duclare123/vizcnv_dev : latest

Visualization tool for WGS analysis

Latest release: over 3 years ago - 212 downloads - 920 dependencies

JSON

Dependencies

@PKGNAME@ @PKGVERSION@
@PKGNAME@ @VERSION@
AnnotationDbi 1.60.2
BH 1.81.0-1
BSgenome 1.66.3
Biobase 2.58.0
BiocFileCache 2.6.1
BiocGenerics 0.44.0
BiocIO 1.8.0
BiocManager 1.30.20
BiocParallel 1.32.6
BiocVersion 3.16.0
Biostrings 2.66.0
DBI 1.1.3
DNAcopy 1.72.3
DT 0.27
DelayedArray 0.24.0
GenomeInfoDb 1.34.9
GenomeInfoDbData 1.2.9
GenomicAlignments 1.34.1
GenomicFeatures 1.50.4
GenomicRanges 1.50.2
IRanges 2.32.0
KEGGREST 1.38.0
KernSmooth 2.23-20
MASS 7.3-58.2
Matrix 1.5-3
MatrixGenerics 1.10.0
R.methodsS3 1.8.2
R.oo 1.25.0
R.utils 2.12.2
R6 2.5.1
RColorBrewer 1.1-3
RCurl 1.98-1.12
RSQLite 2.3.1
Rcpp 1.0.10
Rhtslib 2.0.0
Rsamtools 2.14.0
S4Vectors 0.36.2
SLMSeg 1.0
SummarizedExperiment 1.28.0
VariantAnnotation 1.44.1
VennDiagram 1.7.3
XML 3.99-0.14
XVector 0.38.0
anytime 0.3.9
arrow 13.0.0
askpass 1.1
assertthat 0.2.1
base64enc 0.1-3
base 4.2.3
bedr 1.0.7
biomaRt 2.54.1
bit64 4.0.5
bit 4.0.5
bitops 1.0-7
blob 1.2.4
boot 1.3-28.1
brew 1.0-8
brio 1.1.3
bs4Dash 2.2.1
bslib 0.4.2
cachem 1.0.7
callr 3.7.3
class 7.3-21
cli 3.6.1
clipr 0.8.0
cluster 2.1.4
codetools 0.2-19
colorspace 2.1-0
colourpicker 1.2.0
commonmark 1.9.0
compiler 4.2.3
cowplot 1.1.1
cpp11 0.4.3
crayon 1.5.2
credentials 1.3.2
crosstalk 1.2.0
curl 5.0.0
data.table 1.14.8
datasets 4.2.3
dbplyr 2.3.2
desc 1.4.2
devtools 2.4.5
diffobj 0.3.5
digest 0.6.31
docopt 0.7.1
downlit 0.4.2
dplyr 1.1.1
ellipsis 0.3.2
evaluate 0.20
fansi 1.0.4
farver 2.1.1
fastmap 1.1.1
filelock 1.0.2
fontawesome 0.5.1
foreign 0.8-84
formatR 1.14
fresh 0.2.0
fs 1.6.1
futile.logger 1.4.3
futile.options 1.0.1
generics 0.1.3
gert 1.9.2
ggplot2 3.4.2
ggrepel 0.9.3
ggtranscript 0.99.9
gh 1.4.0
gitcreds 0.1.2
glue 1.6.2
grDevices 4.2.3
graphics 4.2.3
grid 4.2.3
gtable 0.3.3
here 1.0.1
highr 0.10
hms 1.1.3
htmltools 0.5.5
htmlwidgets 1.6.2
httpuv 1.6.9
httr2 0.2.2
httr 1.4.5
ini 0.3.1
isoband 0.2.7
jquerylib 0.1.4
jsonlite 1.8.4
knitr 1.42
labeling 0.4.2
lambda.r 1.2.4
later 1.3.0
lattice 0.20-45
lazyeval 0.2.2
lifecycle 1.0.3
littler 0.3.18
magrittr 2.0.3
matrixStats 0.63.0
memoise 2.0.1
methods 4.2.3
mgcv 1.8-42
mime 0.12
miniUI 0.1.1.1
munsell 0.5.0
nlme 3.1-162
nnet 7.3-18
openssl 2.0.6
org.testing.db 0.1
parallel 4.2.3
pillar 1.9.0
pkgbuild 1.4.0
pkgconfig 2.0.3
pkgdown 2.0.7
pkgload 1.3.2
plogr 0.2.0
plyranges 1.18.0
png 0.1-8
praise 1.0.0
prettyunits 1.1.1
processx 3.8.1
profvis 0.3.7
progress 1.2.2
promises 1.2.0.1
ps 1.7.5
purrr 1.0.1
ragg 1.2.5
rappdirs 0.3.3
rclipboard 0.1.6
rcmdcheck 1.4.0
regioneR 1.33.0
rematch2 2.1.2
remotes 2.4.2
restfulr 0.0.15
rjson 0.2.21
rlang 1.1.0
rmarkdown 2.21
roxygen2 7.2.3
rpart 4.1.19
rprojroot 2.0.3
rstudioapi 0.14
rtracklayer 1.58.0
rversions 2.1.2
sass 0.4.5
scales 1.2.1
sessioninfo 1.2.2
shiny 1.7.4
shinyFeedback 0.4.0
shinyFiles 0.9.3
shinyWidgets 0.7.6
shinydashboard 0.7.2
shinydashboardPlus 2.0.3
shinyjs 2.1.0
snow 0.4-4
sourcetools 0.1.7-1
spatial 7.3-16
splines 4.2.3
stats4 4.2.3
stats 4.2.3
stringi 1.7.12
stringr 1.5.0
survival 3.5-3
sys 3.4.1
systemfonts 1.0.4
tcltk 4.2.3
testRcppAttributePackage 1.0
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
testthat 3.1.7
textshaping 0.3.6
tibble 3.2.1
tidyr 1.3.0
tidyselect 1.2.0
tinytex 0.45
tippy 0.1.0
tools 4.2.3
translations 4.2.3
urlchecker 1.0.1
usethis 2.1.6
utf8 1.2.3
utils 4.2.3
vctrs 0.6.2
viridisLite 0.4.1
waiter 0.2.5
waldo 0.4.0
whisker 0.4.1
withr 2.5.0
xfun 0.38
xml2 1.3.3
xopen 1.0.0
xtable 1.8-4
yaml 2.3.7
zip 2.3.0
zlibbioc 1.44.0

