entsupml/r-with-libraries : latest

Latest release: over 3 years ago - 137 downloads - 992 dependencies

JSON

Dependencies

bslib 0.4.1
@PKGNAME@ @VERSION@
AlgDesign 1.2.1
AnnotationDbi 1.60.0
BH 1.78.0-0
Biobase 2.58.0
BiocFileCache 2.6.0
BiocGenerics 0.44.0
BiocManager 1.30.19
BiocParallel 1.32.5
BiocSingular 1.14.0
BiocVersion 3.16.0
Biostrings 2.66.0
ComplexHeatmap 2.14.0
DBI 1.1.3
DESeq2 1.38.2
DT 0.26
DelayedArray 0.24.0
DelayedMatrixStats 1.20.0
GSEABase 1.60.0
GSVA 1.46.0
GenomeInfoDb 1.34.6
GenomeInfoDbData 1.2.9
GenomicRanges 1.50.2
GetoptLong 1.0.5
GlobalOptions 0.1.2
HDF5Array 1.26.0
IRanges 2.32.0
KEGGREST 1.38.0
KMsurv 0.1-5
KernSmooth 2.23-20
MASS 7.3-58.1
Matrix 1.5-1
MatrixGenerics 1.10.0
MatrixModels 0.5-1
R6 2.5.1
RColorBrewer 1.1-3
RCurl 1.98-1.9
RSQLite 2.2.20
Rcpp 1.0.9
RcppArmadillo 0.11.4.2.1
RcppEigen 0.3.3.9.3
Rhdf5lib 1.20.0
S4Vectors 0.36.1
ScaledMatrix 1.6.0
SingleCellExperiment 1.20.0
SparseM 1.81
SummarizedExperiment 1.28.0
V8 4.2.2
XML 3.99-0.13
XVector 0.38.0
abind 1.4-5
annotate 1.76.0
askpass 1.1
assertthat 0.2.1
backports 1.4.1
base64enc 0.1-3
base 4.2.2
beachmat 2.14.0
beachtest 1.0.0
biomaRt 2.54.0
bit64 4.0.5
bit 4.0.5
bitops 1.0-7
blob 1.2.3
cachem 1.0.6
callr 3.7.3
car 3.1-1
circlize 0.4.15
carData 3.0-5
cellranger 1.1.0
choiceDes 0.9-3
boot 1.3-28
brio 1.1.3
broom 1.0.3
class 7.3-20
cli 3.4.1
clipr 0.8.0
clue 0.3-63
cluster 2.1.4
codetools 0.2-18
colorspace 2.0-3
commonmark 1.8.1
compiler 4.2.2
corrplot 0.92
cowplot 1.1.1
cpp11 0.4.3
crayon 1.5.2
crosstalk 1.2.0
curl 4.3.3
data.table 1.14.6
datasets 4.2.2
dbplyr 2.2.1
desc 1.4.2
diffobj 0.3.5
digest 0.6.30
doParallel 1.0.17
docopt 0.7.1
downlit 0.4.2
dplyr 1.0.10
dtplyr 1.2.2
dygraphs 1.1.1.6
edgeR 3.40.2
ellipsis 0.3.2
evaluate 0.17
exactRankTests 0.8-35
fansi 1.0.3
farver 2.1.1
fastmap 1.1.0
fastmatch 1.1-3
fgsea 1.24.0
filelock 1.0.2
fontawesome 0.4.0
forcats 1.0.0
foreach 1.5.2
foreign 0.8-83
formatR 1.13
fs 1.5.2
futile.logger 1.4.3
futile.options 1.0.1
gargle 1.3.0
geneplotter 1.76.0
generics 0.1.3
ggdendro 0.1.23
ggplot2 3.4.0
ggpubr 0.5.0
ggrepel 0.9.2
ggsci 2.9
ggsignif 0.6.4
ggtext 0.1.2
glue 1.6.2
googledrive 2.0.0
googlesheets4 1.0.1
grDevices 4.2.2
graph 1.76.0
graphics 4.2.2
grid 4.2.2
gridExtra 2.3
gridtext 0.1.5
gtable 0.3.1
haven 2.5.1
highr 0.9
hms 1.1.2
htmltools 0.5.4
htmlwidgets 1.6.1
httpuv 1.6.6
httr 1.4.4
ids 1.0.1
irlba 2.3.5.1
isoband 0.2.7
iterators 1.0.14
janitor 2.2.0
jpeg 0.1-10
jquerylib 0.1.4
jsonlite 1.8.3
katex 1.4.1
km.ci 0.5-6
knitr 1.40
labeling 0.4.2
lambda.r 1.2.4
later 1.3.0
lattice 0.20-45
lazyeval 0.2.2
lifecycle 1.0.3
limma 3.54.1
