forest2000/seuratv5 : latest

Update Seurat to version 5

Latest release: almost 2 years ago - 28 downloads - 1,130 dependencies

Dependencies

@PKGNAME@ @PKGVERSION@
@PKGNAME@ @VERSION@
AnnotationDbi 1.60.2
AnnotationFilter 1.22.0
Azimuth 0.4.6.9004
BH 1.81.0-1
BPCells 0.1.0
BSgenome.Hsapiens.UCSC.hg38 1.4.5
BSgenome 1.66.3
Biobase 2.58.0
BiocFileCache 2.6.1
BiocGenerics 0.44.0
BiocIO 1.8.0
BiocManager 1.30.22
BiocParallel 1.32.6
BiocVersion 3.16.0
Biostrings 2.66.0
CNEr 1.34.0
DBI 1.1.3
DDRTree 0.1.5
DESeq2 1.38.3
DEoptimR 1.1-3
DT 0.30
DelayedArray 0.24.0
DelayedMatrixStats 1.20.0
DirichletMultinomial 1.40.0
EnsDb.Hsapiens.v86 2.99.0
FNN 1.1.3.2
GO.db 3.16.0
GenomeInfoDb 1.34.9
GenomeInfoDbData 1.2.9
GenomicAlignments 1.34.1
GenomicFeatures 1.50.4
GenomicRanges 1.50.2
HDF5Array 1.26.0
HSMMSingleCell 1.18.0
IRanges 2.32.0
JASPAR2020 0.99.10
KEGGREST 1.38.0
KernSmooth 2.23-16
KernSmooth 2.23-22
MASS 7.3-51.5
MASS 7.3-60
MAST 1.24.1
Matrix 1.2-18
Matrix 1.4-1
Matrix 1.6-1.1
MatrixGenerics 1.10.0
MatrixModels 0.5-2
ProtGenerics 1.30.0
R.methodsS3 1.8.2
R.oo 1.25.0
R.utils 2.12.2
R6 2.5.1
RANN 2.6.1
RBGL 1.74.0
RColorBrewer 1.1-3
RCurl 1.98-1.12
ROCR 1.0-11
RSQLite 2.3.1
RSpectra 0.16-1
RUnit 0.4.32
Rcpp 1.0.11
RcppAnnoy 0.0.21
RcppArmadillo 0.12.6.4.0
RcppEigen 0.3.3.9.3
RcppGSL 0.3.13
RcppGSLExample 0.0.3
RcppHNSW 0.5.0
RcppParallel 5.1.7
RcppProgress 0.4.2
RcppProgressArmadillo 0.2
RcppProgressETA 0.1
RcppProgressExample 0.2
RcppRoll 0.3.0
RcppTOML 0.2.2
RcppZiggurat 0.1.6
Rdpack 2.5
RdpackTester 1.0
Rfast2 0.1.5.1
Rfast 2.0.8
Rhdf5lib 1.20.0
RhpcBLASctl 0.23-42
Rhtslib 2.0.0
Rsamtools 2.14.0
Rtsne 0.16
S4Vectors 0.36.2
Seurat 4.9.9.9067
SeuratData 0.2.2.9001
SeuratDisk 0.0.0.9020
SeuratObject 4.9.9.9091
SeuratWrappers 0.3.19
Signac 1.11.9000
SingleCellExperiment 1.20.1
SparseM 1.81
SummarizedExperiment 1.28.0
TFBSTools 1.36.0
TFMPvalue 0.0.9
TFisher 0.2.0
TH.data 1.1-2
VGAM 1.1-9
WriteXLS 6.4.0
XML 3.99-0.14
XVector 0.38.0
abind 1.4-5
annotate 1.76.0
ape 5.7-1
askpass 1.2.0
base64enc 0.1-3
base 3.6.3
base 4.2.0
beachmat 2.14.2
beachtest 1.0.0
biocViews 1.66.2
biomaRt 2.54.1
bit64 4.0.5
bit 4.0.5
bitops 1.0-7
blob 1.2.4
boot 1.3-24
boot 1.3-28.1
bslib 0.5.1
caTools 1.18.2
cachem 1.0.8
cellranger 1.1.0
class 7.3-15
class 7.3-22
cli 3.6.1
clipr 0.8.0
cluster 2.1.0
cluster 2.1.4
codetools 0.2-16
codetools 0.2-19
colorspace 2.1-0
combinat 0.0-8
commonmark 1.9.0
compiler 3.6.3
compiler 4.2.0
cowplot 1.1.1
cpp11 0.4.6
crayon 1.5.2
credentials 2.0.1
crosstalk 1.2.0
curl 5.1.0
data.table 1.14.8
datasets 3.6.3
datasets 4.2.0
dbplyr 2.3.4
deldir 1.0-9
desc 1.4.2
digest 0.6.33
docopt 0.7.1
dotCall64 1.0-2
dplyr 1.1.3
dqrng 0.3.1
ellipsis 0.3.2
enrichR 3.2
ensembldb 2.22.0
estimate 1.0.13
evaluate 0.22
fansi 1.0.5
farver 2.1.1
fastDummies 1.7.3
fastICA 1.2-3
fastmap 1.1.1
fastmatch 1.1-4
filelock 1.0.2
fitdistrplus 1.1-11
fontawesome 0.5.2
foreign 0.8-75
foreign 0.8-85
formatR 1.14
fs 1.6.3
futile.logger 1.4.3
futile.options 1.0.1
future.apply 1.11.0
future 1.33.0
gargle 1.5.2
geneplotter 1.76.0
generics 0.1.3
gert 2.0.0
ggplot2 3.4.4
ggrepel 0.9.3
ggridges 0.5.4
