Ecosyste.ms: Docker

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doejgi/trinityrnaseq-wdl : latest

Ubuntu 20.04.5 LTS

Latest release: over 1 year ago - 331 downloads - 980 dependencies

JSON

Dependencies

@PKGNAME@ @PKGVERSION@
@PKGNAME@ @VERSION@
AnnotationDbi 1.60.0
BH 1.78.0-0
BiasedUrn 2.0.8
Biobase 2.58.0
BiocFileCache 2.6.0
BiocGenerics 0.44.0
BiocIO 1.8.0
BiocManager 1.30.19
BiocParallel 1.32.3
BiocVersion 3.16.0
Biostrings 2.66.0
DBI 1.1.3
DESeq2 1.38.1
DEXSeq 1.44.0
DelayedArray 0.24.0
GO.db 3.16.0
GOplot 1.0.2
GenomeInfoDb 1.34.3
GenomeInfoDbData 1.2.9
GenomicAlignments 1.34.0
GenomicFeatures 1.50.2
GenomicRanges 1.50.1
Glimma 2.8.0
IRanges 2.32.0
KEGGREST 1.38.0
KernSmooth 2.23-20
MASS 7.3-56
Matrix 1.4-1
MatrixGenerics 1.10.0
R6 2.5.1
RColorBrewer 1.1-3
RCurl 1.98-1.9
ROTS 1.26.0
RSQLite 2.2.19
Rcpp 1.0.9
RcppArmadillo 0.11.4.2.1
Rhtslib 2.0.0
Rsamtools 2.14.0
S4Vectors 0.36.0
SummarizedExperiment 1.28.0
XML 3.99-0.12
XVector 0.38.0
amap 0.8-19
annotate 1.76.0
ape 5.6-2
argparse 2.1.6
askpass 1.1
assertthat 0.2.1
backports 1.4.1
base64enc 0.1-3
base 4.2.0
biomaRt 2.54.0
bit64 4.0.5
bit 4.0.5
bitops 1.0-7
blob 1.2.3
boot 1.3-28
broom 1.0.1
bslib 0.4.1
caTools 1.18.2
cachem 1.0.6
callr 3.7.3
cellranger 1.1.0
class 7.3-20
cli 3.4.1
clipr 0.8.0
cluster 2.1.3
codetools 0.2-18
colorspace 2.0-3
compiler 4.2.0
cpp11 0.4.3
crayon 1.5.2
ctc 1.72.0
curl 4.3.3
data.table 1.14.6
datasets 4.2.0
dbplyr 2.2.1
digest 0.6.30
dplyr 1.0.10
dtplyr 1.2.2
edgeR 3.40.0
ellipsis 0.3.2
evaluate 0.18
fansi 1.0.3
farver 2.1.1
fastcluster 1.2.3
fastmap 1.1.0
filelock 1.0.2
findpython 1.0.7
forcats 0.5.2
foreign 0.8-82
formatR 1.12
fs 1.5.2
futile.logger 1.4.3
futile.options 1.0.1
gargle 1.2.1
geneLenDataBase 1.34.0
genefilter 1.80.1
geneplotter 1.76.0
generics 0.1.3
ggdendro 0.1.23
ggplot2 3.4.0
glue 1.6.2
googledrive 2.0.0
googlesheets4 1.0.1
goseq 1.50.0
gplots 3.1.3
grDevices 4.2.0
graphics 4.2.0
grid 4.2.0
gridExtra 2.3
gtable 0.3.1
gtools 3.9.4
haven 2.5.1
highr 0.9
hms 1.1.2
htmltools 0.5.3
htmlwidgets 1.5.4
httr 1.4.4
hwriter 1.3.2.1
ids 1.0.1
isoband 0.2.6
jquerylib 0.1.4
jsonlite 1.8.3
knitr 1.41
labeling 0.4.2
lambda.r 1.2.4
lattice 0.20-45
lifecycle 1.0.3
limma 3.54.0
locfit 1.5-9.6
lubridate 1.9.0
magrittr 2.0.3
matrixStats 0.63.0
memoise 2.0.1
methods 4.2.0
mgcv 1.8-40
mime 0.12
modelr 0.1.10
munsell 0.5.0
nlme 3.1-157
nnet 7.3-17
openssl 2.0.4
org.testing.db 0.1
parallel 4.2.0
pillar 1.8.1
pkgconfig 2.0.3
plogr 0.2.0
plyr 1.8.8
png 0.1-8
prettyunits 1.1.1
processx 3.8.0
progress 1.2.2
ps 1.7.2
purrr 0.3.5
qvalue 2.30.0
rappdirs 0.3.3
readr 2.1.3
readxl 1.4.1
rematch2 2.1.2
rematch 1.0.1
reprex 2.0.2
reshape2 1.4.4
restfulr 0.0.15
rjson 0.2.21
rlang 1.0.6
rmarkdown 2.18
rpart 4.1.16
rstudioapi 0.14
rtracklayer 1.58.0
rvest 1.0.3
sass 0.4.4
scales 1.2.1
selectr 0.4-2
snow 0.4-4
spatial 7.3-15
splines 4.2.0
statmod 1.4.37
stats4 4.2.0
stats 4.2.0
stringi 1.7.8
stringr 1.4.1
survival 3.3-1
sys 3.4.1
tcltk 4.2.0
testRcppAttributePackage 1.0
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
tibble 3.1.8
tidyr 1.2.1
tidyselect 1.2.0
tidyverse 1.3.2
timechange 0.1.1
tinytex 0.42
tools 4.2.0
translations 4.2.0
tximport 1.26.0
tximportData 1.26.0
tzdb 0.3.0
utf8 1.2.2
utils 4.2.0
uuid 1.1-0
vctrs 0.5.1
viridisLite 0.4.1
vroom 1.6.0
withr 2.5.0
xfun 0.35
xml2 1.3.3
xtable 1.8-4
yaml 2.3.6
zlibbioc 1.44.0

date 3.0.0
dbm 1.1.0
delegate 0.1.0
did_you_mean 1.4.0
etc 1.1.0
fcntl 1.0.0
fiddle 1.0.0
benchmark 0.1.0
bigdecimal 2.0.0
bundler 2.1.2
cgi 0.1.0
csv 3.1.2
fileutils 1.4.1
forwardable 1.3.1
gdbm 2.1.0
getoptlong 0.1.0
io-console 0.5.3
ipaddr 1.2.2
irb 1.2.1
json 2.3.0
logger 1.4.2
matrix 0.2.0
minitest 5.13.0
mutex_m 0.1.0
net-pop 0.1.0
net-smtp 0.1.0
net-telnet 0.1.1
observer 0.1.0
open3 0.1.0
openssl 2.1.2
ostruct 0.2.0
power_assert 1.1.7
prime 0.1.1
pstore 0.1.0
psych 3.1.0
racc 1.4.16
rake 13.0.1
rdoc 6.2.1
readline-ext 0.1.0
readline 0.0.2
reline 0.1.2
rexml 3.2.3
rss 0.2.8
sdbm 1.0.0
singleton 0.1.0
stringio 0.1.0
strscan 1.0.3
test-unit 3.3.5
timeout 0.1.0
tracer 0.1.0
uri 0.10.0
webrick 1.6.0
xmlrpc 0.3.0
yaml 0.1.0
zlib 1.1.0

ubuntu/python3-distutils 3.8.10-0ubuntu1~20.04
ubuntu/python3-lib2to3 3.8.10-0ubuntu1~20.04
ubuntu/python3-minimal 3.8.2-0ubuntu2
ubuntu/python3-pip 20.0.2-5ubuntu1.6
ubuntu/python3-pkg-resources 45.2.0-1