linkXTS 1.0
littler 0.3.17
lme4 1.1-31
locfit 1.5-9.7
lubridate 1.9.1
magrittr 2.0.3
markdown 1.5
matrixStats 0.63.0
maxstat 0.7-25
memoise 2.0.1
methods 4.2.2
mgcv 1.8-41
mime 0.12
minqa 1.2.5
modelr 0.1.10
morebeach 1.0.0
morebeachtests 1.0.0
munsell 0.5.0
mvtnorm 1.1-3
mvtnormAPI 1.0-0
nlme 3.1-160
nloptr 2.0.3
nnet 7.3-18
numDeriv 2016.8-1.1
openssl 2.0.5
org.Hs.eg.db 3.16.0
org.testing.db 0.1
pROC 1.18.0
packrat 0.9.0
parallel 4.2.2
pbkrtest 0.5.2
pheatmap 1.0.12
pillar 1.8.1
pkgconfig 2.0.3
pkgload 1.3.2
plogr 0.2.0
plotly 4.10.1
plyr 1.8.8
png 0.1-8
polynom 1.4-1
praise 1.0.0
prettyunits 1.1.1
processx 3.8.0
progress 1.2.2
promises 1.2.0.1
ps 1.7.2
purrr 1.0.1
quantreg 5.94
randomForest 4.7-1.1
rappdirs 0.3.3
readr 2.1.3
readxl 1.4.1
rematch2 2.1.2
rematch 1.0.1
renv 0.16.0
reprex 2.0.2
reshape2 1.4.4
reshape 0.8.9
rhdf5 2.42.0
rhdf5filters 1.10.0
rjson 0.2.21
rlang 1.0.6
rmarkdown 2.19
rpart 4.1.19
rprojroot 2.0.3
rsconnect 0.8.29
rstatix 0.7.2
rstudioapi 0.14
rsvd 1.0.5
rvest 1.0.3
sass 0.4.2
scales 1.2.1
selectr 0.4-2
shape 1.4.6
shiny 1.7.3
singscore 1.18.0
snakecase 0.11.0
snow 0.4-4
sourcetools 0.1.7
sparseMatrixStats 1.10.0
spatial 7.3-15
splines 4.2.2
stats4 4.2.2
stats 4.2.2
stringi 1.7.8
stringr 1.5.0
survMisc 0.5.6
survival 3.4-0
survminer 0.4.9
sys 3.4.1
tcltk 4.2.2
testRcppAttributePackage 1.0
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
testthat 3.1.6
tibble 3.1.8
tidyr 1.3.0
tidyselect 1.2.0
tidyverse 1.3.2
timechange 0.2.0
tinytex 0.43
tools 4.2.2
translations 4.2.2
tufte 0.12
tzdb 0.3.0
utf8 1.2.2
utils 4.2.2
uuid 1.1-0
vctrs 0.5.2
viridis 0.6.2
viridisLite 0.4.1
vroom 1.6.1
waldo 0.4.0
withr 2.5.0
xfun 0.37
xml2 1.3.3
xtable 1.8-4
xts 0.12.2
yaml 2.3.6
zlibbioc 1.44.0
zoo 1.8-11

ubuntu/adduser 3.118ubuntu5
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ubuntu/bsdutils 1:2.37.2-4ubuntu3
ubuntu/ca-certificates-java 20190909
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ubuntu/linux-libc-dev 5.15.0-52.58
ubuntu/lmodern 2.004.5-6.1
ubuntu/locales 2.35-0ubuntu3.1
ubuntu/login 1:4.8.1-2ubuntu2
ubuntu/logsave 1.46.5-2ubuntu1.1
ubuntu/lsb-base 11.1.0ubuntu4
ubuntu/lsb-release 11.1.0ubuntu4
ubuntu/make 4.3-4.1build1
ubuntu/mawk 1.3.4.20200120-3
ubuntu/media-types 7.0.0
ubuntu/mount 2.37.2-4ubuntu3
ubuntu/ncurses-base 6.3-2
ubuntu/ncurses-bin 6.3-2
ubuntu/ocaml-base 4.13.1-3ubuntu1
ubuntu/openjdk-11-jre-headless 11.0.16 8-0ubuntu1~22.04
ubuntu/openssh-client 1:8.9p1-3ubuntu0.1
ubuntu/openssl 3.0.2-0ubuntu1.7
ubuntu/pandoc 2.19.2-1
ubuntu/passwd 1:4.8.1-2ubuntu2
ubuntu/patch 2.7.6-7build2
ubuntu/perl-base 5.34.0-3ubuntu1.1
