dhspence/docker-genomic-analysis-lite : 102321

Latest release: almost 4 years ago - 35 downloads - 397 dependencies

JSON

Dependencies

bash 5.0.17
python 3.8.10

KetCindyPlugin:KetCindyPlugin *
barclay:barclay 2.0.0
biz.aQute.bnd:biz.aQute.bndlib 4.0.0
bsh:bsh 2.0b6
ch.qos.cal10n:cal10n-api 0.8.1
ch.qos.logback:logback-classic 1.1.2
ch.qos.logback:logback-core 1.1.2
com.amazonaws:aws-java-sdk-core 1.11.407
com.amazonaws:aws-java-sdk-kms 1.11.407
com.amazonaws:aws-java-sdk-s3 1.11.407
com.amazonaws:jmespath-java 1.11.407
com.esotericsoftware.kryo:kryo 2.24.0
com.esotericsoftware.minlog:minlog 1.2
com.esotericsoftware.reflectasm:reflectasm 1.09
com.fasterxml.jackson.core:jackson-annotations 2.9.8
com.fasterxml.jackson.core:jackson-core 2.9.8
com.fasterxml.jackson.core:jackson-core 2.9.9
com.fasterxml.jackson.core:jackson-databind 2.9.8
com.github.cereda.arara.Arara:arara *
com.google.api-client:google-api-client 1.30.2
com.google.api-client:googleapis 1.25.0
com.google.apis:google-api-services-storage v1-rev136-1.25.0
com.google.apis:google-api-services-storage v1-rev20190624-1.30.1
com.google.auth:google-auth-library-credentials 0.17.1
com.google.auth:google-auth-library-oauth2-http 0.17.1
com.google.auto.value:auto-value-annotations 1.6.6
com.google.cloud:google-cloud-core-http 1.89.0
com.google.cloud:google-cloud-core 1.89.0
com.google.cloud:google-cloud-nio 0.107.0-alpha
com.google.cloud:google-cloud-storage 1.89.0
com.google.code.findbugs:jsr305 3.0.2
com.google.code.gson:gson 2.8.1
com.google.code.gson:gson 2.8.5
com.google.errorprone:error_prone_annotations 2.3.3
com.google.gson:gson 2.2.2
com.google.guava:failureaccess 1.0.1
com.google.guava:guava 15.0
com.google.guava:guava 19.0
com.google.guava:guava 27.1-android
com.google.guava:guava 28.0-android
com.google.guava:listenablefuture 9999.0-empty-to-avoid-conflict-with-guava
com.google.http-client:google-http-client-appengine 1.31.0
com.google.http-client:google-http-client-jackson2 1.25.0
com.google.http-client:google-http-client-jackson2 1.31.0
com.google.http-client:google-http-client 1.25.0
com.google.http-client:google-http-client 1.31.0
com.google.j2objc:j2objc-annotations 1.3
com.google.oauth-client:google-oauth-client 1.30.1
com.google.oauth-client:oauth-client 1.25.0
com.google.protobuf:protobuf-java-util 3.9.1
com.google.protobuf:protobuf-java 3.9.1
com.googlecode.jatl:jatl 0.2.3
com.googlecode.javaewah:JavaEWAH 1.1.6
com.googlecode.json-simple:json-simple 1.1.1
com.googlecode.plist:dd-plist 1.21
com.jcraft:jsch 0.1.54
com.jcraft:jsch 0.1.55
com.jcraft:jzlib 1.1.1
com.jcraft:jzlib 1.1.3
com.latex2nemeth.bootstrap.Latex2NemethApplication:latex2nemeth-v1 0.1
com.latex2nemeth:latex2nemeth v1.0
com.moandjiezana.toml:toml4j 0.7.2
com.sun.xml.bind:jaxb-impl 2.3.1
com/dickimawbooks/texosquery/TeXOSQueryJRE5:texosquery-jre5 *
com/dickimawbooks/texosquery/TeXOSQueryJRE7:texosquery *
com/dickimawbooks/texosquery/TeXOSQueryJRE8:texosquery-jre8 *
commons-beanutils:commons-beanutils 1.8.0
commons-cli:commons-cli 1.3.1
commons-codec:commons-codec 1.11
commons-codec:commons-codec 1.6
commons-collections:commons-collections 3.2.1
commons-io:commons-io 2.2
commons-io:commons-io 2.4
commons-io:commons-io 2.6
commons-lang:commons-lang 2.4
commons-lang:commons-lang 2.6
commons-logging:commons-logging 1.1.1
commons-logging:commons-logging 1.1.3
commons-logging:commons-logging 1.2
coveralls-gradle-plugin:coveralls-gradle-plugin 2.6.3
fastutil:fastutil 8.2.1-min
gatk-native-bindings:gatk-native-bindings 0.1.0-rc-1
gkl:gkl 0.8.5
google-api-services-storage-v1-rev136:google-api-services-storage-v1-rev136 1.25.0
gradle-announce:gradle-announce 5.6
gradle-antlr:gradle-antlr 5.6
gradle-api-metadata:gradle-api-metadata 5.6
