Ecosyste.ms: Docker

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fgualdr/env_gsea : latest

Debian GNU/Linux 11 (bullseye)

Latest release: over 1 year ago - 14 downloads - 566 dependencies

JSON

Dependencies

@PKGNAME@ @PKGVERSION@
@PKGNAME@ @VERSION@
AnnotationDbi 1.60.0
BH 1.81.0-1
BSgenome 1.66.3
Biobase 2.58.0
BiocFileCache 2.6.0
BiocGenerics 0.44.0
BiocIO 1.8.0
BiocParallel 1.32.5
Biostrings 2.66.0
Cairo 1.6-0
ComplexHeatmap 2.14.0
DBI 1.1.3
DESeq2 1.38.0
DOSE 3.24.0
DT 0.28
DelayedArray 0.24.0
FNN 1.1.3.2
FactoMineR 2.8
GO.db 3.16.0
GOSemSim 2.24.0
GSA 1.03.2
GSEABase 1.60.0
GenSA 1.1.9
GeneralNormalizer 0.0.0.9000
GenomeInfoDb 1.34.9
GenomeInfoDbData 1.2.9
GenomicAlignments 1.34.0
GenomicFeatures 1.50.2
GenomicRanges 1.50.0
GetoptLong 1.0.5
GlobalOptions 0.1.2
HDO.db 0.99.1
IRanges 2.32.0
KEGGREST 1.38.0
KernSmooth 2.23-22
MASS 7.3-60
Matrix 1.6-1
MatrixGenerics 1.10.0
MatrixModels 0.5-2
ModelMetrics 1.2.2.2
PTXQC 1.0.17
R6 2.5.1
R6P 0.3.0
RColorBrewer 1.1-3
RCurl 1.98-1.12
RSQLite 2.3.1
Rcpp 1.0.11
RcppAnnoy 0.0.21
RcppArmadillo 0.12.6.1.0
RcppEigen 0.3.3.9.3
RcppProgress 0.4.2
RcppProgressArmadillo 0.2
RcppProgressETA 0.1
RcppProgressExample 0.2
Rhtslib 2.0.0
Rsamtools 2.14.0
Rsubread 2.12.0
S4Vectors 0.36.0
SQUAREM 2021.1
SparseM 1.81
SummarizedExperiment 1.28.0
UpSetR 1.4.0
V8 4.3.0
XML 3.99-0.14
XVector 0.38.0
abind 1.4-5
ade4 1.7-22
annotate 1.76.0
ape 5.7-1
aplot 0.2.0
arrangements 1.1.9
askpass 1.1
assertthat 0.2.1
attempt 0.3.1
backports 1.4.1
base64enc 0.1-3
base 4.2.2
biomaRt 2.54.0
bit64 4.0.5
bit 4.0.5
bitops 1.0-7
blob 1.2.4
boot 1.3-28.1
brew 1.0-8
brio 1.1.3
broom 1.0.5
bslib 0.5.1
caTools 1.18.2
cachem 1.0.8
callr 3.7.3
car 3.1-2
carData 3.0-5
caret 6.0-94
cellranger 1.1.0
checkmate 2.2.0
circlize 0.4.15
class 7.3-22
cli 3.6.1
clipr 0.8.0
clock 0.7.0
clue 0.3-64
cluster 2.1.4
clusterProfiler 4.6.0
clustringr 1.0
codetools 0.2-19
collections 0.3.7
colorspace 2.1-0
commonmark 1.9.0
compiler 4.2.2
conflicted 1.2.0
conquer 1.3.3
corrplot 0.92
