Ecosyste.ms: Docker

An open API service providing dependency metadata for docker images.

dhspence/docker-genomic-analysis : 122121

From Chris Miller's example

Ubuntu 20.04.3 LTS

Latest release: almost 3 years ago - 19,678 downloads - 1,294 dependencies

JSON

Dependencies

@PKGNAME@ @PKGVERSION@
@PKGNAME@ @VERSION@
AnnotationDbi 1.48.0
AnnotationForge 1.28.0
BH 1.75.0-0
BSgenome 1.54.0
Biobase 2.46.0
BiocFileCache 1.10.2
BiocGenerics 0.32.0
BiocManager 1.30.16
BiocParallel 1.20.1
BiocVersion 3.10.1
Biostrings 2.54.0
Category 2.52.1
DBI 1.1.1
DESeq2 1.26.0
DelayedArray 0.12.3
DelayedMatrixStats 1.8.0
DiffBind 2.14.0
FField 0.1.0
Formula 1.2-4
GO.db 3.10.0
GOstats 2.52.0
GSEABase 1.48.0
GenVisR 1.18.1
GenomeInfoDb 1.22.1
GenomeInfoDbData 1.2.2
GenomicAlignments 1.22.1
GenomicFeatures 1.38.2
GenomicRanges 1.38.0
HDF5Array 1.14.4
Hmisc 4.6-0
IRanges 2.20.2
KernSmooth 2.23-16
MASS 7.3-51.5
Matrix 1.2-18
R.methodsS3 1.8.1
R.oo 1.24.0
R.utils 2.11.0
R6 2.5.1
RBGL 1.62.1
RColorBrewer 1.1-2
RCurl 1.98-1.5
RSQLite 2.2.8
Rcpp 1.0.7
RcppArmadillo 0.10.7.0.0
Rgraphviz 2.30.0
Rhdf5lib 1.8.0
Rhtslib 1.18.1
Rsamtools 2.2.3
S4Vectors 0.24.4
ShortRead 1.44.3
SummarizedExperiment 1.16.1
VariantAnnotation 1.32.0
XML 3.99-0.3
XVector 0.26.0
amap 0.8-18
annotate 1.64.0
askpass 1.1
assertthat 0.2.1
backports 1.2.1
base64enc 0.1-3
base64url 1.4
base 3.6.3
batchtools 0.9.15
beachmat 2.2.1
beachtest 1.0.0
biomaRt 2.42.1
bit64 4.0.5
bit 4.0.4
bitops 1.0-7
blob 1.2.2
boot 1.3-24
brew 1.0-6
broom 0.7.9
bsseq 1.22.0
caTools 1.18.2
cachem 1.0.6
callr 3.7.0
cellranger 1.1.0
checkmate 2.0.0
class 7.3-15
cli 3.0.1
clipr 0.7.1
cluster 2.1.0
codetools 0.2-16
colorspace 2.0-2
compiler 3.6.3
cpp11 0.4.0
crayon 1.4.1
curl 4.3.2
data.table 1.14.2
datasets 3.6.3
dbplyr 2.1.1
digest 0.6.28
dplyr 1.0.7
dtplyr 1.1.0
edgeR 3.28.1
ellipsis 0.3.2
evaluate 0.14
fansi 0.5.0
farver 2.1.0
fastmap 1.1.0
forcats 0.5.1
foreign 0.8-75
formatR 1.11
fs 1.5.0
futile.logger 1.4.3
futile.options 1.0.1
gargle 1.2.0
genefilter 1.68.0
geneplotter 1.64.0
generics 0.1.0
ggplot2 3.3.5
ggrepel 0.9.1
glue 1.4.2
googledrive 2.0.0
googlesheets4 1.0.0
gplots 3.1.1
grDevices 3.6.3
graph 1.64.0
graphics 3.6.3
grid 3.6.3
gridExtra 2.3
gtable 0.3.0
gtools 3.9.2
haven 2.4.3
highr 0.9
hms 1.1.1
htmlTable 2.3.0
htmltools 0.5.2
htmlwidgets 1.5.4
httr 1.4.2
hwriter 1.3.2
ids 1.0.1
isoband 0.2.5
jpeg 0.1-9
jquerylib 0.1.4
jsonlite 1.7.2
knitr 1.36
labeling 0.4.2
lambda.r 1.2.4
lattice 0.20-40
latticeExtra 0.6-29
lifecycle 1.0.1
limma 3.42.2
locfit 1.5-9.4
lubridate 1.8.0
magrittr 2.0.1
matrixStats 0.61.0
memoise 2.0.0
methods 3.6.3
mgcv 1.8-31
mime 0.12
modelr 0.1.8
morebeach 1.0.0
munsell 0.5.0
nlme 3.1-144
nnet 7.3-13
openssl 1.4.5
org.testing.db 0.1
parallel 3.6.3
permute 0.9-5
pheatmap 1.0.12
pillar 1.6.4
pkgconfig 2.0.3
plogr 0.2.0
plotrix 3.8-2
plyr 1.8.6
png 0.1-7
prettyunits 1.1.1
processx 3.5.2
progress 1.2.2
ps 1.6.0
purrr 0.3.4
rappdirs 0.3.3
readr 2.0.2
readxl 1.3.1
rematch2 2.1.2
rematch 1.0.1
reprex 2.0.1
reshape2 1.4.4
rhdf5 2.30.1
rjson 0.2.20
rlang 0.4.12
rmarkdown 2.11
rpart 4.1-15
rstudioapi 0.13
rtracklayer 1.46.0
rvest 1.0.2
scales 1.1.1
selectr 0.4-2
seqnames.db @VERSION@
snow 0.4-3
spatial 7.3-11
splines 3.6.3
stats4 3.6.3
stats 3.6.3
stringi 1.7.5
stringr 1.4.0
survival 3.1-8
sys 3.4
systemPipeR 1.20.0
tcltk 3.6.3
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
tibble 3.1.5
tidyr 1.1.4
tidyselect 1.1.1
tidyverse 1.3.1
tinytex 0.34
tools 3.6.3
translations 3.6.3
tzdb 0.1.2
utf8 1.2.2
utils 3.6.3
uuid 0.1-4
vctrs 0.3.8
viridis 0.6.2
viridisLite 0.4.0
vroom 1.5.5
withr 2.4.2
xfun 0.27
xml2 1.3.2
xtable 1.8-4
yaml 2.2.1
zlibbioc 1.32.0

ubuntu/adduser 3.118ubuntu2
ubuntu/adwaita-icon-theme 3.36.1-2ubuntu0.20.04.2
ubuntu/ant 1.10.7-1
ubuntu/apt 2.0.6
ubuntu/base-files 11ubuntu5.4
ubuntu/base-passwd 3.5.47
ubuntu/bash-completion 1:2.10-1ubuntu1