ubuntu/perl-modules-5.34 5.34.0-3ubuntu1.1
ubuntu/perl 5.34.0-3ubuntu1.1
ubuntu/pkg-config 0.29.2-1ubuntu3
ubuntu/preview-latex-style 12.2-1ubuntu1
ubuntu/procps 2:3.3.17-6ubuntu2
ubuntu/python-apt-common 2.3.0ubuntu2.1
ubuntu/python3-apt 2.3.0ubuntu2.1
ubuntu/python3-chardet 4.0.0-1
ubuntu/python3-debian 0.1.43ubuntu1
ubuntu/python3-distutils 3.10.6-1~22.04
ubuntu/python3-lib2to3 3.10.6-1~22.04
ubuntu/python3-minimal 3.10.6-1~22.04
ubuntu/python3-pkg-resources 59.6.0-1.2
ubuntu/python3.10-minimal 3.10.6-1~22.04
ubuntu/python3.10 3.10.6-1~22.04
ubuntu/python3 3.10.6-1~22.04
ubuntu/readline-common 8.1.2-1
ubuntu/rpcsvc-proto 1.4.2-0ubuntu6
ubuntu/sed 4.8-1ubuntu2
ubuntu/sensible-utils 0.0.17
ubuntu/shiny-server 1.5.19.996
ubuntu/sudo 1.9.9-1ubuntu2.1
ubuntu/sysvinit-utils 3.01-1ubuntu1
ubuntu/tar 1.34 dfsg-1build3
ubuntu/tcl8.6 8.6.12 dfsg-1build1
ubuntu/tex-common 6.17
ubuntu/tk8.6 8.6.12-1build1
ubuntu/tzdata 2022e-0ubuntu0.22.04.0
ubuntu/ubuntu-keyring 2021.03.26
ubuntu/ucf 3.0043
ubuntu/unzip 6.0-26ubuntu3.1
ubuntu/usrmerge 25ubuntu2
ubuntu/util-linux 2.37.2-4ubuntu3
ubuntu/uuid-dev 2.37.2-4ubuntu3
ubuntu/wget 1.21.2-2ubuntu1
ubuntu/x11-common 1:7.7 23ubuntu2
ubuntu/x11proto-dev 2021.5-1
ubuntu/xauth 1:1.1-1build2
ubuntu/xfonts-utils 1:7.7 6build2
ubuntu/xorg-sgml-doctools 1:1.11-1.1
ubuntu/xtail 2.1-8
ubuntu/xtrans-dev 1.4.0-1
ubuntu/zip 3.0-12build2
ubuntu/zlib1g-dev 1:1.2.11.dfsg-2ubuntu9.2
ubuntu/zlib1g 1:1.2.11.dfsg-2ubuntu9.2
ubuntu/zstd 1.4.8 dfsg-3build1

color-convert 2.0.1
clone 1.0.4
cmd-shim 4.1.0
@gar/promisify 1.1.2
@isaacs/string-locale-compare 1.1.0
@npmcli/arborist 4.2.0
@npmcli/ci-detect 1.4.0
@npmcli/config 2.4.0
@npmcli/disparity-colors 1.0.1
@npmcli/fs 1.0.0
@npmcli/git 2.1.0
@npmcli/installed-package-contents 1.0.7
@npmcli/map-workspaces 2.0.0
@npmcli/metavuln-calculator 2.0.0
@npmcli/move-file 1.1.2
@npmcli/name-from-folder 1.0.1
@npmcli/node-gyp 1.0.3
@npmcli/package-json 1.0.1
@npmcli/promise-spawn 1.3.2
@npmcli/run-script 2.0.0
@tootallnate/once 1.1.2
1to2 1.0.0
abbrev 1.1.1
accepts 1.3.7
agent-base 6.0.2
agentkeepalive 4.2.0
aggregate-error 3.1.0
ansi-regex 2.1.1
ansi-regex 3.0.0
ansi-regex 5.0.0
ansi-regex 5.0.1
ansi-styles 4.3.0
ansicolors 0.3.2
ansistyles 0.1.3
aproba 2.0.0
archy 1.0.0
are-we-there-yet 2.0.0
array-flatten 1.1.1
asap 2.0.6
balanced-match 1.0.2
bash 0.0.1
basic-auth 2.0.1
bin-links 2.3.0
binary-extensions 2.2.0
body-parser 1.19.1
bootstrap-accessibility-plugin 1.0.6
bootstrap-colorpicker 3.4.0
bootstrap-sass 3.4.1
bootstrap 4.6.0
bootstrap 5.1.3
bootswatch 3.4.1
bootswatch 4.6.0
bootswatch 5.1.3
brace-expansion 1.1.11