cowplot 1.1.1
cpp11 0.4.6
crayon 1.5.2
credentials 1.3.2
crosstalk 1.2.0
curl 4.3.3
data.table 1.14.8
datasets 4.2.2
dbplyr 2.3.3
desc 1.4.2
devtools 2.4.5
diagram 1.6.5
diffobj 0.3.5
digest 0.6.33
doParallel 1.0.17
downlit 0.4.3
downloader 0.4
dplyr 1.1.2
dqrng 0.3.0
dtplyr 1.3.1
e1071 1.7-13
edgeR 3.40.0
ellipse 0.5.0
ellipsis 0.3.2
emmeans 1.8.8
enrichplot 1.18.0
estimability 1.4.1
eulerr 7.0.0
evaluate 0.21
fansi 1.0.4
farver 2.1.1
fastmap 1.1.1
fastmatch 1.1-4
fgsea 1.24.0
filelock 1.0.2
fitdistrplus 1.1-11
flashClust 1.01-2
fontawesome 0.5.2
forcats 1.0.0
foreach 1.5.2
foreign 0.8-84
formatR 1.14
fs 1.6.3
futile.logger 1.4.3
futile.options 1.0.1
future.apply 1.11.0
future 1.33.0
gargle 1.5.2
gdata 2.19.0
genefilter 1.80.0
geneplotter 1.76.0
generics 0.1.3
genomation 1.30.0
gert 1.9.3
getopt 1.20.3
ggalluvial 0.10.0
ggchicklet 0.5.2
ggdendro 0.1.23
ggforce 0.4.1
ggfun 0.1.2
ggnewscale 0.4.9
ggplot2 3.4.3
ggplotify 0.1.2
ggpubr 0.6.0
ggraph 2.1.0
ggrepel 0.9.3
ggsci 3.0.0
ggsignif 0.6.4
ggtree 3.6.0
gh 1.4.0
gitcreds 0.1.2
globals 0.16.2
glue 1.6.2
gmp 0.7-2
googledrive 2.1.1
googlesheets4 1.1.1
gower 1.0.1
gplots 3.1.3
grDevices 4.2.2
graph 1.76.0
graphics 4.2.2
graphlayouts 1.0.0
grid 4.2.2
gridBase 0.4-7
gridExtra 2.3
gridGraphics 0.5-1
gson 0.1.0
gtable 0.3.4
gtools 3.9.4
hardhat 1.3.0
haven 2.5.3
highr 0.10
hms 1.1.3
htmlTable 2.4.1
htmltools 0.5.6
htmlwidgets 1.6.2
httpuv 1.6.11
httr2 0.2.3
httr 1.4.7
ids 1.0.1
igraph 1.5.1
impute 1.72.0
ini 0.3.1
ipred 0.9-14
irlba 2.3.5.1
isoband 0.2.7
iterators 1.0.14
iterpc 0.4.2
jquerylib 0.1.4
jsonlite 1.8.7
jsonvalidate 1.3.2
knitr 1.43
labeling 0.4.2
lambda.r 1.2.4
later 1.3.1
lattice 0.21-8
lava 1.7.2.1
lazyeval 0.2.2
leaps 3.1
lifecycle 1.0.3
limma 3.54.0
listenv 0.9.0
lme4 1.1-34
locfit 1.5-9.8
lsei 1.3-0
lubridate 1.9.2
magick 2.7.4
magrittr 2.0.3
maptools 1.1-8
matrixStats 1.0.0
memoise 2.0.1
methods 4.2.2
mgcv 1.9-0
mime 0.12
miniUI 0.1.1.1
minqa 1.2.5
mixsmsn 1.1-10
modelr 0.1.11
multcompView 0.1-9
munsell 0.5.0
mvtnorm 1.2-2