ubuntu/python3-setuptools 45.2.0-1
ubuntu/python3-wheel 0.34.2-1
ubuntu/python3.8-dev 3.8.10-0ubuntu1~20.04.5
ubuntu/python3.8-minimal 3.8.10-0ubuntu1~20.04.5
ubuntu/python3.8 3.8.10-0ubuntu1~20.04.5
ubuntu/python3 3.8.2-0ubuntu2
ubuntu/rake 13.0.1-4
ubuntu/readline-common 8.0-4
ubuntu/rsync 3.1.3-8ubuntu0.4
ubuntu/ruby-minitest 5.13.0-1
ubuntu/ruby-net-telnet 0.1.1-2
ubuntu/ruby-power-assert 1.1.7-1
ubuntu/ruby-test-unit 3.3.5-1
ubuntu/ruby-xmlrpc 0.3.0-2
ubuntu/adduser 3.118ubuntu2
ubuntu/alsa-topology-conf 1.2.2-1
ubuntu/alsa-ucm-conf 1.2.2-1ubuntu0.13
ubuntu/apt 2.0.9
ubuntu/at-spi2-core 2.36.0-2
ubuntu/autoconf 2.69-11.1
ubuntu/automake 1:1.16.1-4ubuntu6
ubuntu/autotools-dev 20180224.1
ubuntu/base-files 11ubuntu5.6
ubuntu/base-passwd 3.5.47
ubuntu/bash 5.0-6ubuntu1.2
ubuntu/binutils-common 2.34-6ubuntu1.3
ubuntu/binutils-x86-64-linux-gnu 2.34-6ubuntu1.3
ubuntu/binutils 2.34-6ubuntu1.3
ubuntu/bsdutils 1:2.34-0.1ubuntu9.3
ubuntu/build-essential 12.8ubuntu1.1
ubuntu/bzip2-doc 1.0.8-2
ubuntu/bzip2 1.0.8-2
ubuntu/ca-certificates-java 20190405ubuntu1
ubuntu/ca-certificates 20211016~20.04.1
ubuntu/cmake-data 3.16.3-1ubuntu1.20.04.1
ubuntu/cmake 3.16.3-1ubuntu1.20.04.1
ubuntu/comerr-dev 2.1-1.45.5-2ubuntu1.1
ubuntu/coreutils 8.30-3ubuntu2
ubuntu/cpp-9 9.4.0-1ubuntu1~20.04.1
ubuntu/cpp 4:9.3.0-1ubuntu2
ubuntu/curl 7.68.0-1ubuntu2.14
ubuntu/cython3 0.29.14-0.1ubuntu3
ubuntu/dash 0.5.10.2-6
ubuntu/dbus 1.12.16-2ubuntu2.3
ubuntu/debconf 1.5.73
ubuntu/debianutils 4.9.1
ubuntu/default-jre-headless 2:1.11-72
ubuntu/default-jre 2:1.11-72
ubuntu/diffutils 1:3.7-3
ubuntu/dirmngr 2.2.19-3ubuntu2.2
ubuntu/dpkg-dev 1.19.7ubuntu3.2
ubuntu/dpkg 1.19.7ubuntu3.2
ubuntu/dvisvgm 2.8.1-1build1
ubuntu/e2fsprogs 1.45.5-2ubuntu1.1
ubuntu/f2c 20160102-1
ubuntu/fakeroot 1.24-1
ubuntu/fdisk 2.34-0.1ubuntu9.3
ubuntu/file 1:5.38-4
ubuntu/findutils 4.7.0-1ubuntu1
ubuntu/fontconfig-config 2.13.1-2ubuntu3
ubuntu/fonts-dejavu-core 2.37-1
ubuntu/fonts-dejavu-extra 2.37-1
ubuntu/fonts-droid-fallback 1:6.0.1r16-1.1
ubuntu/fonts-lato 2.0-2
ubuntu/fonts-lmodern 2.004.5-6
ubuntu/fonts-noto-mono 20200323-1build1~ubuntu20.04.1
ubuntu/fonts-texgyre 20180621-3
ubuntu/fonts-urw-base35 20170801.1-3
ubuntu/fort77 1.15-11
ubuntu/ftp 0.17-34.1
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ubuntu/g 4:9.3.0-1ubuntu2
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ubuntu/gcc-9-base 9.4.0-1ubuntu1~20.04.1
ubuntu/gcc-9 9.4.0-1ubuntu1~20.04.1
ubuntu/gcc 4:9.3.0-1ubuntu2
ubuntu/gfortran-9 9.4.0-1ubuntu1~20.04.1
ubuntu/gfortran 4:9.3.0-1ubuntu2
ubuntu/ghc 8.8.1 dfsg1 is 8.6.5 dfsg1-3
ubuntu/git 1:2.25.1-1ubuntu3.6
ubuntu/gnupg-l10n 2.2.19-3ubuntu2.2
ubuntu/gnupg-utils 2.2.19-3ubuntu2.2
ubuntu/gnupg 2.2.19-3ubuntu2.2
ubuntu/gpg-agent 2.2.19-3ubuntu2.2
ubuntu/gpg-wks-client 2.2.19-3ubuntu2.2
ubuntu/gpg-wks-server 2.2.19-3ubuntu2.2
ubuntu/gpg 2.2.19-3ubuntu2.2
ubuntu/gpgconf 2.2.19-3ubuntu2.2
ubuntu/gpgsm 2.2.19-3ubuntu2.2
ubuntu/gpgv 2.2.19-3ubuntu2.2
ubuntu/grep 3.4-1
ubuntu/gzip 1.10-0ubuntu4.1
ubuntu/hostname 3.23
ubuntu/icu-devtools 66.1-2ubuntu2.1
ubuntu/init-system-helpers 1.57
ubuntu/java-common 0.72
ubuntu/javascript-common 11
ubuntu/krb5-locales 1.17-6ubuntu4.1
ubuntu/krb5-multidev 1.17-6ubuntu4.1
ubuntu/libacl1 2.2.53-6
ubuntu/libalgorithm-diff-perl 1.19.03-2
ubuntu/libalgorithm-diff-xs-perl 0.04-6
ubuntu/libalgorithm-merge-perl 0.08-3
ubuntu/libapache-pom-java 18-1
ubuntu/libapparmor1 2.13.3-7ubuntu5.1
ubuntu/libapt-pkg6.0 2.0.9
ubuntu/libarchive13 3.4.0-2ubuntu1.2
ubuntu/libasan5 9.4.0-1ubuntu1~20.04.1
ubuntu/libasn1-8-heimdal 7.7.0 dfsg-1ubuntu1.1
ubuntu/libasound2-data 1.2.2-2.1ubuntu2.5
ubuntu/libasound2 1.2.2-2.1ubuntu2.5
ubuntu/libassuan0 2.5.3-7ubuntu2
ubuntu/libatk-bridge2.0-0 2.34.2-0ubuntu2~20.04.1
ubuntu/libatk-wrapper-java-jni 0.37.1-1
ubuntu/libatk-wrapper-java 0.37.1-1
ubuntu/libatk1.0-0 2.35.1-1ubuntu2
ubuntu/libatk1.0-data 2.35.1-1ubuntu2
ubuntu/libatomic1 10.3.0-1ubuntu1~20.04
ubuntu/libatspi2.0-0 2.36.0-2
ubuntu/libattr1 1:2.4.48-5
ubuntu/libaudit-common 1:2.8.5-2ubuntu6
ubuntu/libaudit1 1:2.8.5-2ubuntu6
ubuntu/libauthen-sasl-perl 2.1600-1
ubuntu/libavahi-client3 0.7-4ubuntu7.1
ubuntu/libavahi-common-data 0.7-4ubuntu7.1
ubuntu/libavahi-common3 0.7-4ubuntu7.1
ubuntu/libbinutils 2.34-6ubuntu1.3
ubuntu/libblas-dev 3.9.0-1build1