ubuntu/bash 5.0-6ubuntu1.1
ubuntu/bc 1.07.1-2build1
ubuntu/bedtools 2.27.1 dfsg-4ubuntu1
ubuntu/bind9-host 1:9.16.1-0ubuntu2.8
ubuntu/bind9-libs 1:9.16.1-0ubuntu2.8
ubuntu/binutils-common 2.34-6ubuntu1.1
ubuntu/binutils-x86-64-linux-gnu 2.34-6ubuntu1.1
ubuntu/binutils 2.34-6ubuntu1.1
ubuntu/bsdutils 1:2.34-0.1ubuntu9.1
ubuntu/bubblewrap 0.4.0-1ubuntu4
ubuntu/build-essential 12.8ubuntu1.1
ubuntu/bzip2 1.0.8-2
ubuntu/ca-certificates-java 20190405ubuntu1
ubuntu/ca-certificates 20210119~20.04.2
ubuntu/coreutils 8.30-3ubuntu2
ubuntu/cpp-9 9.3.0-17ubuntu1~20.04
ubuntu/cpp 4:9.3.0-1ubuntu2
ubuntu/cracklib-runtime 2.9.6-3.2
ubuntu/curl 7.68.0-1ubuntu2.7
ubuntu/dash 0.5.10.2-6
ubuntu/dbus-user-session 1.12.16-2ubuntu2.1
ubuntu/dbus 1.12.16-2ubuntu2.1
ubuntu/dconf-gsettings-backend 0.36.0-1
ubuntu/dconf-service 0.36.0-1
ubuntu/debconf 1.5.73
ubuntu/debianutils 4.9.1
ubuntu/default-jdk-headless 2:1.11-72
ubuntu/default-jdk 2:1.11-72
ubuntu/default-jre-headless 2:1.11-72
ubuntu/default-jre 2:1.11-72
ubuntu/dh-elpa-helper 2.0.2
ubuntu/dictionaries-common 1.28.1
ubuntu/diffutils 1:3.7-3
ubuntu/dpkg-dev 1.19.7ubuntu3
ubuntu/dpkg 1.19.7ubuntu3
ubuntu/e2fsprogs 1.45.5-2ubuntu1
ubuntu/elpa-apache-mode 2.2.0-2
ubuntu/elpa-async 1.9.4-1
ubuntu/elpa-bar-cursor 2.0-1
ubuntu/elpa-bm 201905-1
ubuntu/elpa-boxquote 2.1-3
ubuntu/elpa-browse-kill-ring 2.0.0-2
ubuntu/elpa-csv-mode 1.12-1
ubuntu/elpa-diminish 0.45-3
ubuntu/elpa-eproject 1.5 git20180312.068218d-2
ubuntu/elpa-folding 0 20170925.1538-2
ubuntu/elpa-graphviz-dot-mode 0.4 41 gc456a2b-2
ubuntu/elpa-helm-core 3.6.0-1
ubuntu/elpa-helm 3.6.0-1
ubuntu/elpa-htmlize 1.55-1
ubuntu/elpa-initsplit 1.8 3 gc941d43-2
ubuntu/elpa-markdown-mode 2.3 210-1
ubuntu/elpa-mutt-alias 1.5-3
ubuntu/elpa-muttrc-mode 1.2.1-2
ubuntu/elpa-pod-mode 1.03-2
ubuntu/elpa-popup 0.5.3-3
ubuntu/elpa-session 2.4b-2
ubuntu/elpa-tabbar 2.2-3
ubuntu/emacs-bin-common 1:26.3 1-1ubuntu2
ubuntu/emacs-common 1:26.3 1-1ubuntu2
ubuntu/emacs-goodies-el 42.2
ubuntu/emacs-gtk 1:26.3 1-1ubuntu2
ubuntu/emacs 1:26.3 1-1ubuntu2
ubuntu/emacsen-common 3.0.4
ubuntu/evince-common 3.36.10-0ubuntu1
ubuntu/evince 3.36.10-0ubuntu1
ubuntu/fdisk 2.34-0.1ubuntu9.1
ubuntu/file 1:5.38-4
ubuntu/findutils 4.7.0-1ubuntu1
ubuntu/fontconfig-config 2.13.1-2ubuntu3
ubuntu/fontconfig 2.13.1-2ubuntu3
ubuntu/fonts-dejavu-core 2.37-1
ubuntu/fonts-lmodern 2.004.5-6
ubuntu/fonts-texgyre 20180621-3
ubuntu/fonts-urw-base35 20170801.1-3
ubuntu/g -9 9.3.0-17ubuntu1~20.04
ubuntu/g 4:9.3.0-1ubuntu2
ubuntu/gawk 1:5.0.1 dfsg-1
ubuntu/gcc-10-base 10.3.0-1ubuntu1~20.04
ubuntu/gcc-9-base 9.3.0-17ubuntu1~20.04
ubuntu/gcc-9 9.3.0-17ubuntu1~20.04
ubuntu/gcc 4:9.3.0-1ubuntu2
ubuntu/gfortran-9 9.3.0-17ubuntu1~20.04
ubuntu/gfortran 4:9.3.0-1ubuntu2
ubuntu/gir1.2-freedesktop 1.64.1-1~ubuntu20.04.1
ubuntu/gir1.2-glib-2.0 1.64.1-1~ubuntu20.04.1
ubuntu/gir1.2-harfbuzz-0.0 2.6.4-1ubuntu4
ubuntu/gir1.2-pango-1.0 1.44.7-2ubuntu4
ubuntu/git-man 1:2.25.1-1ubuntu3.2
ubuntu/git 1:2.25.1-1ubuntu3.2
ubuntu/glib-networking-common 2.64.2-1ubuntu0.1
ubuntu/glib-networking-services 2.64.2-1ubuntu0.1
ubuntu/glib-networking 2.64.2-1ubuntu0.1
ubuntu/gnome-desktop3-data 3.36.8-0ubuntu1
ubuntu/gpgv 2.2.19-3ubuntu2.1
ubuntu/grep 3.4-1
ubuntu/gsettings-desktop-schemas 3.36.0-1ubuntu1
ubuntu/gsfonts 1:8.11 urwcyr1.0.7~pre44-4.4
ubuntu/gstreamer1.0-plugins-base 1.16.2-4ubuntu0.1
ubuntu/gtk-update-icon-cache 3.24.20-0ubuntu1
ubuntu/gzip 1.10-0ubuntu4
ubuntu/hicolor-icon-theme 0.17-2
ubuntu/hostname 3.23
ubuntu/humanity-icon-theme 0.6.15
ubuntu/hunspell-en-us 1:2018.04.16-1
ubuntu/icu-devtools 66.1-2ubuntu2
ubuntu/imagemagick-6-common 8:6.9.10.23 dfsg-2.1ubuntu11.4
ubuntu/init-system-helpers 1.57
ubuntu/install-info 6.7.0.dfsg.2-5
ubuntu/iso-codes 4.4-1
ubuntu/java-common 0.72
ubuntu/ldap-utils 2.4.49 dfsg-2ubuntu1.8
ubuntu/less 551-1ubuntu0.1
ubuntu/libacl1 2.2.53-6
ubuntu/libapparmor1 2.13.3-7ubuntu5.1