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ubuntu/python3-apt 2.4.0ubuntu1
ubuntu/python3-chardet 4.0.0-1
ubuntu/python3-debian 0.1.43ubuntu1
ubuntu/python3-distutils 3.10.6-1~22.04
ubuntu/python3-lib2to3 3.10.6-1~22.04
ubuntu/python3-minimal 3.10.6-1~22.04
ubuntu/python3-pkg-resources 59.6.0-1.2ubuntu0.22.04.1
ubuntu/python3.10-minimal 3.10.6-1~22.04.2ubuntu1.1
ubuntu/python3.10 3.10.6-1~22.04.2ubuntu1.1
ubuntu/python3 3.10.6-1~22.04
ubuntu/readline-common 8.1.2-1
ubuntu/rpcsvc-proto 1.4.2-0ubuntu6
ubuntu/sed 4.8-1ubuntu2
ubuntu/sensible-utils 0.0.17
ubuntu/shiny-server 1.5.21.1007
ubuntu/sudo 1.9.9-1ubuntu2.4
ubuntu/sysvinit-utils 3.01-1ubuntu1
ubuntu/tar 1.34 dfsg-1ubuntu0.1.22.04.1
ubuntu/tcl8.6 8.6.12 dfsg-1build1
ubuntu/tex-common 6.17
ubuntu/tk8.6 8.6.12-1build1
ubuntu/tzdata 2023c-0ubuntu0.22.04.2
ubuntu/ubuntu-keyring 2021.03.26
ubuntu/ucf 3.0043
ubuntu/unzip 6.0-26ubuntu3.1
ubuntu/usrmerge 25ubuntu2
ubuntu/util-linux 2.37.2-4ubuntu3
ubuntu/uuid-dev 2.37.2-4ubuntu3
ubuntu/wget 1.21.2-2ubuntu1
ubuntu/x11-common 1:7.7 23ubuntu2
ubuntu/x11proto-dev 2021.5-1
ubuntu/xfonts-utils 1:7.7 6build2
ubuntu/xorg-sgml-doctools 1:1.11-1.1
ubuntu/xtail 2.1-8
ubuntu/xtrans-dev 1.4.0-1
ubuntu/zip 3.0-12build2
ubuntu/zlib1g-dev 1:1.2.11.dfsg-2ubuntu9.2
ubuntu/zlib1g 1:1.2.11.dfsg-2ubuntu9.2
ubuntu/zstd 1.4.8 dfsg-3build1