ubuntu/libblas3 3.9.0-1build1
ubuntu/libblkid-dev 2.34-0.1ubuntu9.3
ubuntu/libblkid1 2.34-0.1ubuntu9.3
ubuntu/libbrotli1 1.0.7-6ubuntu0.1
ubuntu/libbsd-dev 0.10.0-1
ubuntu/libbsd0 0.10.0-1
ubuntu/libbz2-1.0 1.0.8-2
ubuntu/libbz2-dev 1.0.8-2
ubuntu/libc-bin 2.31-0ubuntu9.9
ubuntu/libc-dev-bin 2.31-0ubuntu9.9
ubuntu/libc6-dev 2.31-0ubuntu9.9
ubuntu/libc6 2.31-0ubuntu9.9
ubuntu/ruby2.7 2.7.0-5ubuntu1.7
ubuntu/libcairo-gobject2 1.16.0-4ubuntu1
ubuntu/libcairo-script-interpreter2 1.16.0-4ubuntu1
ubuntu/libcairo2-dev 1.16.0-4ubuntu1
ubuntu/libcairo2 1.16.0-4ubuntu1
ubuntu/libcap-ng0 0.7.9-2.1build1
ubuntu/libcc1-0 10.3.0-1ubuntu1~20.04
ubuntu/libcom-err2 1.45.5-2ubuntu1.1
ubuntu/libcommons-logging-java 1.2-2
ubuntu/libcommons-parent-java 43-1
ubuntu/libcrypt-dev 1:4.4.10-10ubuntu4
ubuntu/libcrypt1 1:4.4.10-10ubuntu4
ubuntu/libctf-nobfd0 2.34-6ubuntu1.3
ubuntu/libctf0 2.34-6ubuntu1.3
ubuntu/libcups2 2.3.1-9ubuntu1.2
ubuntu/libcurl4-openssl-dev 7.68.0-1ubuntu2.14
ubuntu/libcurl4 7.68.0-1ubuntu2.14
ubuntu/libdata-dump-perl 1.23-1
ubuntu/libdb-dev 1:5.3.21~exp1ubuntu2
ubuntu/libdb5.3-dev 5.3.28 dfsg1-0.6ubuntu2
ubuntu/libdb5.3 5.3.28 dfsg1-0.6ubuntu2
ubuntu/libdbus-1-3 1.12.16-2ubuntu2.3
ubuntu/libdebconfclient0 0.251ubuntu1
ubuntu/libdpkg-perl 1.19.7ubuntu3.2
ubuntu/libdrm-amdgpu1 2.4.107-8ubuntu1~20.04.2
ubuntu/libdrm-common 2.4.107-8ubuntu1~20.04.2
ubuntu/libdrm-intel1 2.4.107-8ubuntu1~20.04.2
ubuntu/libdrm-nouveau2 2.4.107-8ubuntu1~20.04.2
ubuntu/libdrm-radeon1 2.4.107-8ubuntu1~20.04.2
ubuntu/libdrm2 2.4.107-8ubuntu1~20.04.2
ubuntu/libedit2 3.1-20191231-1
ubuntu/libelf1 0.176-1.1build1
ubuntu/libencode-locale-perl 1.05-1
ubuntu/libexpat1-dev 2.2.9-1ubuntu0.6
ubuntu/libexpat1 2.2.9-1ubuntu0.6
ubuntu/libext2fs2 1.45.5-2ubuntu1.1
ubuntu/libf2c2-dev 20130926-3
ubuntu/libf2c2 20130926-3
ubuntu/libfakeroot 1.24-1
ubuntu/libfdisk1 2.34-0.1ubuntu9.3
ubuntu/libffi-dev 3.3-4
ubuntu/libffi7 3.3-4
ubuntu/libfile-basedir-perl 0.08-1
ubuntu/libfile-desktopentry-perl 0.22-1
ubuntu/libfile-fcntllock-perl 0.22-3build4
ubuntu/libfile-listing-perl 6.04-1
ubuntu/libfile-mimeinfo-perl 0.29-1
ubuntu/libfont-afm-perl 1.20-2
ubuntu/libfontbox-java 1:1.8.16-2
ubuntu/libfontconfig1-dev 2.13.1-2ubuntu3
ubuntu/libfontconfig1 2.13.1-2ubuntu3
ubuntu/libfontenc1 1:1.1.4-0ubuntu1
ubuntu/libfreetype-dev 2.10.1-2ubuntu0.2
ubuntu/libfreetype6-dev 2.10.1-2ubuntu0.2
ubuntu/libfreetype6 2.10.1-2ubuntu0.2
ubuntu/libgcc-9-dev 9.4.0-1ubuntu1~20.04.1
ubuntu/libgcc-s1 10.3.0-1ubuntu1~20.04
ubuntu/libgcrypt20 1.8.5-5ubuntu1.1
ubuntu/libgdbm-compat4 1.18.1-5
ubuntu/libgdbm6 1.18.1-5
ubuntu/libgfortran-9-dev 9.4.0-1ubuntu1~20.04.1
ubuntu/libgfortran5 10.3.0-1ubuntu1~20.04
ubuntu/libghc-zlib-dev 0.6.2-2build1
ubuntu/libgif7 5.1.9-1
ubuntu/libgl1-mesa-dri 21.2.6-0ubuntu0.1~20.04.2
ubuntu/libgl1 1.3.2-1~ubuntu0.20.04.2
ubuntu/libglapi-mesa 21.2.6-0ubuntu0.1~20.04.2
ubuntu/libglib2.0-0 2.64.6-1~ubuntu20.04.4
ubuntu/libglib2.0-bin 2.64.6-1~ubuntu20.04.4
ubuntu/libglib2.0-data 2.64.6-1~ubuntu20.04.4
ubuntu/libglib2.0-dev-bin 2.64.6-1~ubuntu20.04.4
ubuntu/libglib2.0-dev 2.64.6-1~ubuntu20.04.4
ubuntu/libglvnd0 1.3.2-1~ubuntu0.20.04.2
ubuntu/libglx-mesa0 21.2.6-0ubuntu0.1~20.04.2
ubuntu/libglx0 1.3.2-1~ubuntu0.20.04.2
ubuntu/libgmp-dev 2:6.2.0 dfsg-4ubuntu0.1
ubuntu/libgmp10 2:6.2.0 dfsg-4ubuntu0.1
ubuntu/libgmpxx4ldbl 2:6.2.0 dfsg-4ubuntu0.1
ubuntu/libgnutls30 3.6.13-2ubuntu1.7
ubuntu/libgomp1 10.3.0-1ubuntu1~20.04
ubuntu/libgpg-error0 1.37-1
ubuntu/libgraphite2-3 1.3.13-11build1
ubuntu/libgs9-common 9.50~dfsg-5ubuntu4.6
ubuntu/libgs9 9.50~dfsg-5ubuntu4.6
ubuntu/libgssapi-krb5-2 1.17-6ubuntu4.1
ubuntu/libgssapi3-heimdal 7.7.0 dfsg-1ubuntu1.1
ubuntu/libgssrpc4 1.17-6ubuntu4.1
ubuntu/libharfbuzz-icu0 2.6.4-1ubuntu4.2
ubuntu/libharfbuzz0b 2.6.4-1ubuntu4.2
ubuntu/ruby 1:2.7 1
ubuntu/libhcrypto4-heimdal 7.7.0 dfsg-1ubuntu1.1
ubuntu/libheimbase1-heimdal 7.7.0 dfsg-1ubuntu1.1
ubuntu/libheimntlm0-heimdal 7.7.0 dfsg-1ubuntu1.1
ubuntu/libhogweed5 3.5.1 really3.5.1-2ubuntu0.2
ubuntu/libhtml-form-perl 6.07-1
ubuntu/libhtml-format-perl 2.12-1
ubuntu/libhtml-parser-perl 3.72-5
ubuntu/libhtml-tagset-perl 3.20-4
ubuntu/libhtml-tree-perl 5.07-2
ubuntu/libhttp-cookies-perl 6.08-1
ubuntu/libhttp-daemon-perl 6.06-1ubuntu0.1
ubuntu/libhttp-date-perl 6.05-1
ubuntu/libhttp-message-perl 6.22-1