ubuntu/libapt-pkg6.0 2.0.6
ubuntu/libarchive13 3.4.0-2ubuntu1
ubuntu/libargon2-1 0~20171227-0.2
ubuntu/libasan5 9.3.0-17ubuntu1~20.04
ubuntu/libasn1-8-heimdal 7.7.0 dfsg-1ubuntu1
ubuntu/libasound2-data 1.2.2-2.1ubuntu2.4
ubuntu/libasound2 1.2.2-2.1ubuntu2.4
ubuntu/libaspell15 0.60.8-1ubuntu0.1
ubuntu/libatk-bridge2.0-0 2.34.2-0ubuntu2~20.04.1
ubuntu/libatk1.0-0 2.35.1-1ubuntu2
ubuntu/libatk1.0-data 2.35.1-1ubuntu2
ubuntu/libatomic1 10.3.0-1ubuntu1~20.04
ubuntu/libatspi2.0-0 2.36.0-2
ubuntu/libattr1 1:2.4.48-5
ubuntu/libaudit-common 1:2.8.5-2ubuntu6
ubuntu/libaudit1 1:2.8.5-2ubuntu6
ubuntu/libavahi-client3 0.7-4ubuntu7.1
ubuntu/libavahi-common-data 0.7-4ubuntu7.1
ubuntu/libavahi-common3 0.7-4ubuntu7.1
ubuntu/libbasicobjects0 0.6.1-2
ubuntu/libbinutils 2.34-6ubuntu1.1
ubuntu/libblas-dev 3.9.0-1build1
ubuntu/libblas3 3.9.0-1build1
ubuntu/libblkid-dev 2.34-0.1ubuntu9.1
ubuntu/libblkid1 2.34-0.1ubuntu9.1
ubuntu/libbrotli1 1.0.7-6ubuntu0.1
ubuntu/libbsd0 0.10.0-1
ubuntu/libbz2-1.0 1.0.8-2
ubuntu/libbz2-dev 1.0.8-2
ubuntu/libc-ares2 1.15.0-1ubuntu0.1
ubuntu/libc-bin 2.31-0ubuntu9.2
ubuntu/libc-dev-bin 2.31-0ubuntu9.2
ubuntu/libc6-dev 2.31-0ubuntu9.2
ubuntu/libc6 2.31-0ubuntu9.2
ubuntu/libcairo-gobject2 1.16.0-4ubuntu1
ubuntu/libcairo-script-interpreter2 1.16.0-4ubuntu1
ubuntu/libcairo2-dev 1.16.0-4ubuntu1
ubuntu/libcairo2 1.16.0-4ubuntu1
ubuntu/libcap-ng0 0.7.9-2.1build1
ubuntu/libcap2-bin 1:2.32-1
ubuntu/libcap2 1:2.32-1
ubuntu/libcbor0.6 0.6.0-0ubuntu1
ubuntu/libcc1-0 10.3.0-1ubuntu1~20.04
ubuntu/libcdparanoia0 3.10.2 debian-13
ubuntu/libcollection4 0.6.1-2
ubuntu/libcolord2 1.4.4-2
ubuntu/libcom-err2 1.45.5-2ubuntu1
ubuntu/libcrack2 2.9.6-3.2
ubuntu/libcrypt-dev 1:4.4.10-10ubuntu4
ubuntu/libcrypt1 1:4.4.10-10ubuntu4
ubuntu/libcryptsetup12 2:2.2.2-3ubuntu2.3
ubuntu/libctf-nobfd0 2.34-6ubuntu1.1
ubuntu/libctf0 2.34-6ubuntu1.1
ubuntu/libcups2 2.3.1-9ubuntu1.1
ubuntu/libcurl3-gnutls 7.68.0-1ubuntu2.7
ubuntu/libcurl4-openssl-dev 7.68.0-1ubuntu2.7
ubuntu/libcurl4 7.68.0-1ubuntu2.7
ubuntu/libdatrie-dev 0.2.12-3
ubuntu/libdatrie1 0.2.12-3
ubuntu/libdb5.3 5.3.28 dfsg1-0.6ubuntu2
ubuntu/libdbus-1-3 1.12.16-2ubuntu2.1
ubuntu/libdconf1 0.36.0-1
ubuntu/libdebconfclient0 0.251ubuntu1
ubuntu/libdevmapper1.02.1 2:1.02.167-1ubuntu1
ubuntu/libdhash1 0.6.1-2
ubuntu/libdjvulibre-text 3.5.27.1-14ubuntu0.1
ubuntu/libdjvulibre21 3.5.27.1-14ubuntu0.1
ubuntu/libdpkg-perl 1.19.7ubuntu3
ubuntu/libdrm-amdgpu1 2.4.105-3~20.04.2
ubuntu/libdrm-common 2.4.105-3~20.04.2
ubuntu/libdrm-intel1 2.4.105-3~20.04.2
ubuntu/libdrm-nouveau2 2.4.105-3~20.04.2
ubuntu/libdrm-radeon1 2.4.105-3~20.04.2
ubuntu/libdrm2 2.4.105-3~20.04.2
ubuntu/libedit2 3.1-20191231-1
ubuntu/libelf1 0.176-1.1build1
ubuntu/libenchant-2-2 2.2.8-1ubuntu0.20.04.1
ubuntu/libepoxy0 1.5.4-1
ubuntu/liberror-perl 0.17029-1
ubuntu/libevdocument3-4 3.36.10-0ubuntu1
ubuntu/libevview3-3 3.36.10-0ubuntu1
ubuntu/libexpat1-dev 2.2.9-1build1
ubuntu/libexpat1 2.2.9-1build1
ubuntu/libext2fs2 1.45.5-2ubuntu1
ubuntu/libfdisk1 2.34-0.1ubuntu9.1
ubuntu/libffi-dev 3.3-4
ubuntu/libffi7 3.3-4
ubuntu/libfftw3-double3 3.3.8-2ubuntu1
ubuntu/libfido2-1 1.3.1-1ubuntu2
ubuntu/libfontconfig1-dev 2.13.1-2ubuntu3
ubuntu/libfontconfig1 2.13.1-2ubuntu3
ubuntu/libfontenc1 1:1.1.4-0ubuntu1
ubuntu/libfreetype-dev 2.10.1-2ubuntu0.1
ubuntu/libfreetype6-dev 2.10.1-2ubuntu0.1
ubuntu/libfreetype6 2.10.1-2ubuntu0.1
ubuntu/libfribidi-dev 1.0.8-2
ubuntu/libfribidi0 1.0.8-2
ubuntu/libgcc-9-dev 9.3.0-17ubuntu1~20.04
ubuntu/libgcc-s1 10.3.0-1ubuntu1~20.04
ubuntu/libgcrypt20 1.8.5-5ubuntu1.1
ubuntu/libgd3 2.2.5-5.2ubuntu2.1
ubuntu/libgdbm-compat4 1.18.1-5
ubuntu/libgdbm6 1.18.1-5
ubuntu/libgdk-pixbuf2.0-0 2.40.0 dfsg-3ubuntu0.2
ubuntu/libgdk-pixbuf2.0-common 2.40.0 dfsg-3ubuntu0.2
ubuntu/libgfortran-9-dev 9.3.0-17ubuntu1~20.04
ubuntu/libgfortran5 10.3.0-1ubuntu1~20.04
ubuntu/libgif7 5.1.9-1