gradle-base-services-groovy:gradle-base-services-groovy 5.6
gradle-base-services:gradle-base-services 5.6
gradle-bootstrap:gradle-bootstrap 5.6
gradle-build-cache-http:gradle-build-cache-http 5.6
gradle-build-cache-packaging:gradle-build-cache-packaging 5.6
gradle-build-cache:gradle-build-cache 5.6
gradle-build-comparison:gradle-build-comparison 5.6
gradle-build-init:gradle-build-init 5.6
gradle-build-option:gradle-build-option 5.6
gradle-build-profile:gradle-build-profile 5.6
gradle-cli:gradle-cli 5.6
gradle-code-quality:gradle-code-quality 5.6
gradle-composite-builds:gradle-composite-builds 5.6
gradle-core-api:gradle-core-api 5.6
gradle-core:gradle-core 5.6
gradle-dependency-management:gradle-dependency-management 5.6
gradle-diagnostics:gradle-diagnostics 5.6
gradle-docs:gradle-docs 5.6
gradle-ear:gradle-ear 5.6
gradle-execution:gradle-execution 5.6
gradle-file-collections:gradle-file-collections 5.6
gradle-files:gradle-files 5.6
gradle-git-publish:gradle-git-publish 2.1.1
gradle-git-version:gradle-git-version 0.5.1
gradle-hashing:gradle-hashing 5.6
gradle-ide-native:gradle-ide-native 5.6
gradle-ide-play:gradle-ide-play 5.6
gradle-ide:gradle-ide 5.6
gradle-installation-beacon:gradle-installation-beacon 5.6
gradle-instant-execution:gradle-instant-execution 5.6
gradle-ivy:gradle-ivy 5.6
gradle-jacoco:gradle-jacoco 5.6
gradle-javascript:gradle-javascript 5.6
gradle-jvm-services:gradle-jvm-services 5.6
gradle-kotlin-dsl-provider-plugins:gradle-kotlin-dsl-provider-plugins 5.6
gradle-kotlin-dsl-tooling-builders:gradle-kotlin-dsl-tooling-builders 5.6
gradle-kotlin-dsl-tooling-models:gradle-kotlin-dsl-tooling-models 5.6
gradle-kotlin-dsl:gradle-kotlin-dsl 5.6
gradle-language-groovy:gradle-language-groovy 5.6
gradle-language-java:gradle-language-java 5.6
gradle-language-jvm:gradle-language-jvm 5.6
gradle-language-native:gradle-language-native 5.6
gradle-language-scala:gradle-language-scala 5.6
gradle-logging:gradle-logging 5.6
gradle-maven:gradle-maven 5.6
gradle-messaging:gradle-messaging 5.6
gradle-model-core:gradle-model-core 5.6
gradle-model-groovy:gradle-model-groovy 5.6
gradle-native:gradle-native 5.6
gradle-osgi:gradle-osgi 5.6
gradle-persistent-cache:gradle-persistent-cache 5.6
gradle-pineapple:gradle-pineapple 5.6
gradle-platform-base:gradle-platform-base 5.6
gradle-platform-jvm:gradle-platform-jvm 5.6
gradle-platform-native:gradle-platform-native 5.6
gradle-platform-play:gradle-platform-play 5.6
gradle-plugin-development:gradle-plugin-development 5.6
gradle-plugin-use:gradle-plugin-use 5.6
gradle-plugins:gradle-plugins 5.6
gradle-process-services:gradle-process-services 5.6
gradle-publish:gradle-publish 5.6
gradle-reporting:gradle-reporting 5.6
gradle-resources-gcs:gradle-resources-gcs 5.6
gradle-resources-http:gradle-resources-http 5.6
gradle-resources-s3:gradle-resources-s3 5.6
gradle-resources-sftp:gradle-resources-sftp 5.6
gradle-resources:gradle-resources 5.6
gradle-runtime-api-info:gradle-runtime-api-info 5.6
gradle-scala:gradle-scala 5.6
gradle-signing:gradle-signing 5.6
gradle-snapshots:gradle-snapshots 5.6
gradle-test-kit:gradle-test-kit 5.6
gradle-testing-base:gradle-testing-base 5.6
gradle-testing-junit-platform:gradle-testing-junit-platform 5.6
gradle-testing-jvm:gradle-testing-jvm 5.6
gradle-testing-native:gradle-testing-native 5.6
gradle-tooling-api-builders:gradle-tooling-api-builders 5.6
gradle-tooling-api:gradle-tooling-api 5.6
gradle-tooling-native:gradle-tooling-native 5.6
gradle-version-control:gradle-version-control 5.6
gradle-worker-processes:gradle-worker-processes 5.6
gradle-workers:gradle-workers 5.6
gradle-wrapper:gradle-wrapper *
gradle-wrapper:gradle-wrapper 5.6
groovy-all:groovy-all 1.3-2.5.4