ubuntu/libhttp-negotiate-perl 6.01-1
ubuntu/libhx509-5-heimdal 7.7.0 dfsg-1ubuntu1.1
ubuntu/libice-dev 2:1.0.10-0ubuntu1
ubuntu/libice6 2:1.0.10-0ubuntu1
ubuntu/libicu-dev 66.1-2ubuntu2.1
ubuntu/libicu66 66.1-2ubuntu2.1
ubuntu/libidn11 1.33-2.2ubuntu2
ubuntu/libidn2-0 2.2.0-2
ubuntu/libijs-0.35 0.35-15
ubuntu/libio-html-perl 1.001-1
ubuntu/libio-socket-ssl-perl 2.067-1
ubuntu/libio-stringy-perl 2.111-3
ubuntu/libipc-system-simple-perl 1.26-1
ubuntu/libisl22 0.22.1-1
ubuntu/libitm1 10.3.0-1ubuntu1~20.04
ubuntu/libjbig0 2.1-3.1ubuntu0.20.04.1
ubuntu/libjbig2dec0 0.18-1ubuntu1
ubuntu/libjpeg-dev 8c-2ubuntu8
ubuntu/libjpeg-turbo8-dev 2.0.3-0ubuntu1.20.04.3
ubuntu/libjpeg-turbo8 2.0.3-0ubuntu1.20.04.3
ubuntu/libjpeg8-dev 8c-2ubuntu8
ubuntu/libjpeg8 8c-2ubuntu8
ubuntu/libjs-jquery 3.3.1~dfsg-3
ubuntu/libjsoncpp1 1.7.4-3.1ubuntu2
ubuntu/libk5crypto3 1.17-6ubuntu4.1
ubuntu/libkadm5clnt-mit11 1.17-6ubuntu4.1
ubuntu/libkadm5srv-mit11 1.17-6ubuntu4.1
ubuntu/libkdb5-9 1.17-6ubuntu4.1
ubuntu/libkeyutils1 1.6-6ubuntu1.1
ubuntu/libkpathsea6 2019.20190605.51237-3build2
ubuntu/libkrb5-26-heimdal 7.7.0 dfsg-1ubuntu1.1
ubuntu/libkrb5-3 1.17-6ubuntu4.1
ubuntu/libkrb5-dev 1.17-6ubuntu4.1
ubuntu/libkrb5support0 1.17-6ubuntu4.1
ubuntu/libksba8 1.3.5-2ubuntu0.20.04.1
ubuntu/liblcms2-2 2.9-4
ubuntu/libldap-2.4-2 2.4.49 dfsg-2ubuntu1.9
ubuntu/libldap-common 2.4.49 dfsg-2ubuntu1.9
ubuntu/libllvm12 1:12.0.0-3ubuntu1~20.04.5
ubuntu/liblocale-gettext-perl 1.07-4
ubuntu/liblsan0 10.3.0-1ubuntu1~20.04
ubuntu/liblwp-mediatypes-perl 6.04-1
ubuntu/liblwp-protocol-https-perl 6.07-2ubuntu2
ubuntu/liblz4-1 1.9.2-2ubuntu0.20.04.1
ubuntu/liblzma-dev 5.2.4-1ubuntu1.1
ubuntu/liblzma5 5.2.4-1ubuntu1.1
ubuntu/liblzo2-2 2.10-2
ubuntu/libmagic-mgc 1:5.38-4
ubuntu/libmagic1 1:5.38-4
ubuntu/libmailtools-perl 2.21-1
ubuntu/libmount-dev 2.34-0.1ubuntu9.3
ubuntu/libmount1 2.34-0.1ubuntu9.3
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ubuntu/libnpth0 1.6-1
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ubuntu/libpng-dev 1.6.37-2
ubuntu/libpng-tools 1.6.37-2
ubuntu/libpng16-16 1.6.37-2
ubuntu/libpopt0 1.16-14
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ubuntu/libpsl5 0.21.0-1ubuntu1
ubuntu/libptexenc1 2019.20190605.51237-3build2
ubuntu/libpthread-stubs0-dev 0.4-1
ubuntu/libpython3-dev 3.8.2-0ubuntu2
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ubuntu/libpython3.8-dev 3.8.10-0ubuntu1~20.04.5
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ubuntu/libpython3.8 3.8.10-0ubuntu1~20.04.5
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ubuntu/librhash0 1.3.9-1
ubuntu/libroken18-heimdal 7.7.0 dfsg-1ubuntu1.1
ubuntu/librtmp1 2.4 20151223.gitfa8646d.1-2build1
ubuntu/libruby2.7 2.7.0-5ubuntu1.7
ubuntu/libsasl2-2 2.1.27 dfsg-2ubuntu0.1
ubuntu/libsasl2-modules-db 2.1.27 dfsg-2ubuntu0.1
ubuntu/libsasl2-modules 2.1.27 dfsg-2ubuntu0.1
ubuntu/libseccomp2 2.5.1-1ubuntu1~20.04.2
ubuntu/libselinux1-dev 3.0-1build2
ubuntu/libselinux1 3.0-1build2
ubuntu/libsemanage-common 3.0-1build2
ubuntu/libsemanage1 3.0-1build2
ubuntu/libsensors-config 1:3.6.0-2ubuntu1.1
ubuntu/libsensors5 1:3.6.0-2ubuntu1.1
ubuntu/libsepol1-dev 3.0-1ubuntu0.1
ubuntu/libsepol1 3.0-1ubuntu0.1
ubuntu/libsigsegv2 2.12-2
ubuntu/libsm-dev 2:1.2.3-1
ubuntu/libsm6 2:1.2.3-1
ubuntu/libsmartcols1 2.34-0.1ubuntu9.3
ubuntu/libsodium-dev 1.0.18-1
ubuntu/libsodium23 1.0.18-1
ubuntu/libsqlite3-0 3.31.1-4ubuntu0.5
ubuntu/libss2 1.45.5-2ubuntu1.1
ubuntu/libssh-4 0.9.3-2ubuntu2.2
ubuntu/libssl-dev 1.1.1f-1ubuntu2.16
ubuntu/libssl1.1 1.1.1f-1ubuntu2.16
ubuntu/libstdc -9-dev 9.4.0-1ubuntu1~20.04.1
ubuntu/libstdc 6 10.3.0-1ubuntu1~20.04
ubuntu/libsynctex2 2019.20190605.51237-3build2
ubuntu/libsystemd0 245.4-4ubuntu3.18
ubuntu/libtasn1-6 4.16.0-2
ubuntu/libtbb-dev 2020.1-2
ubuntu/libtbb2 2020.1-2
ubuntu/libtcl8.6 8.6.10 dfsg-1
ubuntu/libteckit0 2.5.8 ds2-5ubuntu2
ubuntu/libtexlua53 2019.20190605.51237-3build2
ubuntu/libtexluajit2 2019.20190605.51237-3build2
ubuntu/libtext-iconv-perl 1.7-7
ubuntu/libtie-ixhash-perl 1.23-2
ubuntu/libtiff5 4.1.0 git191117-2ubuntu0.20.04.6
ubuntu/libtimedate-perl 2.3200-1
ubuntu/libtinfo6 6.2-0ubuntu2
ubuntu/libtk8.6 8.6.10-1
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ubuntu/libtsan0 10.3.0-1ubuntu1~20.04
ubuntu/libubsan1 10.3.0-1ubuntu1~20.04
