasl2-2 2.1.26.dfsg1-14ubuntu0.2
- ubuntu/libsasl2-modules-db 2.1.26.dfsg1-14ubuntu0.2
- ubuntu/libsasl2-modules 2.1.26.dfsg1-14ubuntu0.2
- ubuntu/libseccomp2 2.5.1-1ubuntu1~16.04.1
- ubuntu/libselinux1 2.4-3build2
- ubuntu/libsemanage-common 2.3-1build3
- ubuntu/libsemanage1 2.3-1build3
- ubuntu/libsepol1 2.4-2
- ubuntu/libsmartcols1 2.27.1-6ubuntu3.10
- ubuntu/libsqlite3-0 3.11.0-1ubuntu1.5
- ubuntu/libss2 1.42.13-1ubuntu1.2
- ubuntu/libssl-dev 1.0.2g-1ubuntu4.20
- ubuntu/libssl-doc 1.0.2g-1ubuntu4.20
- ubuntu/libssl1.0.0 1.0.2g-1ubuntu4.20
- ubuntu/libstdc -5-dev 5.4.0-6ubuntu1~16.04.12
- ubuntu/libstdc -9-dev 9.4.0-1ubuntu1~16.04
- ubuntu/libstdc 6 9.4.0-1ubuntu1~16.04
- ubuntu/libsystemd0 229-4ubuntu21.31
- ubuntu/libtasn1-6 4.7-3ubuntu0.16.04.3
- ubuntu/libtinfo-dev 6.0 20160213-1ubuntu1
- ubuntu/libtinfo5 6.0 20160213-1ubuntu1
- ubuntu/libtsan0 9.4.0-1ubuntu1~16.04
- ubuntu/libubsan0 5.4.0-6ubuntu1~16.04.12
- ubuntu/libubsan1 9.4.0-1ubuntu1~16.04
- ubuntu/libudev1 229-4ubuntu21.31
- ubuntu/libusb-0.1-4 2:0.1.12-28
- ubuntu/libustr-1.0-1 1.0.4-5
- ubuntu/libuuid1 2.27.1-6ubuntu3.10
- ubuntu/libwind0-heimdal 1.7~git20150920 dfsg-4ubuntu1.16.04.1
- ubuntu/libx11-6 2:1.6.3-1ubuntu2.2
- ubuntu/libx11-data 2:1.6.3-1ubuntu2.2
- ubuntu/libxau6 1:1.0.8-1
- ubuntu/libxcb1 1.11.1-1ubuntu1
- ubuntu/libxdmcp6 1:1.1.2-1.1
- ubuntu/libxext6 2:1.3.3-1
- ubuntu/libxml2 2.9.3 dfsg1-1ubuntu0.7
- ubuntu/libxmuu1 2:1.1.2-2
- ubuntu/libxtables11 1.6.0-2ubuntu3
- ubuntu/libzstd1 1.3.1 dfsg-1~ubuntu0.16.04.1
- ubuntu/linux-libc-dev 4.4.0-210.242
- ubuntu/login 1:4.2-3.1ubuntu5.4
- ubuntu/lsb-base 9.20160110ubuntu0.2
- ubuntu/lsb-release 9.20160110ubuntu0.2
- ubuntu/make 4.1-6
- ubuntu/makedev 2.3.1-93ubuntu2~ubuntu16.04.1
- ubuntu/manpages-dev 4.04-2
- ubuntu/manpages 4.04-2
- ubuntu/mawk 1.3.3-17ubuntu2
- ubuntu/mime-support 3.59ubuntu1
- ubuntu/mount 2.27.1-6ubuntu3.10
- ubuntu/multiarch-support 2.23-0ubuntu11.3
- ubuntu/ncurses-base 6.0 20160213-1ubuntu1
- ubuntu/ncurses-bin 6.0 20160213-1ubuntu1
- ubuntu/netbase 5.3
- ubuntu/openssh-client 1:7.2p2-4ubuntu2.10
- ubuntu/openssl 1.0.2g-1ubuntu4.20
- ubuntu/passwd 1:4.2-3.1ubuntu5.4
- ubuntu/patch 2.7.5-1ubuntu0.16.04.2
- ubuntu/perl-base 5.22.1-9ubuntu0.9
- ubuntu/perl-modules-5.22 5.22.1-9ubuntu0.9
- ubuntu/perl 5.22.1-9ubuntu0.9
- ubuntu/powermgmt-base 1.31 nmu1
- ubuntu/procps 2:3.3.10-4ubuntu2.5
- ubuntu/python-apt-common 1.1.0~beta1ubuntu0.16.04.12
- ubuntu/python3-apt 1.1.0~beta1ubuntu0.16.04.12
- ubuntu/python3-dbus 1.2.0-3
- ubuntu/python3-gi 3.20.0-0ubuntu1
- ubuntu/python3-minimal 3.5.1-3
- ubuntu/python3-pycurl 7.43.0-1ubuntu1
- ubuntu/python3-software-properties 0.96.20.10
- ubuntu/python3.5-minimal 3.5.2-2ubuntu0~16.04.13
- ubuntu/python3.5 3.5.2-2ubuntu0~16.04.13
- ubuntu/python3 3.5.1-3
- ubuntu/readline-common 6.3-8ubuntu2
- ubuntu/rename 0.20-4
- ubuntu/rsync 3.1.1-3ubuntu1.3
- ubuntu/sed 4.2.2-7
- ubuntu/sensible-utils 0.0.9ubuntu0.16.04.1
- ubuntu/sgml-base 1.26 nmu4ubuntu1
- ubuntu/shared-mime-info 1.5-2ubuntu0.2
- ubuntu/software-properties-common 0.96.20.10
- ubuntu/systemd-sysv 229-4ubuntu21.31
- ubuntu/systemd 229-4ubuntu21.31
- ubuntu/sysv-rc 2.88dsf-59.3ubuntu2
- ubuntu/sysvinit-utils 2.88dsf-59.3ubuntu2
- ubuntu/tar 1.28-2.1ubuntu0.2
- ubuntu/ubuntu-keyring 2012.05.19.1
- ubuntu/ucf 3.0036
- ubuntu/unattended-upgrades 1.1ubuntu1.18.04.7~16.04.7
- ubuntu/util-linux 2.27.1-6ubuntu3.10
- ubuntu/wget 1.17.1-1ubuntu1.5
- ubuntu/xauth 1:1.0.9-1ubuntu2
- ubuntu/xdg-user-dirs 0.15-2ubuntu6.16.04.1
- ubuntu/xml-core 0.13 nmu2
- ubuntu/xz-utils 5.1.1alpha 20120614-2ubuntu2
- ubuntu/zlib1g-dev 1:1.2.8.dfsg-2ubuntu4.3
- ubuntu/zlib1g 1:1.2.8.dfsg-2ubuntu4.3
- tinydir 1.2.4