hamcrest-core:hamcrest-core 1.3
htsjdk:htsjdk 2.21.0
javax.annotation:javax.annotation-api 1.3.2
jcifs:jcifs 1.3.17
jcommander:jcommander 1.72
joda-time:joda-time 2.10
jrt-fs:jrt-fs 11.0.11
json-lib:json-lib 2.3-jdk15
junit:junit 4.12
kotlin-compiler-embeddable:kotlin-compiler-embeddable 1.3.41-patched-for-gradle-5.6
kotlin-reflect:kotlin-reflect 1.3.41
kotlin-sam-with-receiver-compiler-plugin:kotlin-sam-with-receiver-compiler-plugin 1.3.41
kotlin-script-runtime:kotlin-script-runtime 1.3.41
kotlin-scripting-compiler-embeddable:kotlin-scripting-compiler-embeddable 1.3.41
kotlin-scripting-compiler-impl-embeddable:kotlin-scripting-compiler-impl-embeddable 1.3.41
kotlin-stdlib-common:kotlin-stdlib-common 1.3.41
kotlin-stdlib-jdk7:kotlin-stdlib-jdk7 1.3.41
kotlin-stdlib-jdk8:kotlin-stdlib-jdk8 1.3.41
kotlin-stdlib:kotlin-stdlib 1.3.41
kotlinx-metadata-jvm:kotlinx-metadata-jvm 0.1.0
native-platform-freebsd-amd64-libcpp:native-platform-freebsd-amd64-libcpp 0.18
native-platform-freebsd-amd64-libstdcpp:native-platform-freebsd-amd64-libstdcpp 0.18
native-platform-freebsd-i386-libcpp:native-platform-freebsd-i386-libcpp 0.18
native-platform-freebsd-i386-libstdcpp:native-platform-freebsd-i386-libstdcpp 0.18
native-platform-linux-aarch64-ncurses5:native-platform-linux-aarch64-ncurses5 0.18
native-platform-linux-aarch64:native-platform-linux-aarch64 0.18
native-platform-linux-amd64-ncurses5:native-platform-linux-amd64-ncurses5 0.18
native-platform-linux-amd64-ncurses6:native-platform-linux-amd64-ncurses6 0.18
native-platform-linux-amd64:native-platform-linux-amd64 0.18
native-platform-linux-i386-ncurses5:native-platform-linux-i386-ncurses5 0.18
native-platform-linux-i386-ncurses6:native-platform-linux-i386-ncurses6 0.18
native-platform-linux-i386:native-platform-linux-i386 0.18
native-platform-osx-amd64:native-platform-osx-amd64 0.18
native-platform-windows-amd64-min:native-platform-windows-amd64-min 0.18
native-platform-windows-amd64:native-platform-windows-amd64 0.18
native-platform-windows-i386-min:native-platform-windows-i386-min 0.18
native-platform-windows-i386:native-platform-windows-i386 0.18
native-platform:native-platform 0.18
nekohtml:nekohtml 1.9.16
nekohtml:nekohtml 1.9.22
net.sf.ezmorph:ezmorph 1.0.6
net.sf.jopt-simple:jopt-simple 5.0.3
ngs-java:ngs-java 2.9.0
org.ajoberstar.grgit.gradle:grgit-gradle 4.0.0-rc.1
org.ajoberstar.grgit:grgit-core 4.0.0-rc.1
org.apache.ant:ant-launcher 1.10.7
org.apache.ant:ant-launcher 1.9.14
org.apache.ant:ant-launcher 1.9.7
org.apache.ant:ant 1.10.7
org.apache.ant:ant 1.9.14
org.apache.ant:ant 1.9.7
org.apache.commons:commons-collections4 4.0
org.apache.commons:commons-collections4 4.3
org.apache.commons:commons-compress 1.18
org.apache.commons:commons-compress 1.4.1
org.apache.commons:commons-jexl 2.1.1
org.apache.commons:commons-lang3 3.4
org.apache.commons:commons-lang3 3.8.1
org.apache.commons:commons-math3 3.5
org.apache.httpcomponents:httpclient 4.3.6
org.apache.httpcomponents:httpclient 4.5.6
org.apache.httpcomponents:httpclient 4.5.9
org.apache.httpcomponents:httpcore 4.3.3
org.apache.httpcomponents:httpcore 4.4.10
org.apache.httpcomponents:httpcore 4.4.11
org.apache.httpcomponents:httpmime 4.3
org.apache.logging.log4j:log4j-api 2.11.0
org.apache.logging.log4j:log4j-api 2.5
org.apache.logging.log4j:log4j-core 2.11.0
org.apache.logging.log4j:log4j-core 2.5
org.apache.maven.wagon:wagon-file 3.0.0
org.apache.maven.wagon:wagon-http-shared 3.0.0
org.apache.maven.wagon:wagon-http 3.0.0
org.apache.maven.wagon:wagon-provider-api 3.0.0
org.apache.maven:maven-aether-provider 3.0.4
org.apache.maven:maven-artifact 3.0.4
org.apache.maven:maven-compat 3.0.4
org.apache.maven:maven-core 3.0.4
org.apache.maven:maven-model-builder 3.0.4