builtins 1.0.3
bytes 3.0.0
bytes 3.1.1
cacache 15.3.0
call-bind 1.0.2
chalk 4.1.2
chownr 2.0.0
cidr-regex 3.1.1
clean-stack 2.2.0
cli-columns 4.0.0
cli-table3 0.6.0
client-sessions 0.8.0
color-name 1.1.4
color-support 1.1.3
colors 1.4.0
columnify 1.5.4
common-ancestor-path 1.0.1
compressible 2.0.18
compression 1.7.4
concat-map 0.0.1
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content-disposition 0.5.4
content-type 1.0.4
cookie-signature 1.0.6
cookie 0.4.1
cookies 0.7.3
corepack 0.10.0
date-format 4.0.3
debug 2.6.9
debug 3.2.7
debug 4.3.2
debug 4.3.3
debuglog 1.0.1
defaults 1.0.3
delegates 1.0.0
depd 1.1.2
depd 2.0.0
destroy 1.0.4
dezalgo 1.0.3
diff 5.0.0
ee-first 1.1.1
emoji-regex 8.0.0
encodeurl 1.0.2
encoding 0.1.13
env-paths 2.2.1
err-code 2.0.3
escape-html 1.0.3
etag 1.8.1
eventemitter3 4.0.4
eventsource 1.1.0
express 4.17.2
fastest-levenshtein 1.0.12
faye-websocket 0.11.4
finalhandler 1.1.2
flatted 3.2.5
follow-redirects 1.14.8
forwarded 0.2.0
fresh 0.5.2
fs-extra 10.0.0
fs-minipass 2.1.0
fs.realpath 1.0.0
function-bind 1.1.1
gauge 4.0.0
get-intrinsic 1.1.1
glob 7.2.0
graceful-fs 4.2.8
graceful-fs 4.2.9
handlebars 4.7.7
has-flag 4.0.0
has-symbols 1.0.2
has-unicode 2.0.1
has 1.0.3
hosted-git-info 4.1.0
http-cache-semantics 4.1.0
http-errors 1.8.1
http-parser-js 0.5.3
http-proxy-agent 4.0.1
http-proxy 1.18.1
https-proxy-agent 5.0.0
humanize-ms 1.2.1
iconv-lite 0.4.24
iconv-lite 0.6.3
ignore-walk 4.0.1
imurmurhash 0.1.4
indent-string 4.0.0
infer-owner 1.0.4
inflight 1.0.6
inherits 2.0.4
ini 2.0.0
init-package-json 2.0.5
ip-address 8.1.0
ip-regex 4.3.0
ip 1.1.5
ipaddr.js 1.9.1
is-cidr 4.0.2
is-core-module 2.8.0
is-fullwidth-code-point 2.0.0
is-fullwidth-code-point 3.0.0
is-lambda 1.0.1
is-typedarray 1.0.0
isexe 2.0.0
jsbn 1.1.0
json-parse-even-better-errors 2.3.1
json-stringify-nice 1.1.4
json3 3.3.3
jsonfile 6.1.0
jsonparse 1.3.1
just-diff-apply 4.0.1
just-diff 5.0.1
keygrip 1.0.3
libnpmaccess 5.0.0
libnpmdiff 3.0.0
libnpmexec 3.0.2
libnpmfund 2.0.2
libnpmhook 7.0.0
libnpmorg 3.0.0
libnpmpack 3.0.1
libnpmpublish 5.0.0
libnpmsearch 4.0.0
libnpmteam 3.0.0
libnpmversion 2.0.2
log4js 6.4.1
lru-cache 6.0.0
make-fetch-happen 9.1.0
media-typer 0.3.0
merge-descriptors 1.0.1
methods 1.1.2
mime-db 1.44.0
mime-types 2.1.27
mime 1.6.0
minimatch 3.0.4
minimist 1.2.5
minipass-collect 1.0.2
minipass-fetch 1.4.1
minipass-flush 1.0.5
minipass-json-stream 1.0.1
minipass-pipeline 1.2.4
minipass-sized 1.0.3
minipass 3.1.6
minizlib 2.1.2
mkdirp-infer-owner 2.0.0
mkdirp 1.0.4
moment 2.29.1
morgan 1.10.0
ms 2.0.0
ms 2.1.2
ms 2.1.3
mute-stream 0.0.8
nan 2.15.0