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ubuntu/libutempter0 1.1.6-4
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ubuntu/libvulkan1 1.2.131.2-1
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ubuntu/sed 4.7-1
ubuntu/libwoff1 1.0.2-1build2
ubuntu/libwww-perl 6.43-1
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ubuntu/libxmu6 2:1.1.3-0ubuntu1
ubuntu/libxmuu1 2:1.1.3-0ubuntu1
ubuntu/libxpm4 1:3.5.12-1
ubuntu/libxrandr2 2:1.5.2-0ubuntu1
ubuntu/libxrender-dev 1:0.9.10-1
ubuntu/libxrender1 1:0.9.10-1
ubuntu/libxshmfence1 1.3-1
ubuntu/libxss1 1:1.2.3-1
ubuntu/libxt-dev 1:1.1.5-1
ubuntu/libxt6 1:1.1.5-1
ubuntu/libxtst6 2:1.2.3-1
ubuntu/libxv1 2:1.0.11-1
ubuntu/libxxf86dga1 2:1.1.5-0ubuntu1
ubuntu/libxxf86vm1 1:1.1.4-1build1
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ubuntu/linux-libc-dev 5.4.0-132.148
ubuntu/lmodern 2.004.5-6
ubuntu/login 1:4.8.1-1ubuntu5.20.04.2
ubuntu/logsave 1.45.5-2ubuntu1.1
ubuntu/lsb-base 11.1.0ubuntu2
ubuntu/m4 1.4.18-4
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ubuntu/manpages-dev 5.05-1
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ubuntu/mawk 1.3.4.20200120-2
ubuntu/mesa-vulkan-drivers 21.2.6-0ubuntu0.1~20.04.2
ubuntu/mime-support 3.64ubuntu1
ubuntu/mount 2.34-0.1ubuntu9.3
ubuntu/nano 4.8-1ubuntu1
ubuntu/ncurses-base 6.2-0ubuntu2
ubuntu/ncurses-bin 6.2-0ubuntu2
ubuntu/netbase 6.1
ubuntu/openjdk-11-jre-headless 11.0.17 8-1ubuntu2~20.04
ubuntu/openjdk-11-jre 11.0.17 8-1ubuntu2~20.04
ubuntu/openssh-client 1:8.2p1-4ubuntu0.5
ubuntu/openssl 1.1.1f-1ubuntu2.16
ubuntu/parallel 20161222-1.1
ubuntu/passwd 1:4.8.1-1ubuntu5.20.04.2
ubuntu/patch 2.7.6-6
ubuntu/perl-base 5.30.0-9ubuntu0.3
ubuntu/perl-modules-5.30 5.30.0-9ubuntu0.3
ubuntu/perl-openssl-defaults 4
ubuntu/perl 5.30.0-9ubuntu0.3
ubuntu/pinentry-curses 1.1.0-3build1
ubuntu/pkg-config 0.29.1-0ubuntu4
ubuntu/poppler-data 0.4.9-2
ubuntu/preview-latex-style 11.91-2ubuntu2
ubuntu/procps 2:3.3.16-1ubuntu2.3
ubuntu/publicsuffix 20200303.0012-1
ubuntu/python-pip-whl 20.0.2-5ubuntu1.6
ubuntu/python3-dev 3.8.2-0ubuntu2
ubuntu/rubygems-integration 1.16
ubuntu/sensible-utils 0.0.12 nmu1
ubuntu/shared-mime-info 1.15-1
ubuntu/sysstat 12.2.0-2ubuntu0.2
ubuntu/sysvinit-utils 2.96-2.1ubuntu1
ubuntu/t1utils 1.41-3
ubuntu/tar 1.30 dfsg-7ubuntu0.20.04.2
ubuntu/tcl8.6 8.6.10 dfsg-1
ubuntu/tcl 8.6.9 1
ubuntu/tex-common 6.13
ubuntu/tex-gyre 20180621-3
ubuntu/texlive-base 2019.20200218-1
ubuntu/texlive-binaries 2019.20190605.51237-3build2
ubuntu/texlive-fonts-recommended 2019.20200218-1
ubuntu/texlive-latex-base 2019.20200218-1
ubuntu/texlive-latex-extra 2019.202000218-1
ubuntu/texlive-latex-recommended 2019.20200218-1
ubuntu/texlive-pictures 2019.20200218-1
ubuntu/texlive-plain-generic 2019.202000218-1
ubuntu/texlive 2019.20200218-1
ubuntu/tipa 2:1.3-20
ubuntu/tk8.6 8.6.10-1
ubuntu/tk 8.6.9 1
ubuntu/tzdata 2022f-0ubuntu0.20.04.1
ubuntu/ubuntu-keyring 2020.02.11.4
ubuntu/ucf 3.0038 nmu1
ubuntu/unzip 6.0-25ubuntu1.1
ubuntu/util-linux 2.34-0.1ubuntu9.3
ubuntu/uuid-dev 2.34-0.1ubuntu9.3
ubuntu/wget 1.20.3-1ubuntu2
ubuntu/x11-common 1:7.7 19ubuntu14
ubuntu/x11-utils 7.7 5
ubuntu/x11-xserver-utils 7.7 8
ubuntu/x11proto-core-dev 2019.2-1ubuntu1
ubuntu/x11proto-dev 2019.2-1ubuntu1
ubuntu/x11proto-xext-dev 2019.2-1ubuntu1
ubuntu/xbitmaps 1.1.1-2
ubuntu/xdg-user-dirs 0.17-2ubuntu1
ubuntu/xdg-utils 1.1.3-2ubuntu1.20.04.2
ubuntu/xfonts-encodings 1:1.0.5-0ubuntu1
ubuntu/xfonts-utils 1:7.7 6
ubuntu/xorg-sgml-doctools 1:1.11-1
ubuntu/xterm 353-1ubuntu1.20.04.2
ubuntu/xtrans-dev 1.4.0-1
ubuntu/xz-utils 5.2.4-1ubuntu1.1
ubuntu/zip 3.0-11build1
ubuntu/zlib1g-dev 1:1.2.11.dfsg-2ubuntu1.5
ubuntu/zlib1g 1:1.2.11.dfsg-2ubuntu1.5

bash 5.0.17

Butterfly:Butterfly *
Jaligner:Jaligner *
args4j:args4j 2.33
cisd-jhdf5:cisd-jhdf5 *
com.carrotsearch:hppc 0.7.2
com.clearspring.analytics:stream 2.7.0
com.esotericsoftware:kryo-shaded 4.0.2
com.esotericsoftware:kryo 4.0.0
com.esotericsoftware:minlog 1.3.0
com.esotericsoftware:reflectasm 1.10.0
com.esotericsoftware:reflectasm 1.11.3
com.fasterxml.jackson.core:jackson-annotations 2.9.8
com.fasterxml.jackson.core:jackson-core 2.9.9
com.fasterxml.jackson.core:jackson-databind 2.9.8
com.fasterxml.jackson.jaxrs:jackson-jaxrs-base 2.9.8
com.fasterxml.jackson.jaxrs:jackson-jaxrs-json-provider 2.9.8
com.fasterxml.jackson.module:jackson-module-jaxb-annotations 2.9.8