ubuntu/libgirepository-1.0-1 1.64.1-1~ubuntu20.04.1
ubuntu/libgl1-mesa-dri 21.0.3-0ubuntu0.3~20.04.3
ubuntu/libgl1 1.3.2-1~ubuntu0.20.04.1
ubuntu/libglapi-mesa 21.0.3-0ubuntu0.3~20.04.3
ubuntu/libglib2.0-0 2.64.6-1~ubuntu20.04.4
ubuntu/libglib2.0-bin 2.64.6-1~ubuntu20.04.4
ubuntu/libglib2.0-data 2.64.6-1~ubuntu20.04.4
ubuntu/libglib2.0-dev-bin 2.64.6-1~ubuntu20.04.4
ubuntu/libglib2.0-dev 2.64.6-1~ubuntu20.04.4
ubuntu/libglvnd0 1.3.2-1~ubuntu0.20.04.1
ubuntu/libglx-mesa0 21.0.3-0ubuntu0.3~20.04.3
ubuntu/libglx0 1.3.2-1~ubuntu0.20.04.1
ubuntu/libgmp10 2:6.2.0 dfsg-4
ubuntu/libgnome-desktop-3-19 3.36.8-0ubuntu1
ubuntu/libgnutls30 3.6.13-2ubuntu1.6
ubuntu/libgomp1 10.3.0-1ubuntu1~20.04
ubuntu/libgpg-error0 1.37-1
ubuntu/libgpm2 1.20.7-5
ubuntu/libgraphite2-3 1.3.13-11build1
ubuntu/libgraphite2-dev 1.3.13-11build1
ubuntu/libgs9-common 9.50~dfsg-5ubuntu4.3
ubuntu/libgs9 9.50~dfsg-5ubuntu4.3
ubuntu/libgspell-1-2 1.8.3-1
ubuntu/libgspell-1-common 1.8.3-1
ubuntu/libgssapi-krb5-2 1.17-6ubuntu4.1
ubuntu/libgssapi3-heimdal 7.7.0 dfsg-1ubuntu1
ubuntu/libgstreamer-plugins-base1.0-0 1.16.2-4ubuntu0.1
ubuntu/libgstreamer1.0-0 1.16.2-2
ubuntu/libgtk-3-0 3.24.20-0ubuntu1
ubuntu/libgtk-3-common 3.24.20-0ubuntu1
ubuntu/libgxps2 0.3.1-1
ubuntu/libharfbuzz-dev 2.6.4-1ubuntu4
ubuntu/libharfbuzz-gobject0 2.6.4-1ubuntu4
ubuntu/libharfbuzz-icu0 2.6.4-1ubuntu4
ubuntu/libharfbuzz0b 2.6.4-1ubuntu4
ubuntu/libhcrypto4-heimdal 7.7.0 dfsg-1ubuntu1
ubuntu/libheimbase1-heimdal 7.7.0 dfsg-1ubuntu1
ubuntu/libheimntlm0-heimdal 7.7.0 dfsg-1ubuntu1
ubuntu/libhogweed5 3.5.1 really3.5.1-2ubuntu0.2
ubuntu/libhunspell-1.7-0 1.7.0-2build2
ubuntu/libhx509-5-heimdal 7.7.0 dfsg-1ubuntu1
ubuntu/libice-dev 2:1.0.10-0ubuntu1
ubuntu/libice6 2:1.0.10-0ubuntu1
ubuntu/libicu-dev 66.1-2ubuntu2
ubuntu/libicu66 66.1-2ubuntu2
ubuntu/libidn11 1.33-2.2ubuntu2
ubuntu/libidn2-0 2.2.0-2
ubuntu/libijs-0.35 0.35-15
ubuntu/libini-config5 0.6.1-2
ubuntu/libip4tc2 1.8.4-3ubuntu2
ubuntu/libipa-hbac0 2.2.3-3ubuntu0.7
ubuntu/libisl22 0.22.1-1
ubuntu/libitm1 10.3.0-1ubuntu1~20.04
ubuntu/libjansson4 2.12-1build1
ubuntu/libjbig-dev 2.1-3.1build1
ubuntu/libjbig0 2.1-3.1build1
ubuntu/libjbig2dec0 0.18-1ubuntu1
ubuntu/libjpeg-dev 8c-2ubuntu8
ubuntu/libjpeg-turbo8-dev 2.0.3-0ubuntu1.20.04.1
ubuntu/libjpeg-turbo8 2.0.3-0ubuntu1.20.04.1
ubuntu/libjpeg8-dev 8c-2ubuntu8
ubuntu/libjpeg8 8c-2ubuntu8
ubuntu/libjson-c4 0.13.1 dfsg-7ubuntu0.3
ubuntu/libjson-glib-1.0-0 1.4.4-2ubuntu2
ubuntu/libjson-glib-1.0-common 1.4.4-2ubuntu2
ubuntu/libk5crypto3 1.17-6ubuntu4.1
ubuntu/libkeyutils1 1.6-6ubuntu1
ubuntu/libkmod2 27-1ubuntu2
ubuntu/libkpathsea6 2019.20190605.51237-3build2
ubuntu/libkrb5-26-heimdal 7.7.0 dfsg-1ubuntu1
ubuntu/libkrb5-3 1.17-6ubuntu4.1
ubuntu/libkrb5support0 1.17-6ubuntu4.1
ubuntu/liblapack-dev 3.9.0-1build1
ubuntu/liblapack3 3.9.0-1build1
ubuntu/liblcms2-2 2.9-4
ubuntu/libldap-2.4-2 2.4.49 dfsg-2ubuntu1.8
ubuntu/libldap-common 2.4.49 dfsg-2ubuntu1.8
ubuntu/libldb2 2:2.0.10-0ubuntu0.20.04.3
ubuntu/libllvm12 1:12.0.0-3ubuntu1~20.04.4
ubuntu/liblmdb0 0.9.24-1
ubuntu/liblqr-1-0 0.4.2-2.1
ubuntu/liblsan0 10.3.0-1ubuntu1~20.04
ubuntu/libltdl7 2.4.6-14
ubuntu/liblz4-1 1.9.2-2ubuntu0.20.04.1
ubuntu/liblzma-dev 5.2.4-1ubuntu1
ubuntu/liblzma5 5.2.4-1ubuntu1
ubuntu/liblzo2-2 2.10-2
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ubuntu/openjdk-11-jre-headless 11.0.11 9-0ubuntu2~20.04
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ubuntu/xauth 1:1.1-0ubuntu1
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ubuntu/zlib1g 1:1.2.11.dfsg-2ubuntu1.2

bash 5.0.17
python 3.9.5

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github.com/MakeNowJust/heredoc v1.0.0
github.com/alecthomas/chroma v0.8.2
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github.com/briandowns/spinner v1.13.0
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github.com/cli/cli/v2 (devel)