mvtnormAPI 1.0-0
nlme 3.1-163
nloptr 2.0.3
nnet 7.3-19
npsurv 0.5-0
numDeriv 2016.8-1.1
ontologyIndex 2.11
openssl 2.0.6
openxlsx 4.2.5.2
optparse 1.7.3
org.testing.db 0.1
pROC 1.18.4
parallel 4.2.2
parallelly 1.36.0
patchwork 1.1.3
pbkrtest 0.5.2
pillar 1.9.0
pixmap 0.4-12
pkgbuild 1.4.2
pkgconfig 2.0.3
pkgdown 2.0.7
pkgload 1.3.2.1
plogr 0.2.0
plotrix 3.8-2
plyr 1.8.8
png 0.1-8
polyclip 1.10-4
polylabelr 0.2.0
polynom 1.4-1
praise 1.0.0
prettyunits 1.1.1
processx 3.8.2
prodlim 2023.03.31
profvis 0.3.8
progress 1.2.2
progressr 0.14.0
promises 1.2.1
proxy 0.4-27
ps 1.7.5
purrr 1.0.2
quantreg 5.97
qvalue 2.30.0
ragg 1.2.5
rappdirs 0.3.3
rcmdcheck 1.4.0
readr 2.1.4
readxl 1.4.3
recipes 1.0.7
regioneR 1.30.0
rematch2 2.1.2
rematch 1.0.1
remotes 2.4.2.1
reprex 2.0.2
reshape2 1.4.4
restfulr 0.0.15
rio 0.5.29
rjson 0.2.21
rlang 1.1.1
rmarkdown 2.24
rmzqc 0.5.2
roxygen2 7.2.3
rpart 4.1.19
rprojroot 2.0.3
rstatix 0.7.2
rstudioapi 0.15.0
rtracklayer 1.58.0
rversions 2.1.2
rvest 1.0.3
sass 0.4.7
scales 1.2.1
scatterpie 0.2.1
scatterplot3d 0.3-44
segmented 1.6-4
selectr 0.4-2
seqPattern 1.30.0
seqinr 4.2-30
sessioninfo 1.2.2
shadowtext 0.1.2
shape 1.4.6
shiny 1.7.5
sitmo 2.0.2
snow 0.4-4
sourcetools 0.1.7-1
sp 2.0-0
splines 4.2.2
statmod 1.5.0
stats4 4.2.2
stats 4.2.2
stringdist 0.9.10
stringi 1.7.12
stringr 1.5.0
survival 3.5-7
sys 3.4.2
systemfonts 1.0.4
tcltk 4.2.2
testRcppAttributePackage 1.0
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
testthat 3.1.10
textshaping 0.3.6
tibble 3.2.1
tidygraph 1.2.3
tidyr 1.3.0
tidyselect 1.2.0
tidystringdist 0.1.4
tidytree 0.4.5
tidyverse 2.0.0
timeDate 4022.108
timechange 0.2.0
tinytex 0.46
tools 4.2.2
translations 4.2.2
treeio 1.22.0
tweenr 2.0.2
tzdb 0.4.0
urlchecker 1.0.1
usethis 2.2.2
utf8 1.2.3
utils 4.2.2
uuid 1.1-1
uwot 0.1.16
vctrs 0.6.3
viridis 0.6.4
viridisLite 0.4.2
vroom 1.6.3
waldo 0.5.1
wesanderson 0.3.6
whisker 0.4.1
withr 2.5.0
xfun 0.40
xml2 1.3.3
xopen 1.0.0
xtable 1.8-4
yaml 2.3.7
yulab.utils 0.0.8
zip 2.3.0
zlibbioc 1.44.0