negotiator 0.6.2
neo-async 2.6.2
node-gyp 8.4.1
nopt 5.0.0
normalize-package-data 3.0.3
npm-audit-report 2.1.5
npm-bundled 1.1.2
npm-init 0.0.0
npm-install-checks 4.0.0
npm-normalize-package-bin 1.0.1
npm-package-arg 8.1.5
npm-packlist 3.0.0
npm-pick-manifest 6.1.1
npm-profile 5.0.4
npm-registry-fetch 11.0.0
npm-user-validate 1.0.1
npm 8.3.1
npmlog 6.0.0
object-assign 4.1.1
object-inspect 1.10.3
on-finished 2.3.0
on-headers 1.0.2
once 1.4.0
opener 1.5.2
optimist 0.6.1
original 1.0.2
p-map 4.0.0
pacote 12.0.2
parse-conflict-json 2.0.1
parseurl 1.3.3
path-is-absolute 1.0.1
path-to-regexp 0.1.7
pause 0.1.0
pinkyswear 2.2.3
proc-log 1.0.0
promise-all-reject-late 1.0.1
promise-call-limit 1.0.1
promise-inflight 1.0.1
promise-retry 2.0.1
promzard 0.3.0
proxy-addr 2.0.7
q 1.5.1
qrcode-terminal 0.12.0
qs 6.10.3
qs 6.9.6
querystringify 2.2.0
range-parser 1.2.1
raw-body 2.4.2
read-cmd-shim 2.0.0
read-package-json-fast 2.0.3
read-package-json 4.1.1
read 1.0.7
readable-stream 3.6.0
readdir-scoped-modules 1.1.0
requires-port 1.0.0
retry 0.12.0
rfdc 1.3.0
rimraf 3.0.2
safe-buffer 5.1.2
safe-buffer 5.2.1
safer-buffer 2.1.2
semver 7.3.5
send 0.17.2
serve-static 1.14.2
set-blocking 2.0.0
setprototypeof 1.2.0
shiny-server-client 1.2.0
shiny-server 1.5.19
side-channel 1.0.4
signal-exit 3.0.6
smart-buffer 4.2.0
sockjs-client 1.5.2
sockjs 0.3.24
socks-proxy-agent 6.1.0
socks 2.6.1
source-map 0.6.1
spdx-correct 3.1.1
spdx-exceptions 2.3.0
spdx-expression-parse 3.0.1
spdx-license-ids 3.0.10
split 1.0.1
sprintf-js 1.1.2
ssri 8.0.1
stable 0.1.8
statuses 1.5.0
streamroller 3.0.2
string-width 2.1.1
string-width 4.2.2
string-width 4.2.3
string_decoder 1.3.0
stringify-package 1.0.1
strip-ansi 3.0.1
strip-ansi 4.0.0
strip-ansi 6.0.0
strip-ansi 6.0.1
supports-color 7.2.0
tar 6.1.11
text-table 0.2.0
through 2.3.8
tiny-relative-date 1.3.0
toidentifier 1.0.1
treeverse 1.0.4
type-is 1.6.18
typedarray-to-buffer 3.1.5
uglify-js 3.13.6
underscore 1.13.2
unique-filename 1.1.1
unique-slug 2.0.2
universalify 2.0.0
unpipe 1.0.0
url-parse 1.5.10
util-deprecate 1.0.2
utils-merge 1.0.1
uuid 8.3.2
validate-npm-package-license 3.0.4
validate-npm-package-name 3.0.0
vary 1.1.2
walk-up-path 1.0.0
wcwidth 1.0.1
websocket-driver 0.7.4
websocket-extensions 0.1.4
which 2.0.2
wide-align 1.1.3
wordwrap 0.0.3
wordwrap 1.0.0
wrappy 1.0.2
write-file-atomic 3.0.3
yallist 4.0.0

bash 5.1.16
python 3.9.11

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actions/checkout v2
actions/setup-node v1
actions/setup-node v2
actions/setup-python v2
coverallsapp/github-action master
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