github.com/cli/crypto v0.0.0-20210929142629-6be313f59b03
github.com/cli/oauth v0.8.0
github.com/cli/safeexec v1.0.0
github.com/cli/shurcooL-graphql v0.0.0-20200707151639-0f7232a2bf7e
github.com/danwakefield/fnmatch v0.0.0-20160403171240-cbb64ac3d964
github.com/davecgh/go-spew v1.1.1
github.com/dlclark/regexp2 v1.2.0
github.com/fatih/camelcase v1.0.0
github.com/fatih/color v1.7.0
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github.com/mattn/go-colorable v0.1.11
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github.com/microcosm-cc/bluemonday v1.0.6
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github.com/opentracing/opentracing-go v1.1.0
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gopkg.in/yaml.v3 v3.0.0-20210107192922-496545a6307b
stdlib 1.16.9

KetCindyPlugin:KetCindyPlugin *
barclay:barclay 2.0.0
biz.aQute.bnd:biz.aQute.bndlib 4.0.0
bsh:bsh 2.0b6
ch.qos.cal10n:cal10n-api 0.8.1
ch.qos.logback:logback-classic 1.1.2
ch.qos.logback:logback-core 1.1.2
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com.amazonaws:aws-java-sdk-kms 1.11.407
com.amazonaws:aws-java-sdk-s3 1.11.407
com.amazonaws:jmespath-java 1.11.407
com.esotericsoftware.kryo:kryo 2.24.0
com.esotericsoftware.minlog:minlog 1.2
com.esotericsoftware.reflectasm:reflectasm 1.09
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com.fasterxml.jackson.core:jackson-core 2.9.8
com.fasterxml.jackson.core:jackson-core 2.9.9
com.fasterxml.jackson.core:jackson-databind 2.9.8
com.github.cereda.arara.Arara:arara *
com.google.api-client:google-api-client 1.30.2
com.google.api-client:googleapis 1.25.0
com.google.apis:google-api-services-storage v1-rev136-1.25.0
com.google.apis:google-api-services-storage v1-rev20190624-1.30.1
com.google.auth:google-auth-library-credentials 0.17.1
com.google.auth:google-auth-library-oauth2-http 0.17.1
com.google.auto.value:auto-value-annotations 1.6.6
com.google.cloud:google-cloud-core-http 1.89.0
com.google.cloud:google-cloud-core 1.89.0
com.google.cloud:google-cloud-nio 0.107.0-alpha
com.google.cloud:google-cloud-storage 1.89.0
com.google.code.findbugs:jsr305 3.0.2
com.google.code.gson:gson 2.8.1
com.google.code.gson:gson 2.8.5
com.google.errorprone:error_prone_annotations 2.3.3
com.google.gson:gson 2.2.2
com.google.guava:failureaccess 1.0.1
com.google.guava:guava 15.0
com.google.guava:guava 19.0
com.google.guava:guava 27.1-android
com.google.guava:guava 28.0-android
com.google.guava:listenablefuture 9999.0-empty-to-avoid-conflict-with-guava
com.google.http-client:google-http-client-appengine 1.31.0
com.google.http-client:google-http-client-jackson2 1.25.0
com.google.http-client:google-http-client-jackson2 1.31.0
com.google.http-client:google-http-client 1.25.0
com.google.http-client:google-http-client 1.31.0
com.google.j2objc:j2objc-annotations 1.3
com.google.oauth-client:google-oauth-client 1.25.0
com.google.oauth-client:google-oauth-client 1.30.1
com.google.protobuf:protobuf-java-util 3.9.1
com.google.protobuf:protobuf-java 3.9.1
com.googlecode.jatl:jatl 0.2.3
com.googlecode.javaewah:JavaEWAH 1.1.6
com.googlecode.json-simple:json-simple 1.1.1
com.googlecode.plist:dd-plist 1.21
com.jcraft:jsch 0.1.54
com.jcraft:jsch 0.1.55
com.jcraft:jzlib 1.1.1
com.jcraft:jzlib 1.1.3
com.latex2nemeth.bootstrap.Latex2NemethApplication:latex2nemeth-v1 0.1
com.latex2nemeth:latex2nemeth v1.0
com.moandjiezana.toml:toml4j 0.7.2
com.sun.xml.bind:jaxb-impl 2.3.1
com/dickimawbooks/texosquery/TeXOSQueryJRE5:texosquery-jre5 *
com/dickimawbooks/texosquery/TeXOSQueryJRE7:texosquery *
com/dickimawbooks/texosquery/TeXOSQueryJRE8:texosquery-jre8 *
commons-beanutils:commons-beanutils 1.8.0
commons-cli:commons-cli 1.3.1
commons-codec:commons-codec 1.11
commons-codec:commons-codec 1.6
commons-collections:commons-collections 3.2.1
commons-io:commons-io 2.2
commons-io:commons-io 2.4
commons-io:commons-io 2.6
commons-lang:commons-lang 2.4