gh 1.4.0
gitcreds 0.1.2
glmGamPoi 1.10.2
globals 0.16.2
glue 1.6.2
goftest 1.2-3
googledrive 2.1.1
googlesheets4 1.1.1
gplots 3.1.3
graphics 4.2.0
grDevices 3.6.3
grDevices 4.2.0
graph 1.76.0
graphics 3.6.3
grid 3.6.3
grid 4.2.0
gridExtra 2.3
gtable 0.3.4
gtools 3.9.4
harmony 1.0.3
hdf5r 1.3.8
here 1.0.1
hexbin 1.28.3
highr 0.10
hms 1.1.3
htmltools 0.5.6.1
htmlwidgets 1.6.2
httpuv 1.6.11
httr2 0.2.3
httr 1.4.7
ica 1.0-3
ids 1.0.1
igraph 1.5.1
ini 0.3.1
irlba 2.3.5.1
isoband 0.2.7
jquerylib 0.1.4
jsonlite 1.8.7
kernlab 0.9-32
knitr 1.44
labeling 0.4.3
lambda.r 1.2.4
later 1.3.1
lattice 0.20-40
lattice 0.21-9
lazyeval 0.2.2
leiden 0.4.3
leidenbase 0.1.25
lifecycle 1.0.3
limma 3.54.1
listenv 0.9.0
littler 0.3.18
lmtest 0.9-40
locfit 1.5-9.8
magrittr 2.0.3
mathjaxr 1.6-0
matrixStats 1.0.0
memoise 2.0.1
metap 1.9
methods 3.6.3
methods 4.2.0
mgcv 1.8-31
mgcv 1.9-0
mime 0.12
miniUI 0.1.1.1
mixtools 2.0.0
mnormt 2.1.1
monocle 2.26.0
morebeach 1.0.0
morebeachtests 1.0.0
multcomp 1.4-25
multtest 2.54.0
munsell 0.5.0
mutoss 0.1-13
mvtnorm 1.2-3
mvtnormAPI 1.0-0
nlme 3.1-144
nlme 3.1-163
nnet 7.3-13
nnet 7.3-19
numDeriv 2016.8-1.1
openssl 2.1.1
org.testing.db 0.1
parallel 3.6.3
parallel 4.2.0
parallelly 1.36.0
patchwork 1.1.3
pbapply 1.7-2
pheatmap 1.0.12
pillar 1.9.0
pkgconfig 2.0.3
plogr 0.2.0
plotly 4.10.2
plotrix 3.8-2
plyr 1.8.9
png 0.1-8
polyclip 1.10-6
poweRlaw 0.70.6
pracma 2.4.2
presto 1.0.0
prettyunits 1.2.0
progress 1.2.2
progressr 0.14.0
promises 1.2.1
proxy 0.4-27
purrr 1.0.2
qlcMatrix 0.9.7
qqconf 1.3.2
quantreg 5.97
rappdirs 0.3.3
rbibutils 2.2.15
readr 2.1.4
rematch2 2.1.2
rematch 2.0.0
remotes 2.4.2.1
reshape2 1.4.4
restfulr 0.0.15
reticulate 1.32.0
rgeos 0.6-4
rhdf5 2.42.1
rhdf5filters 1.10.1
rjson 0.2.21
rlang 1.1.1
rmarkdown 2.25
robustbase 0.99-0
rpart 4.1-15
rpart 4.1.21
rprojroot 2.0.3
rstudioapi 0.15.0
rsvd 1.0.5
rtracklayer 1.58.0
sandwich 3.0-2
sass 0.4.7
scales 1.2.1
scattermore 1.2
sctransform 0.4.0
segmented 1.6-4
seqLogo 1.64.0
shiny 1.7.5
shinyBS 0.61.1
shinydashboard 0.7.2
shinyjs 2.1.0
sitmo 2.0.2
slam 0.1-50
sn 2.1.1
snow 0.4-4
sourcetools 0.1.7-1
sp 2.1-0
spam 2.9-1
sparseMatrixStats 1.10.0
sparsesvd 0.2-2
spatial 7.3-11
spatial 7.3-17
spatstat.data 3.0-1
spatstat.explore 3.2-3
spatstat.geom 3.2-5
spatstat.random 3.1-6
spatstat.sparse 3.0-2
spatstat.utils 3.0-3
splines 3.6.3
splines 4.2.0
stats4 3.6.3
stats4 4.2.0
stats 3.6.3
stats 4.2.0
stringi 1.7.12
stringr 1.5.0
survival 3.1-8
survival 3.5-7
sys 3.4.2
tcltk 3.6.3
tcltk 4.2.0
tensor 1.5
testRcppAttributePackage 1.0
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
tibble 3.2.1
tidyr 1.3.0
tidyselect 1.2.0
tinytex 0.47
tools 3.6.3
tools 4.2.0
translations 3.6.3
translations 4.2.0
tzdb 0.4.0
usethis 2.2.2
utf8 1.2.3
utils 3.6.3
utils 4.2.0
uuid 1.1-1
uwot 0.1.16
vctrs 0.6.3
viridis 0.6.4
viridisLite 0.4.2
vroom 1.6.4
whisker 0.4.1
withr 2.5.1
xfun 0.40
xml2 1.3.5
xtable 1.8-4
yaml 2.3.7
zip 2.3.0
zlibbioc 1.44.0
zoo 1.8-12

bash 5.0.17

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forest2000/seuratv5 : latest

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