bootswatch 5.2.2
imurmurhash 0.1.4
indent-string 4.0.0
@colors/colors 1.5.0
@gar/promisify 1.1.3
@isaacs/string-locale-compare 1.1.0
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@npmcli/config 4.2.2
@npmcli/disparity-colors 2.0.0
@npmcli/fs 2.1.2
@npmcli/git 3.0.2
@npmcli/installed-package-contents 1.0.7
@npmcli/map-workspaces 2.0.4
@npmcli/metavuln-calculator 3.1.1
@npmcli/move-file 2.0.1
@npmcli/name-from-folder 1.0.1
@npmcli/node-gyp 2.0.0
@npmcli/package-json 2.0.0
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@npmcli/query 1.2.0
@npmcli/run-script 4.2.1
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1to2 1.0.0
abbrev 1.1.1
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agent-base 6.0.2
agentkeepalive 4.2.1
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ansi-regex 5.0.1
ansi-styles 4.3.0
aproba 2.0.0
archy 1.0.0
are-we-there-yet 3.0.1
array-flatten 1.1.1
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balanced-match 1.0.2
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basic-auth 2.0.1
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binary-extensions 2.2.0
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bootstrap-accessibility-plugin 1.0.6
bootstrap-colorpicker 3.4.0
bootstrap-sass 3.4.1
bootstrap 4.6.0
bootstrap 5.2.2
bootswatch 3.4.1
bootswatch 4.6.0
brace-expansion 1.1.11
brace-expansion 2.0.1
builtins 5.0.1
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bytes 3.1.2
cacache 16.1.3
call-bind 1.0.2
chalk 4.1.2
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cidr-regex 3.1.1
clean-stack 2.2.0
cli-columns 4.0.0
cli-table3 0.6.2
client-sessions 0.8.0
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cmd-shim 5.0.0
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cssesc 3.0.0
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debug 3.2.7
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depd 2.0.0
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err-code 2.0.3
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etag 1.8.1
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express 4.18.2
fastest-levenshtein 1.0.12
faye-websocket 0.11.4
finalhandler 1.2.0
flatted 3.2.7
follow-redirects 1.15.1
forwarded 0.2.0
fresh 0.5.2
fs-extra 8.1.0
fs-minipass 2.1.0
fs.realpath 1.0.0
function-bind 1.1.1
gauge 4.0.4
get-intrinsic 1.1.2
glob 7.2.3
glob 8.0.3
graceful-fs 4.2.10
handlebars 4.7.7
has-flag 4.0.0
has-symbols 1.0.3
has-unicode 2.0.1
has 1.0.3
hosted-git-info 5.2.1
http-cache-semantics 4.1.1
http-errors 2.0.0
http-parser-js 0.5.8
http-proxy-agent 5.0.0
http-proxy 1.18.1
https-proxy-agent 5.0.1
humanize-ms 1.2.1
iconv-lite 0.4.24
iconv-lite 0.6.3
ignore-walk 5.0.1
infer-owner 1.0.4
inflight 1.0.6
inherits 2.0.4
ini 3.0.1
init-package-json 3.0.2
ip-address 8.1.0
ip-regex 4.3.0
ip 2.0.0
ipaddr.js 1.9.1
is-cidr 4.0.2
is-core-module 2.10.0
is-fullwidth-code-point 3.0.0
is-lambda 1.0.1
isexe 2.0.0
jsbn 1.1.0
json-parse-even-better-errors 2.3.1
json-stringify-nice 1.1.4
json3 3.3.3
jsonfile 4.0.0
jsonparse 1.3.1
just-diff-apply 5.4.1
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keygrip 1.0.3
libnpmaccess 6.0.4
libnpmdiff 4.0.5
libnpmexec 4.0.14
libnpmfund 3.0.5
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libnpmorg 4.0.4