commons-lang:commons-lang 2.6
commons-logging:commons-logging 1.1.1
commons-logging:commons-logging 1.1.3
commons-logging:commons-logging 1.2
coveralls-gradle-plugin:coveralls-gradle-plugin 2.6.3
fastutil:fastutil 8.2.1-min
gatk-native-bindings:gatk-native-bindings 0.1.0-rc-1
gkl:gkl 0.8.5
google-api-services-storage-v1-rev136:google-api-services-storage-v1-rev136 1.25.0
gradle-announce:gradle-announce 5.6
gradle-antlr:gradle-antlr 5.6
gradle-api-metadata:gradle-api-metadata 5.6
gradle-base-services-groovy:gradle-base-services-groovy 5.6
gradle-base-services:gradle-base-services 5.6
gradle-bootstrap:gradle-bootstrap 5.6
gradle-build-cache-http:gradle-build-cache-http 5.6
gradle-build-cache-packaging:gradle-build-cache-packaging 5.6
gradle-build-cache:gradle-build-cache 5.6
gradle-build-comparison:gradle-build-comparison 5.6
gradle-build-init:gradle-build-init 5.6
gradle-build-option:gradle-build-option 5.6
gradle-build-profile:gradle-build-profile 5.6
gradle-cli:gradle-cli 5.6
gradle-code-quality:gradle-code-quality 5.6
gradle-composite-builds:gradle-composite-builds 5.6
gradle-core-api:gradle-core-api 5.6
gradle-core:gradle-core 5.6
gradle-dependency-management:gradle-dependency-management 5.6
gradle-diagnostics:gradle-diagnostics 5.6
gradle-docs:gradle-docs 5.6
gradle-ear:gradle-ear 5.6
gradle-execution:gradle-execution 5.6
gradle-file-collections:gradle-file-collections 5.6
gradle-files:gradle-files 5.6
gradle-git-publish:gradle-git-publish 2.1.1
gradle-git-version:gradle-git-version 0.5.1
gradle-hashing:gradle-hashing 5.6
gradle-ide-native:gradle-ide-native 5.6
gradle-ide-play:gradle-ide-play 5.6
gradle-ide:gradle-ide 5.6
gradle-installation-beacon:gradle-installation-beacon 5.6
gradle-instant-execution:gradle-instant-execution 5.6
gradle-ivy:gradle-ivy 5.6
gradle-jacoco:gradle-jacoco 5.6
gradle-javascript:gradle-javascript 5.6
gradle-jvm-services:gradle-jvm-services 5.6
gradle-kotlin-dsl-provider-plugins:gradle-kotlin-dsl-provider-plugins 5.6
gradle-kotlin-dsl-tooling-builders:gradle-kotlin-dsl-tooling-builders 5.6
gradle-kotlin-dsl-tooling-models:gradle-kotlin-dsl-tooling-models 5.6
gradle-kotlin-dsl:gradle-kotlin-dsl 5.6
gradle-language-groovy:gradle-language-groovy 5.6
gradle-language-java:gradle-language-java 5.6
gradle-language-jvm:gradle-language-jvm 5.6
gradle-language-native:gradle-language-native 5.6
gradle-language-scala:gradle-language-scala 5.6
gradle-logging:gradle-logging 5.6
gradle-maven:gradle-maven 5.6
gradle-messaging:gradle-messaging 5.6
gradle-model-core:gradle-model-core 5.6
gradle-model-groovy:gradle-model-groovy 5.6
gradle-native:gradle-native 5.6
gradle-osgi:gradle-osgi 5.6
gradle-persistent-cache:gradle-persistent-cache 5.6
gradle-pineapple:gradle-pineapple 5.6
gradle-platform-base:gradle-platform-base 5.6
gradle-platform-jvm:gradle-platform-jvm 5.6
gradle-platform-native:gradle-platform-native 5.6
gradle-platform-play:gradle-platform-play 5.6
gradle-plugin-development:gradle-plugin-development 5.6
gradle-plugin-use:gradle-plugin-use 5.6
gradle-plugins:gradle-plugins 5.6
gradle-process-services:gradle-process-services 5.6
gradle-publish:gradle-publish 5.6
gradle-reporting:gradle-reporting 5.6
gradle-resources-gcs:gradle-resources-gcs 5.6
gradle-resources-http:gradle-resources-http 5.6
gradle-resources-s3:gradle-resources-s3 5.6
gradle-resources-sftp:gradle-resources-sftp 5.6
gradle-resources:gradle-resources 5.6
gradle-runtime-api-info:gradle-runtime-api-info 5.6
gradle-scala:gradle-scala 5.6
gradle-signing:gradle-signing 5.6
gradle-snapshots:gradle-snapshots 5.6
gradle-test-kit:gradle-test-kit 5.6
gradle-testing-base:gradle-testing-base 5.6
gradle-testing-junit-platform:gradle-testing-junit-platform 5.6
gradle-testing-jvm:gradle-testing-jvm 5.6
gradle-testing-native:gradle-testing-native 5.6
gradle-tooling-api-builders:gradle-tooling-api-builders 5.6
gradle-tooling-api:gradle-tooling-api 5.6