com.fasterxml.jackson.module:jackson-module-paranamer 2.9.8
com.fasterxml.woodstox:woodstox-core 5.0.3
com.github.fommil.netlib:core 1.1
com.github.fommil.netlib:core 1.1.2
com.github.fommil.netlib:native_ref-java 1.1
com.github.fommil.netlib:native_system-java 1.1
com.github.fommil.netlib:netlib-native_ref-linux-x86_64 1.1
com.github.fommil.netlib:netlib-native_ref-osx-x86_64 1.1
com.github.fommil.netlib:netlib-native_system-linux-x86_64 1.1
com.github.fommil.netlib:netlib-native_system-osx-x86_64 1.1
com.github.fommil:jniloader 1.1
com.github.jsr203hadoop:jsr203hadoop 1.0.3
com.github.rwl:jtransforms 2.4.0
com.github.stephenc.jcip:jcip-annotations 1.0-1
com.google.android:annotations 4.1.1.4
com.google.api-client:google-api-client 1.30.10
com.google.api.grpc:grpc-google-cloud-bigquerystorage-v1 1.5.1
com.google.api.grpc:grpc-google-cloud-bigquerystorage-v1beta1 0.105.1
com.google.api.grpc:grpc-google-cloud-bigquerystorage-v1beta2 0.105.1
com.google.api.grpc:proto-google-cloud-bigquerystorage-v1 1.5.1
com.google.api.grpc:proto-google-cloud-bigquerystorage-v1alpha2 0.105.1
com.google.api.grpc:proto-google-cloud-bigquerystorage-v1beta1 0.105.1
com.google.api.grpc:proto-google-cloud-bigquerystorage-v1beta2 0.105.1
com.google.api.grpc:proto-google-common-protos 1.18.0
com.google.apis:google-api-services-bigquery v2-rev20200818-1.30.10
com.google.apis:google-api-services-storage v1-rev135-1.24.1
com.google.apis:google-api-services-storage v1-rev20190910-1.30.3
com.google.auth:google-auth-library-credentials 0.18.0
com.google.auth:google-auth-library-oauth2-http 0.18.0
com.google.auto.value:auto-value-annotations 1.6.6
com.google.cloud.bigdataoss:gcs-connector 1.9.4-hadoop3
com.google.cloud.bigdataoss:gcsio 1.9.4
com.google.cloud.bigdataoss:util-hadoop 1.9.4-hadoop3
com.google.cloud.bigdataoss:util 1.9.4
com.google.cloud:google-cloud-bigquery 1.117.1
com.google.cloud:google-cloud-bigquerystorage 1.5.1
com.google.cloud:google-cloud-core-http 1.91.3
com.google.cloud:google-cloud-core 1.91.3
com.google.cloud:google-cloud-nio 0.117.0-alpha
com.google.cloud:google-cloud-storage 1.99.0
com.google.code.findbugs:jsr305 3.0.2
com.google.code.gson:gson 2.8.6
com.google.errorprone:error_prone_annotations 2.3.3
com.google.guava:failureaccess 1.0.1
com.google.guava:guava 15.0
com.google.guava:guava 27.1-jre
com.google.guava:listenablefuture 9999.0-empty-to-avoid-conflict-with-guava
com.google.http-client:google-http-client-appengine 1.32.1
com.google.http-client:google-http-client-jackson2 1.36.0
com.google.http-client:google-http-client 1.36.0
com.google.j2objc:j2objc-annotations 1.3
com.google.oauth-client:google-oauth-client 1.31.0
com.google.protobuf:protobuf-java-util 3.10.0
com.google.protobuf:protobuf-java 3.10.0
com.google.re2j:re2j 1.1
com.googlecode.json-simple:json-simple 1.1.1
com.googlecode.protobuf-java-format:protobuf-java-format 1.2
com.nimbusds:nimbus-jose-jwt 4.41.1
com.ning:compress-lzf 1.0.3
com.opencsv:opencsv 3.4
com.squareup.okhttp:okhttp 2.7.5
com.squareup.okio:okio 1.6.0
com.sun.jersey.contribs:jersey-guice 1.19
com.sun.jersey:jersey-client 1.19
com.sun.jersey:jersey-core 1.19
com.sun.jersey:jersey-json 1.19
com.sun.jersey:jersey-server 1.19
com.sun.jersey:jersey-servlet 1.19
com.thoughtworks.paranamer:paranamer 2.8
com.univocity:univocity-parsers 2.7.3
com.vlkan:flatbuffers 1.2.0-3f79e055
commons-beanutils:commons-beanutils 1.9.3
commons-cli:commons-cli 1.2
commons-codec:commons-codec 1.11
commons-collections:commons-collections 3.2.2
commons-io:commons-io 1.4
commons-io:commons-io 2.4
commons-io:commons-io 2.6
commons-lang:commons-lang 2.4
commons-lang:commons-lang 2.6
commons-logging:commons-logging 1.1.1
commons-logging:commons-logging 1.2
commons-net:commons-net 3.6
commons-pool:commons-pool 1.6
de.javakaffee:kryo-serializers 0.42
dnsjava:dnsjava 2.1.7
gov.nist.math.jama:gov.nist.math.jama 1.1.1
io.airlift:aircompressor 0.10
io.dropwizard.metrics:metrics-core 3.1.5
io.dropwizard.metrics:metrics-graphite 3.1.5
io.dropwizard.metrics:metrics-json 3.1.5
io.dropwizard.metrics:metrics-jvm 3.1.5
io.netty:netty-all 4.1.42.Final
io.netty:netty-buffer 4.1.48.Final
io.netty:netty-codec-http2 4.1.48.Final
io.netty:netty-codec-http 4.1.48.Final
io.netty:netty-codec-socks 4.1.48.Final
io.netty:netty-codec 4.1.48.Final