org.apache.maven:maven-model 3.0.4
org.apache.maven:maven-plugin-api 3.0.4
org.apache.maven:maven-repository-metadata 3.0.4
org.apache.maven:maven-settings-builder 3.0.4
org.apache.maven:maven-settings 3.0.4
org.apache.tools.ant.Main:ant-bootstrap *
org.apache.velocity:velocity-engine-core 2.1
org.apache.xbean:xbean-reflect 3.7
org.apache.xerces.impl.Version:xercesImpl 2.12.0
org.apache.xerces.impl.Version:xercesImpl 2.9.1
org.apache.xml.resolver.Catalog:xml-resolver 1.2
org.apache.xmlcommons.Version:xml-apis 1.3.04
org.apache.xmlcommons.Version:xml-apis 1.4.01
org.apache:ivy 2.3.0
org.apiguardian.api:apiguardian-api 1.0.0
org.bouncycastle:bcpg-jdk15on 1.61
org.bouncycastle:bcpkix-jdk15on 1.61
org.bouncycastle:bcprov-jdk15on 1.61
org.codehaus.groovy.modules.http-builder:http-builder 0.7.1
org.codehaus.mojo:animal-sniffer-annotations 1.18
org.codehaus.plexus:plexus-classworlds 2.5.1
org.codehaus.plexus:plexus-component-annotations 1.5.5
org.codehaus.plexus:plexus-container-default 1.7.1
org.codehaus.plexus:plexus-interpolation 1.14
org.codehaus.plexus:plexus-utils 3.0.24
org.codehaus.plexus:plexus-utils 3.1.0
org.daisy.libs:jing 20120724.0.0
org.debian.security.UpdateCertificates:ca-certificates-java *
org.eclipse.jgit:org.eclipse.jgit 5.0.3.201809091024-r
org.eclipse.jgit:org.eclipse.jgit 5.5.0.201909110433-r
org.freemarker.freemarker:freemarker 2.3.23
org.fusesource.hawtjni:hawtjni-runtime 1.16
org.fusesource.jansi:jansi-freebsd32 1.8
org.fusesource.jansi:jansi-freebsd64 1.8
org.fusesource.jansi:jansi-linux32 1.8
org.fusesource.jansi:jansi-linux64 1.8
org.fusesource.jansi:jansi-native 1.8
org.fusesource.jansi:jansi-osx 1.8
org.fusesource.jansi:jansi-windows32 1.8
org.fusesource.jansi:jansi-windows64 1.8
org.fusesource.jansi:jansi 1.17.1
org.glassfish.jaxb:jaxb-runtime 2.3.1
org.gradle.launcher.GradleMain:gradle-launcher 5.6
org.islandoftex.texplate:texplate 1.0.2
org.jdom2:jdom2 2.0.6
org.jetbrains:annotations 13.0
org.junit.platform.commons:junit-platform-commons 1.3.1
org.junit.platform.engine:junit-platform-engine 1.3.1
org.junit.platform.launcher:junit-platform-launcher 1.3.1
org.mozilla.javascript.tools.shell.Main:rhino 1.7.10
org.mvel:mvel2 2.2.8.Final
org.objectweb.asm.commons:asm-commons 7.0-beta
org.objectweb.asm.commons:asm-commons 7.1
org.objectweb.asm.tree.analysis:asm-analysis 7.0-beta
org.objectweb.asm.tree.analysis:asm-analysis 7.1
org.objectweb.asm.tree:asm-tree 7.0-beta
org.objectweb.asm.tree:asm-tree 7.1
org.objectweb.asm.util:asm-util 7.1
org.objectweb.asm:asm 7.0-beta
org.objectweb.asm:asm 7.1
org.objenesis:objenesis 2.6
org.opentest4j:opentest4j 1.1.1
org.simpleframework:simple-xml 2.7.1
org.simpleframework:simple 4.1.21
org.slf4j:jcl-over-slf4j 1.7.25
org.slf4j:jul-to-slf4j 1.7.25
org.slf4j:log4j-over-slf4j 1.7.25
org.slf4j:slf4j-api 1.7.12
org.slf4j:slf4j-api 1.7.2
org.slf4j:slf4j-api 1.7.25
org.slf4j:slf4j-api 1.7.30
org.slf4j:slf4j-api 1.7.7
org.slf4j:slf4j-simple 1.7.12
org.slf4j:slf4j-simple 1.7.30
org.sonatype.aether:aether-api 1.13.1
org.sonatype.aether:aether-connector-wagon 1.13.1
org.sonatype.aether:aether-impl 1.13.1
org.sonatype.aether:aether-spi 1.13.1
org.sonatype.aether:aether-util 1.13.1
org.sonatype.plexus:plexus-cipher 1.7
org.sonatype.plexus:plexus-sec-dispatcher 1.3
org.sonatype.pmaven:pmaven-common 0.8-SNAPSHOT
org.sonatype.pmaven:pmaven-groovy 0.8-SNAPSHOT
org.testng:testng 6.3.1
org.threeten:threetenbp 1.3.3
org.tukaani.xz:xz 1.5
org.vafer:jdependency 2.1.1
org.xerial.snappy.SnappyBundleActivator:snappy-java 1.1.4
org.yaml:snakeyaml 1.17
picard:picard 2.21.6-SNAPSHOT
picard:picard 2.21.6-SNAPSHOT-all
shadow:shadow 5.1.0
software.amazon.ion:ion-java 1.0.2
trove4j:trove4j 1.0.20181211