gradle-tooling-native:gradle-tooling-native 5.6
gradle-version-control:gradle-version-control 5.6
gradle-worker-processes:gradle-worker-processes 5.6
gradle-workers:gradle-workers 5.6
gradle-wrapper:gradle-wrapper *
gradle-wrapper:gradle-wrapper 5.6
hamcrest-core:hamcrest-core 1.3
htsjdk:htsjdk 2.21.0
javax.annotation:javax.annotation-api 1.3.2
jcifs:jcifs 1.3.17
jcommander:jcommander 1.72
joda-time:joda-time 2.10
jrt-fs:jrt-fs 11.0.11
json-lib:json-lib 2.3-jdk15
junit:junit 4.12
kotlin-compiler-embeddable:kotlin-compiler-embeddable 1.3.41-patched-for-gradle-5.6
kotlin-reflect:kotlin-reflect 1.3.41
kotlin-sam-with-receiver-compiler-plugin:kotlin-sam-with-receiver-compiler-plugin 1.3.41
kotlin-script-runtime:kotlin-script-runtime 1.3.41
kotlin-scripting-compiler-embeddable:kotlin-scripting-compiler-embeddable 1.3.41
kotlin-scripting-compiler-impl-embeddable:kotlin-scripting-compiler-impl-embeddable 1.3.41
kotlin-stdlib-common:kotlin-stdlib-common 1.3.41
kotlin-stdlib-jdk7:kotlin-stdlib-jdk7 1.3.41
kotlin-stdlib-jdk8:kotlin-stdlib-jdk8 1.3.41
kotlin-stdlib:kotlin-stdlib 1.3.41
kotlinx-metadata-jvm:kotlinx-metadata-jvm 0.1.0
native-platform-freebsd-amd64-libcpp:native-platform-freebsd-amd64-libcpp 0.18
native-platform-freebsd-amd64-libstdcpp:native-platform-freebsd-amd64-libstdcpp 0.18
native-platform-freebsd-i386-libcpp:native-platform-freebsd-i386-libcpp 0.18
native-platform-freebsd-i386-libstdcpp:native-platform-freebsd-i386-libstdcpp 0.18
native-platform-linux-aarch64-ncurses5:native-platform-linux-aarch64-ncurses5 0.18
native-platform-linux-aarch64:native-platform-linux-aarch64 0.18
native-platform-linux-amd64-ncurses5:native-platform-linux-amd64-ncurses5 0.18
native-platform-linux-amd64-ncurses6:native-platform-linux-amd64-ncurses6 0.18
native-platform-linux-amd64:native-platform-linux-amd64 0.18
native-platform-linux-i386-ncurses5:native-platform-linux-i386-ncurses5 0.18
native-platform-linux-i386-ncurses6:native-platform-linux-i386-ncurses6 0.18
native-platform-linux-i386:native-platform-linux-i386 0.18
native-platform-osx-amd64:native-platform-osx-amd64 0.18
native-platform-windows-amd64-min:native-platform-windows-amd64-min 0.18
native-platform-windows-amd64:native-platform-windows-amd64 0.18
native-platform-windows-i386-min:native-platform-windows-i386-min 0.18
native-platform-windows-i386:native-platform-windows-i386 0.18
native-platform:native-platform 0.18
nekohtml:nekohtml 1.9.16
nekohtml:nekohtml 1.9.22
net.sf.ezmorph:ezmorph 1.0.6
net.sf.jopt-simple:jopt-simple 5.0.3
ngs-java:ngs-java 2.9.0
org.ajoberstar.grgit.gradle:grgit-gradle 4.0.0-rc.1
org.ajoberstar.grgit:grgit-core 4.0.0-rc.1
org.apache.ant:ant-launcher 1.10.7
org.apache.ant:ant-launcher 1.9.14
org.apache.ant:ant-launcher 1.9.7
org.apache.ant:ant 1.10.7
org.apache.ant:ant 1.9.14
org.apache.ant:ant 1.9.7
org.apache.commons:commons-collections4 4.0
org.apache.commons:commons-collections4 4.3
org.apache.commons:commons-compress 1.18
org.apache.commons:commons-compress 1.4.1
org.apache.commons:commons-jexl 2.1.1
org.apache.commons:commons-lang3 3.4
org.apache.commons:commons-lang3 3.8.1
org.apache.commons:commons-math3 3.5
org.apache.httpcomponents:httpclient 4.3.6
org.apache.httpcomponents:httpclient 4.5.6
org.apache.httpcomponents:httpclient 4.5.9
org.apache.httpcomponents:httpcore 4.3.3
org.apache.httpcomponents:httpcore 4.4.10
org.apache.httpcomponents:httpcore 4.4.11
org.apache.httpcomponents:httpmime 4.3
org.apache.logging.log4j:log4j-api 2.11.0
org.apache.logging.log4j:log4j-api 2.5
org.apache.logging.log4j:log4j-core 2.11.0
org.apache.logging.log4j:log4j-core 2.5
org.apache.maven.wagon:wagon-file 3.0.0
org.apache.maven.wagon:wagon-http-shared 3.0.0
org.apache.maven.wagon:wagon-http 3.0.0
org.apache.maven.wagon:wagon-provider-api 3.0.0
org.apache.maven:maven-aether-provider 3.0.4
org.apache.maven:maven-artifact 3.0.4