io.netty:netty-common 4.1.48.Final
io.netty:netty-handler-proxy 4.1.48.Final
io.netty:netty-handler 4.1.48.Final
io.netty:netty-resolver 4.1.48.Final
io.netty:netty-tcnative-boringssl-static 2.0.30.Final
io.netty:netty-transport-native-epoll 4.1.48.Final
io.netty:netty-transport-native-unix-common 4.1.48.Final
io.netty:netty-transport 4.1.48.Final
io.netty:netty 3.10.6.Final
jarhdf5:jarhdf5 2.11.0
java-getopt:java-getopt 1.0.13
javax.annotation:javax.annotation-api 1.3.2
javax.servlet:javax.servlet-api 3.1.0
javax.validation:validation-api 1.1.0.Final
javax.ws.rs:javax.ws.rs-api 2.0.1
javax.ws.rs:jsr311-api 1.1.1
javax.xml.bind:jaxb-api 2.2.11
jbzip2:jbzip2 0.9
jline:jline 0.9.94
joda-time:joda-time 2.9.9
jrt-fs:jrt-fs 11.0.17
log4j:log4j 1.2.17
net.grey-panther:natural-comparator 1.1
net.minidev:accessors-smart 1.2
net.minidev:json-smart 2.3
net.razorvine:pyrolite 4.13
net.sf.jopt-simple:jopt-simple 5.0.3
net.sf.jung:jung-algorithms 2.0.1
net.sf.jung:jung-api 2.0.1
net.sf.jung:jung-graph-impl 2.0.1
net.sf.opencsv:opencsv 2.3
net.sf.py4j:py4j 0.10.7
org.GNOME.Accessibility.AtkWrapper:java-atk-wrapper *
org.aeonbits.owner:owner 1.0.9
org.antlr:antlr4-runtime 4.7
org.apache.arrow:arrow-format 0.10.0
org.apache.arrow:arrow-memory 0.10.0
org.apache.arrow:arrow-vector 0.10.0
org.apache.avro:avro-guava-dependencies 1.8.2
org.apache.avro:avro-ipc 1.8.2
org.apache.avro:avro-mapred 1.8.2
org.apache.avro:avro 1.8.2
org.apache.commons.collections15:collections-generic 4.01
org.apache.commons:commons-collections4 4.3
org.apache.commons:commons-compress 1.19
org.apache.commons:commons-configuration2 2.4
org.apache.commons:commons-crypto 1.0.0
org.apache.commons:commons-jexl 2.1.1
org.apache.commons:commons-lang3 3.4
org.apache.commons:commons-lang3 3.8.1
org.apache.commons:commons-math3 3.5
org.apache.commons:commons-text 1.6
org.apache.commons:commons-vfs2 2.0
org.apache.curator:curator-client 2.13.0
org.apache.curator:curator-framework 2.13.0
org.apache.curator:curator-recipes 2.13.0
org.apache.hadoop:hadoop-annotations 3.2.1
org.apache.hadoop:hadoop-auth 3.2.1
org.apache.hadoop:hadoop-client 3.2.1
org.apache.hadoop:hadoop-common 3.2.1
org.apache.hadoop:hadoop-hdfs-client 3.2.1
org.apache.hadoop:hadoop-mapreduce-client-common 3.2.1
org.apache.hadoop:hadoop-mapreduce-client-core 3.2.1
org.apache.hadoop:hadoop-mapreduce-client-jobclient 3.2.1
org.apache.hadoop:hadoop-yarn-api 3.2.1
org.apache.hadoop:hadoop-yarn-client 3.2.1
org.apache.hadoop:hadoop-yarn-common 3.2.1
org.apache.hive:hive-storage-api 2.6.0
org.apache.htrace:htrace-core4 4.1.0-incubating
org.apache.httpcomponents:httpclient 4.5.10
org.apache.httpcomponents:httpcore 4.4.12
org.apache.kerby:kerb-admin 1.0.1
org.apache.kerby:kerb-client 1.0.1
org.apache.kerby:kerb-common 1.0.1
org.apache.kerby:kerb-core 1.0.1
org.apache.kerby:kerb-crypto 1.0.1
org.apache.kerby:kerb-identity 1.0.1
org.apache.kerby:kerb-server 1.0.1
org.apache.kerby:kerb-simplekdc 1.0.1
org.apache.kerby:kerb-util 1.0.1
org.apache.kerby:kerby-asn1 1.0.1
org.apache.kerby:kerby-config 1.0.1
org.apache.kerby:kerby-pkix 1.0.1
org.apache.kerby:kerby-util 1.0.1
org.apache.kerby:kerby-xdr 1.0.1
org.apache.kerby:token-provider 1.0.1
org.apache.logging.log4j:log4j-api 2.13.2
org.apache.logging.log4j:log4j-api 2.5
org.apache.logging.log4j:log4j-core 2.13.2
org.apache.logging.log4j:log4j-core 2.5
org.apache.logging.log4j:log4j-jcl 2.13.1
org.apache.maven.scm:maven-scm-api 1.4
org.apache.maven.scm:maven-scm-provider-svn-commons 1.4
org.apache.maven.scm:maven-scm-provider-svnexe 1.4
org.apache.orc:orc-core 1.5.5
org.apache.orc:orc-mapreduce 1.5.5
org.apache.orc:orc-shims 1.5.5
org.apache.parquet:parquet-avro 1.10.1
org.apache.parquet:parquet-column 1.10.1
org.apache.parquet:parquet-common 1.10.1
org.apache.parquet:parquet-encoding 1.10.1
org.apache.parquet:parquet-format 2.4.0
org.apache.parquet:parquet-hadoop 1.10.1
org.apache.parquet:parquet-jackson 1.10.1
org.apache.pdfbox:fontbox 1.8.16
org.apache.pdfbox:pdfbox 1.8.16
org.apache.spark:spark-catalyst_2.11 2.4.5
org.apache.spark:spark-core_2.11 2.4.5
org.apache.spark:spark-graphx_2.11 2.4.5
org.apache.spark:spark-kvstore_2.11 2.4.5
org.apache.spark:spark-launcher_2.11 2.4.5
org.apache.spark:spark-mllib-local_2.11 2.4.5
org.apache.spark:spark-mllib_2.11 2.4.5