debian/adduser 3.118
debian/apt 2.2.4
debian/base-files 11.1 deb11u7
debian/base-passwd 3.5.51
debian/bash 5.1-2 deb11u1
debian/bsdutils 1:2.36.1-8 deb11u1
debian/bzip2 1.0.8-4
debian/ca-certificates 20210119
debian/coreutils 8.32-4 b1
debian/dash 0.5.11 git20200708 dd9ef66-5
debian/debconf 1.5.77
debian/debian-archive-keyring 2021.1.1 deb11u1
debian/debianutils 4.11.2
debian/diffutils 1:3.7-5
debian/dpkg 1.20.12
debian/e2fsprogs 1.46.2-2
debian/findutils 4.8.0-1
debian/gcc-10-base 10.2.1-6
debian/gcc-9-base 9.3.0-22
debian/git-man 1:2.30.2-1 deb11u2
debian/git 1:2.30.2-1 deb11u2
debian/gpgv 2.2.27-2 deb11u2
debian/grep 3.6-1 deb11u1
debian/gzip 1.10-4 deb11u1
debian/hostname 3.23
debian/init-system-helpers 1.60
debian/libacl1 2.2.53-10
debian/libapr1 1.7.0-6 deb11u2
debian/libaprutil1 1.6.1-5 deb11u1
debian/libapt-pkg6.0 2.2.4
debian/libattr1 1:2.4.48-6
debian/libaudit-common 1:3.0-2
debian/libaudit1 1:3.0-2
debian/libblkid1 2.36.1-8 deb11u1
debian/libbrotli1 1.0.9-2 b2
debian/libbsd0 0.11.3-1
debian/libbz2-1.0 1.0.8-4
debian/libc-bin 2.31-13 deb11u6
debian/libc6 2.31-13 deb11u6
debian/libcap-ng0 0.7.9-2.2 b1
debian/libcbor0 0.5.0 dfsg-2
debian/libcom-err2 1.46.2-2
debian/libcrypt1 1:4.4.18-4
debian/libcurl3-gnutls 7.74.0-1.3 deb11u7
debian/libdb5.3 5.3.28 dfsg1-0.8
debian/libdebconfclient0 0.260
debian/libedit2 3.1-20191231-2 b1
debian/liberror-perl 0.17029-1
debian/libexpat1 2.2.10-2 deb11u5
debian/libext2fs2 1.46.2-2
debian/libffi7 3.3-6
debian/libfido2-1 1.6.0-2
debian/libgcc-s1 10.2.1-6
debian/libgcrypt20 1.8.7-6
debian/libgdbm-compat4 1.19-2
debian/libgdbm6 1.19-2
debian/libglib2.0-0 2.66.8-1
debian/libgmp10 2:6.2.1 dfsg-1 deb11u1
debian/libgnutls30 3.7.1-5 deb11u3
debian/libgpg-error0 1.38-2
debian/libgssapi-krb5-2 1.18.3-6 deb11u3
debian/libhogweed6 3.7.3-1
debian/libice6 2:1.0.10-1
debian/libidn2-0 2.3.0-5
debian/libk5crypto3 1.18.3-6 deb11u3
debian/libkeyutils1 1.6.1-2
debian/libkrb5-3 1.18.3-6 deb11u3
debian/libkrb5support0 1.18.3-6 deb11u3
debian/libldap-2.4-2 2.4.57 dfsg-3 deb11u1
debian/liblz4-1 1.9.3-2
debian/liblzma5 5.2.5-2.1~deb11u1
debian/libmd0 1.0.3-3
debian/libmount1 2.36.1-8 deb11u1
debian/libmpdec3 2.5.1-1
debian/libncurses6 6.2 20201114-2 deb11u1
debian/libncursesw6 6.2 20201114-2 deb11u1
debian/libnettle8 3.7.3-1
debian/libnghttp2-14 1.43.0-1
debian/libnsl2 1.3.0-2
debian/libp11-kit0 0.23.22-1
debian/libpam-modules-bin 1.4.0-9 deb11u1
debian/libpam-modules 1.4.0-9 deb11u1
debian/libpam-runtime 1.4.0-9 deb11u1
debian/libpam0g 1.4.0-9 deb11u1
debian/libpcre2-8-0 10.36-2 deb11u1