org.apache.maven:maven-compat 3.0.4
org.apache.maven:maven-core 3.0.4
org.apache.maven:maven-model-builder 3.0.4
org.apache.maven:maven-model 3.0.4
org.apache.maven:maven-plugin-api 3.0.4
org.apache.maven:maven-repository-metadata 3.0.4
org.apache.maven:maven-settings-builder 3.0.4
org.apache.maven:maven-settings 3.0.4
org.apache.tools.ant.Main:ant-bootstrap *
org.apache.velocity:velocity-engine-core 2.1
org.apache.xbean:xbean-reflect 3.7
org.apache.xerces.impl.Version:xercesImpl 2.12.0
org.apache.xerces.impl.Version:xercesImpl 2.9.1
org.apache.xml.resolver.Catalog:xml-resolver 1.2
org.apache.xmlcommons.Version:xml-apis 1.3.04
org.apache.xmlcommons.Version:xml-apis 1.4.01
org.apache:ivy 2.3.0
org.apiguardian.api:apiguardian-api 1.0.0
org.bouncycastle:bcpg-jdk15on 1.61
org.bouncycastle:bcpkix-jdk15on 1.61
org.bouncycastle:bcprov-jdk15on 1.61
org.codehaus.groovy.modules.http-builder:http-builder 0.7.1
org.codehaus.groovy:groovy-all 1.3-2.5.4
org.codehaus.mojo:animal-sniffer-annotations 1.18
org.codehaus.plexus:plexus-classworlds 2.5.1
org.codehaus.plexus:plexus-component-annotations 1.5.5
org.codehaus.plexus:plexus-container-default 1.7.1
org.codehaus.plexus:plexus-interpolation 1.14
org.codehaus.plexus:plexus-utils 3.0.24
org.codehaus.plexus:plexus-utils 3.1.0
org.daisy.libs:jing 20120724.0.0
org.debian.security.UpdateCertificates:ca-certificates-java *
org.eclipse.jgit:org.eclipse.jgit 5.0.3.201809091024-r
org.eclipse.jgit:org.eclipse.jgit 5.5.0.201909110433-r
org.freemarker.freemarker:freemarker 2.3.23
org.fusesource.hawtjni:hawtjni-runtime 1.16
org.fusesource.jansi:jansi-freebsd32 1.8
org.fusesource.jansi:jansi-freebsd64 1.8
org.fusesource.jansi:jansi-linux32 1.8
org.fusesource.jansi:jansi-linux64 1.8
org.fusesource.jansi:jansi-native 1.8
org.fusesource.jansi:jansi-osx 1.8
org.fusesource.jansi:jansi-windows32 1.8
org.fusesource.jansi:jansi-windows64 1.8
org.fusesource.jansi:jansi 1.17.1
org.glassfish.jaxb:jaxb-runtime 2.3.1
org.gradle.launcher.GradleMain:gradle-launcher 5.6
org.islandoftex.texplate:texplate 1.0.2
org.jdom2:jdom2 2.0.6
org.jetbrains:annotations 13.0
org.junit.platform.commons:junit-platform-commons 1.3.1
org.junit.platform.engine:junit-platform-engine 1.3.1
org.junit.platform.launcher:junit-platform-launcher 1.3.1
org.mozilla.javascript.tools.shell.Main:rhino 1.7.10
org.mvel:mvel2 2.2.8.Final
org.objectweb.asm.commons:asm-commons 7.0-beta
org.objectweb.asm.commons:asm-commons 7.1
org.objectweb.asm.tree.analysis:asm-analysis 7.0-beta
org.objectweb.asm.tree.analysis:asm-analysis 7.1
org.objectweb.asm.tree:asm-tree 7.0-beta
org.objectweb.asm.tree:asm-tree 7.1
org.objectweb.asm.util:asm-util 7.1
org.objectweb.asm:asm 7.0-beta
org.objectweb.asm:asm 7.1
org.objenesis:objenesis 2.6
org.opentest4j:opentest4j 1.1.1
org.simpleframework:simple-xml 2.7.1
org.simpleframework:simple 4.1.21
org.slf4j:jcl-over-slf4j 1.7.25
org.slf4j:jul-to-slf4j 1.7.25
org.slf4j:log4j-over-slf4j 1.7.25
org.slf4j:slf4j-api 1.7.12
org.slf4j:slf4j-api 1.7.2
org.slf4j:slf4j-api 1.7.25
org.slf4j:slf4j-api 1.7.30
org.slf4j:slf4j-api 1.7.7
org.slf4j:slf4j-simple 1.7.12
org.slf4j:slf4j-simple 1.7.30
org.sonatype.aether:aether-api 1.13.1
org.sonatype.aether:aether-connector-wagon 1.13.1
org.sonatype.aether:aether-impl 1.13.1
org.sonatype.aether:aether-spi 1.13.1
org.sonatype.aether:aether-util 1.13.1
org.sonatype.plexus:plexus-cipher 1.7
org.sonatype.plexus:plexus-sec-dispatcher 1.3
org.sonatype.pmaven:pmaven-common 0.8-SNAPSHOT
org.sonatype.pmaven:pmaven-groovy 0.8-SNAPSHOT
org.testng:testng 6.3.1
org.threeten:threetenbp 1.3.3
org.tukaani.xz:xz 1.5
org.vafer:jdependency 2.1.1
org.xerial.snappy.SnappyBundleActivator:snappy-java 1.1.4
org.yaml:snakeyaml 1.17
picard:picard 2.21.6-SNAPSHOT
picard:picard 2.21.6-SNAPSHOT-all
shadow:shadow 5.1.0
software.amazon.ion:ion-java 1.0.2
trove4j:trove4j 1.0.20181211

flask 0.10.1