org.apache.spark:spark-network-common_2.11 2.4.5
org.apache.spark:spark-network-shuffle_2.11 2.4.5
org.apache.spark:spark-sketch_2.11 2.4.5
org.apache.spark:spark-sql_2.11 2.4.5
org.apache.spark:spark-streaming_2.11 2.4.5
org.apache.spark:spark-tags_2.11 2.4.5
org.apache.spark:spark-unsafe_2.11 2.4.5
org.apache.xbean:xbean-asm-util 4.8
org.apache.xbean:xbean-asm6-shaded 4.8
org.apache.yetus:audience-annotations 0.5.0
org.apache:logging 1.2
org.bdgenomics.adam:adam-codegen-spark2_2.11 0.28.0
org.bdgenomics.adam:adam-core-spark2_2.11 0.28.0
org.bdgenomics.bdg-formats:bdg-formats 0.13.0
org.bdgenomics.utils:utils-cli-spark2_2.11 0.2.15
org.bdgenomics.utils:utils-intervalrdd-spark2_2.11 0.2.15
org.bdgenomics.utils:utils-io-spark2_2.11 0.2.15
org.bdgenomics.utils:utils-metrics-spark2_2.11 0.2.15
org.bdgenomics.utils:utils-misc-spark2_2.11 0.2.15
org.broadinstitute.hellbender.Main:gatk-package 4.2.1.0-local
org.broadinstitute.hellbender.Main:gatk-package 4.2.1.0-spark
org.codehaus.janino:commons-compiler 3.0.9
org.codehaus.janino:janino 3.0.9
org.codehaus.jettison:jettison 1.1
org.codehaus.mojo:animal-sniffer-annotations 1.18
org.codehaus.plexus:plexus-interpolation 1.0
org.codehaus.plexus:plexus-utils 1.5.6
org.codehaus.woodstox:stax2-api 3.1.4
org.debian.security.UpdateCertificates:ca-certificates-java *
org.disq-bio:disq 0.3.6
org.eclipse.jdt.internal.jarinjarloader.JarRsrcLoader:ExitTester *
org.eclipse.jetty:jetty-client 9.3.27.v20190418
org.eclipse.jetty:jetty-continuation 9.3.27.v20190418
org.eclipse.jetty:jetty-http 9.3.27.v20190418
org.eclipse.jetty:jetty-io 9.3.27.v20190418
org.eclipse.jetty:jetty-plus 9.3.27.v20190418
org.eclipse.jetty:jetty-proxy 9.3.27.v20190418
org.eclipse.jetty:jetty-security 9.3.27.v20190418
org.eclipse.jetty:jetty-server 9.3.27.v20190418
org.eclipse.jetty:jetty-servlet 9.3.27.v20190418
org.eclipse.jetty:jetty-servlets 9.3.27.v20190418
org.eclipse.jetty:jetty-util 9.3.27.v20190418
org.eclipse.jetty:jetty-webapp 9.3.24.v20180605
org.eclipse.jetty:jetty-xml 9.3.24.v20180605
org.fusesource.leveldbjni:leveldbjni-all 1.8
org.genomicsdb:genomicsdb 1.4.1
org.glassfish.hk2.external:aopalliance-repackaged 2.4.0-b34
org.glassfish.hk2.external:javax.inject 2.4.0-b34
org.glassfish.hk2:hk2-api 2.4.0-b34
org.glassfish.hk2:hk2-locator 2.4.0-b34
org.glassfish.hk2:hk2-utils 2.4.0-b34
org.glassfish.hk2:osgi-resource-locator 1.0.1
org.glassfish.jersey.bundles.repackaged:jersey-guava 2.22.2
org.glassfish.jersey.containers:jersey-container-servlet-core 2.22.2
org.glassfish.jersey.containers:jersey-container-servlet 2.22.2
org.glassfish.jersey.core:jersey-client 2.22.2
org.glassfish.jersey.core:jersey-common 2.22.2
org.glassfish.jersey.core:jersey-server 2.22.2
org.glassfish.jersey.media:jersey-media-jaxb 2.22.2
org.javassist:javassist 3.18.2-GA
org.jctools:jctools-core 3.0.0
org.jgrapht:jgrapht-core 0.9.1
org.jpmml:pmml-model 1.2.15
org.jpmml:pmml-schema 1.2.15
org.json:json 20200518
org.jvnet:tiger-types 1.4
org.ojalgo:ojalgo-commons-math3 1.0.0
org.ojalgo:ojalgo 44.0.0
org.reflections:reflections 0.9.10
org.roaringbitmap:RoaringBitmap 0.7.45
org.roaringbitmap:shims 0.7.45
org.sharegov:mjson 1.4.1
org.slf4j:jcl-over-slf4j 1.7.16
org.slf4j:slf4j-api 1.7.30
org.slf4j:slf4j-log4j12 1.7.25
org.spark-project.spark:unused 1.0.0
org.threeten:threetenbp 1.4.0
org.usadellab.trimmomatic.Trimmomatic:trimmomatic 0.36
org.xerial:sqlite-jdbc 3.20.1
pax:pax *
picard:picard 2.25.7
sam:sam 1.103
tex4ht:tex4ht *

bootstrap-accessibility-plugin 1.0.6
bootstrap-colorpicker 3.4.0
bootstrap-sass 3.4.1
bootstrap 4.6.0
bootstrap 5.1.3
bootswatch 3.4.1
bootswatch 4.6.0
bootswatch 5.1.3

Cython 0.29.14
HTSeq 2.0.2
Jinja2 3.1.2
Markdown 3.4.1
MarkupSafe 2.1.1
Pillow 9.3.0
PyYAML 6.0
Pygments 2.13.0
certifi 2022.9.24
charset-normalizer 2.1.1
click 8.1.3
coloredlogs 15.0.1
colormath 3.0.0
commonmark 0.9.1
contourpy 1.0.6
cycler 0.11.0
fonttools 4.38.0
future 0.18.2
humanfriendly 10.0
idna 3.4
importlib-metadata 5.1.0
kiwisolver 1.4.4
lzstring 1.0.4
matplotlib 3.6.2
multiqc 1.14.dev0
networkx 2.8.8
numpy 1.23.5
packaging 21.3
pip 20.0.2
pyparsing 3.0.9
pysam 0.20.0
python-dateutil 2.8.2
requests 2.28.1
rich-click 1.5.2
rich 12.6.0
setuptools 45.2.0
simplejson 3.18.0
six 1.16.0
spectra 0.0.11
typing_extensions 4.4.0
urllib3 1.26.13
wheel 0.34.2
zipp 3.11.0