debian/libpcre3 2:8.39-13
debian/libperl5.32 5.32.1-4 deb11u2
debian/libprocps8 2:3.3.17-5
debian/libpsl5 0.21.0-1.2
debian/libpython3-stdlib 3.9.2-3
debian/libpython3.9-minimal 3.9.2-1
debian/libpython3.9-stdlib 3.9.2-1
debian/libreadline8 8.1-1
debian/librtmp1 2.4 20151223.gitfa8646d.1-2 b2
debian/libsasl2-2 2.1.27 dfsg-2.1 deb11u1
debian/libsasl2-modules-db 2.1.27 dfsg-2.1 deb11u1
debian/libseccomp2 2.5.1-1 deb11u1
debian/libselinux1 3.1-3
debian/libsemanage-common 3.1-1
debian/libsemanage1 3.1-1 b2
debian/libsepol1 3.1-1
debian/libserf-1-1 1.3.9-10
debian/libsm6 2:1.2.3-1
debian/libsmartcols1 2.36.1-8 deb11u1
debian/libsqlite3-0 3.34.1-3
debian/libss2 1.46.2-2
debian/libssh2-1 1.9.0-2
debian/libssl1.1 1.1.1n-0 deb11u5
debian/libstdc 6 10.2.1-6
debian/libsvn1 1.14.1-3 deb11u1
debian/libsystemd0 247.3-7 deb11u2
debian/libtasn1-6 4.16.0-2 deb11u1
debian/libtinfo6 6.2 20201114-2 deb11u1
debian/libtirpc-common 1.3.1-1 deb11u1
debian/libtirpc3 1.3.1-1 deb11u1
debian/libudev1 247.3-7 deb11u2
debian/libunistring2 0.9.10-4
debian/libutf8proc2 2.5.0-1
debian/libuuid1 2.36.1-8 deb11u1
debian/libx11-6 2:1.7.2-1 deb11u1
debian/libx11-data 2:1.7.2-1 deb11u1
debian/libxau6 1:1.0.9-1
debian/libxcb1 1.14-3
debian/libxdmcp6 1:1.1.2-3
debian/libxext6 2:1.3.3-1.1
debian/libxrender1 1:0.9.10-1
debian/libxxhash0 0.8.0-2
debian/libzstd1 1.4.8 dfsg-2.1
debian/login 1:4.8.1-1
debian/logsave 1.46.2-2
debian/lsb-base 11.1.0
debian/mawk 1.3.4.20200120-2
debian/media-types 4.0.0
debian/mercurial-common 5.6.1-4
debian/mercurial 5.6.1-4
debian/mount 2.36.1-8 deb11u1
debian/ncurses-base 6.2 20201114-2 deb11u1
debian/ncurses-bin 6.2 20201114-2 deb11u1
debian/openssh-client 1:8.4p1-5 deb11u1
debian/openssl 1.1.1n-0 deb11u5
debian/passwd 1:4.8.1-1
debian/perl-base 5.32.1-4 deb11u2
debian/perl-modules-5.32 5.32.1-4 deb11u2
debian/perl 5.32.1-4 deb11u2
debian/procps 2:3.3.17-5
debian/python3-minimal 3.9.2-3
debian/python3.9-minimal 3.9.2-1
debian/python3.9 3.9.2-1
debian/python3 3.9.2-3
debian/readline-common 8.1-1
debian/sed 4.7-1
debian/sensible-utils 0.0.14
debian/subversion 1.14.1-3 deb11u1
debian/sysvinit-utils 2.96-7 deb11u1
debian/tar 1.34 dfsg-1
debian/tzdata 2021a-1 deb11u10
debian/ucf 3.0043
debian/util-linux 2.36.1-8 deb11u1
debian/wget 1.21-1 deb11u1
debian/x11-common 1:7.7 22
debian/zlib1g 1:1.2.11.dfsg-2 deb11u2

python 3.11.4

bootstrap-accessibility-plugin 1.0.6
bootstrap-colorpicker 3.4.0
bootstrap-sass 3.4.1
bootstrap 4.6.0
bootstrap 5.2.2
bootswatch 3.4.1
bootswatch 4.6.0
bootswatch 5.2.2

flask 1.1.1