Cython 0.29.24
PyYAML 6.0
appdirs 1.4.4
biopython 1.79
certifi 2021.10.8
charset-normalizer 2.0.7
click 8.0.3
coloredlogs 15.0.1
cruzdb 0.5.6
cyvcf2 0.30.11
datacache 1.1.5
gtfparse 1.2.1
humanfriendly 10.0
idna 3.3
intervaltree-bio 1.0.1
intervaltree 3.1.0
joblib 1.1.0
memoized-property 1.0.3
mock 4.0.3
natsort 7.1.1
ncls 0.0.63
numpy 1.21.3
pandas 1.3.4
patsy 0.5.2
pip 20.0.2
progressbar33 2.4
pybedtools 0.8.2
pyensembl 1.9.4
pyfaidx 0.6.2
pyranges 0.0.112
pyrle 0.0.33
pysam 0.17.0
python-dateutil 2.8.2
pytz 2021.3
requests 2.26.0
scikit-learn 1.0
scipy 1.7.1
serializable 0.2.1
setuptools 45.2.0
simplejson 3.17.5
six 1.16.0
sorted-nearest 0.0.33
sortedcontainers 2.4.0
statsmodels 0.13.0
tabulate 0.8.9
threadpoolctl 3.0.0
tinytimer 0.0.0
typechecks 0.1.0
urllib3 1.26.7
wheel 0.34.2

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Docker

dhspence/docker-genomic-analysis-lite : 102321

Dependencies