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libnpmteam 4.0.4
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lru-cache 6.0.0
lru-cache 7.13.2
make-fetch-happen 10.2.1
media-typer 0.3.0
merge-descriptors 1.0.1
methods 1.1.2
mime-db 1.52.0
mime-types 2.1.35
mime 1.6.0
minimatch 3.1.2
minimatch 5.1.0
minimist 1.2.6
minipass-collect 1.0.2
minipass-fetch 2.1.1
minipass-flush 1.0.5
minipass-json-stream 1.0.1
minipass-pipeline 1.2.4
minipass-sized 1.0.3
minipass 3.3.4
minizlib 2.1.2
mkdirp-infer-owner 2.0.0
mkdirp 1.0.4
moment 2.29.4
morgan 1.10.0
ms 2.0.0
ms 2.1.2
ms 2.1.3
mute-stream 0.0.8
nan 2.17.0
negotiator 0.6.3
neo-async 2.6.2
node-gyp 9.1.0
nopt 5.0.0
nopt 6.0.0
normalize-package-data 4.0.1
npm-audit-report 3.0.0
npm-bundled 1.1.2
npm-bundled 2.0.1
npm-init 0.0.0
npm-install-checks 5.0.0
npm-normalize-package-bin 1.0.1
npm-normalize-package-bin 2.0.0
npm-package-arg 9.1.0
npm-packlist 5.1.3
npm-pick-manifest 7.0.2
npm-profile 6.2.1
npm-registry-fetch 13.3.1
npm-user-validate 1.0.1
npm 8.19.4
npmlog 6.0.2
object-inspect 1.12.2
on-finished 2.3.0
on-finished 2.4.1
on-headers 1.0.2
once 1.4.0
opener 1.5.2
optimist 0.6.1
p-map 4.0.0
pacote 13.6.2
parse-conflict-json 2.0.2
parseurl 1.3.3
path-is-absolute 1.0.1
path-to-regexp 0.1.7
pause 0.1.0
pinkyswear 2.2.3
postcss-selector-parser 6.0.10
proc-log 2.0.1
promise-all-reject-late 1.0.1
promise-call-limit 1.0.1
promise-inflight 1.0.1
promise-retry 2.0.1
promzard 0.3.0
proxy-addr 2.0.7
q 1.5.1
qrcode-terminal 0.12.0
qs 6.11.0
querystringify 2.2.0
range-parser 1.2.1
raw-body 2.5.1
read-cmd-shim 3.0.0
read-package-json-fast 2.0.3
read-package-json 5.0.2
read 1.0.7
readable-stream 3.6.0
readdir-scoped-modules 1.1.0
requires-port 1.0.0
retry 0.12.0
rfdc 1.3.0
rimraf 3.0.2
safe-buffer 5.1.2
safe-buffer 5.2.1
safer-buffer 2.1.2
semver 7.3.7
send 0.18.0
serve-static 1.15.0
set-blocking 2.0.0
setprototypeof 1.2.0
shiny-server-client 1.2.0
shiny-server 1.5.21
side-channel 1.0.4
signal-exit 3.0.7
smart-buffer 4.2.0
sockjs-client 1.5.2
sockjs 0.3.24
socks-proxy-agent 7.0.0
socks 2.7.0
source-map 0.6.1
spdx-correct 3.1.1
spdx-exceptions 2.3.0
spdx-expression-parse 3.0.1
spdx-license-ids 3.0.11
split 1.0.1
sprintf-js 1.1.2
ssri 9.0.1
stable 0.1.8
statuses 2.0.1
streamroller 3.1.3
string-width 4.2.3
string_decoder 1.3.0
strip-ansi 6.0.1
supports-color 7.2.0
tar 6.1.11
text-table 0.2.0
through 2.3.8
tiny-relative-date 1.3.0
toidentifier 1.0.1
treeverse 2.0.0
type-is 1.6.18
uglify-js 3.16.3
underscore 1.13.6
unique-filename 2.0.1
unique-slug 3.0.0
universalify 0.1.2
unpipe 1.0.0
url-parse 1.5.10
util-deprecate 1.0.2
utils-merge 1.0.1
uuid 8.3.2
validate-npm-package-license 3.0.4
validate-npm-package-name 4.0.0
vary 1.1.2
walk-up-path 1.0.0
wcwidth 1.0.1
websocket-driver 0.7.4
websocket-extensions 0.1.4
which 2.0.2
wide-align 1.1.5
wordwrap 0.0.3
wordwrap 1.0.0
wrappy 1.0.2
write-file-atomic 4.0.2
yallist 4.0.0

bash 5.1.16

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actions/checkout v2
actions/checkout v3
actions/setup-node v1
actions/setup-node v2
actions/setup-node v3
actions/setup-python v2
actions/setup-python v4
google-github-actions/release-please-action v2

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