Ecosyste.ms: Docker
An open API service providing dependency metadata for docker images.
dhspence/docker-amplicon-readcount : latest
GATK plus custom annotation script
Debian GNU/Linux 8 (jessie)
Latest release: about 7 years ago - 3,595 downloads - 716 dependencies
JSONDependencies
- debian/acl 2.2.52-2
- debian/adduser 3.113 nmu3
- debian/apt 1.0.9.8.4
- debian/base-files 8 deb8u7
- debian/base-passwd 3.5.37
- debian/bash 4.3-11 deb8u1
- debian/bind9-host 1:9.9.5.dfsg-9 deb8u13
- debian/bsdutils 1:2.25.2-6
- debian/bzip2 1.0.6-7 b3
- debian/bzr 2.6.0 bzr6595-6
- debian/ca-certificates-java 20140324
- debian/ca-certificates 20141019 deb8u2
- debian/coreutils 8.23-4
- debian/cracklib-runtime 2.9.2-1
- debian/curl 7.38.0-4 deb8u5
- debian/dash 0.5.7-4 b1
- debian/dbus-x11 1.8.22-0 deb8u1
- debian/dbus 1.8.22-0 deb8u1
- debian/debconf-i18n 1.5.56
- debian/debconf 1.5.56
- debian/debian-archive-keyring 2014.3
- debian/debianutils 4.4 b1
- debian/diffutils 1:3.3-1 b1
- debian/dmsetup 2:1.02.90-2.2 deb8u1
- debian/dpkg 1.17.27
- debian/e2fslibs 1.42.12-2 b1
- debian/e2fsprogs 1.42.12-2 b1
- debian/file 1:5.22 15-2 deb8u3
- debian/findutils 4.4.2-9 b1
- debian/fontconfig-config 2.11.0-6.3 deb8u1
- debian/fontconfig 2.11.0-6.3 deb8u1
- debian/fonts-dejavu-core 2.34-1
- debian/fonts-dejavu-extra 2.34-1
- debian/gcc-4.8-base 4.8.4-1
- debian/gcc-4.9-base 4.9.2-10
- debian/gconf-service 3.2.6-3
- debian/gconf2-common 3.2.6-3
- debian/gconf2 3.2.6-3
- debian/geoip-database 20150317-1
- debian/git-man 1:2.1.4-2.1 deb8u2
- debian/git 1:2.1.4-2.1 deb8u2
- debian/gnome-mime-data 2.18.0-1
- debian/gnupg 1.4.18-7 deb8u3
- debian/gpgv 1.4.18-7 deb8u3
- debian/grep 2.20-4.1
- debian/gzip 1.6-4
- debian/hicolor-icon-theme 0.13-1
- debian/hostname 3.15
- debian/inetutils-ping 2:1.9.2.39.3a460-3
- debian/init-system-helpers 1.22
- debian/init 1.22
- debian/initscripts 2.88dsf-59
- debian/insserv 1.14.0-5
- debian/iproute2 3.16.0-2
- debian/java-common 0.52
- debian/ldap-utils 2.4.40 dfsg-1 deb8u3
- debian/libacl1 2.2.52-2
- debian/libapr1 1.5.1-3
- debian/libaprutil1 1.5.4-1
- debian/libapt-pkg4.12 1.0.9.8.4
- debian/libasound2-data 1.0.28-1
- debian/libasound2 1.0.28-1
- debian/libasyncns0 0.8-5
- debian/libatk-wrapper-java-jni 0.30.5-1
- debian/libatk-wrapper-java 0.30.5-1
- debian/libatk1.0-0 2.14.0-1
- debian/libatk1.0-data 2.14.0-1
- debian/libattr1 1:2.4.47-2
- debian/libaudit-common 1:2.4-1
- debian/libaudit1 1:2.4-1 b1
- debian/libavahi-client3 0.6.31-5
- debian/libavahi-common-data 0.6.31-5
- debian/libavahi-common3 0.6.31-5
- debian/libavahi-glib1 0.6.31-5
- debian/libbasicobjects0 0.4.0-1
- debian/libbind9-90 1:9.9.5.dfsg-9 deb8u13
- debian/libblkid1 2.25.2-6
- debian/libbonobo2-0 2.32.1-3
- debian/libbonobo2-common 2.32.1-3
- debian/libbsd0 0.7.0-2
- debian/libbz2-1.0 1.0.6-7 b3
- debian/libc-ares2 1.10.0-2 deb8u2
- debian/libc-bin 2.19-18 deb8u7
- debian/libc6 2.19-18 deb8u7
- debian/libcairo2 1.14.0-2.1 deb8u2
- debian/libcanberra0 0.30-2.1
- debian/libcap-ng0 0.7.4-2
- debian/libcap2-bin 1:2.24-8
- debian/libcap2 1:2.24-8
- debian/libcollection4 0.4.0-1
- debian/libcomerr2 1.42.12-2 b1
- debian/libcrack2 2.9.2-1
- debian/libcryptsetup4 2:1.6.6-5
- debian/libcups2 1.7.5-11 deb8u1
- debian/libcurl3-gnutls 7.38.0-4 deb8u5
- debian/libcurl3 7.38.0-4 deb8u5
- debian/libdatrie1 0.2.8-1
- debian/libdb5.3 5.3.28-9
- debian/libdbus-1-3 1.8.22-0 deb8u1
- debian/libdbus-glib-1-2 0.102-1
- debian/libdebconfclient0 0.192
- debian/libdevmapper1.02.1 2:1.02.90-2.2 deb8u1
- debian/libdhash1 0.4.0-1
- debian/libdns100 1:9.9.5.dfsg-9 deb8u13
- debian/libdrm-intel1 2.4.58-2
- debian/libdrm-nouveau2 2.4.58-2
- debian/libdrm-radeon1 2.4.58-2
- debian/libdrm2 2.4.58-2
- debian/libedit2 3.1-20140620-2
- debian/libelf1 0.159-4.2
- debian/liberror-perl 0.17-1.1
- debian/libexpat1 2.1.0-6 deb8u3
- debian/libffi6 3.1-2 b2
- debian/libflac8 1.3.0-3
- debian/libfontconfig1 2.11.0-6.3 deb8u1
- debian/libfreetype6 2.5.2-3 deb8u1
- debian/libgcc1 1:4.9.2-10
- debian/libgconf-2-4 3.2.6-3
- debian/libgconf2-4 3.2.6-3
- debian/libgcrypt20 1.6.3-2 deb8u2
- debian/libgdbm3 1.8.3-13.1
- debian/libgdk-pixbuf2.0-0 2.31.1-2 deb8u5
- debian/libgdk-pixbuf2.0-common 2.31.1-2 deb8u5
- debian/libgeoip1 1.6.2-4
- debian/libgif4 4.1.6-11 deb8u1
- debian/libgl1-mesa-dri 10.3.2-1 deb8u1
- debian/libgl1-mesa-glx 10.3.2-1 deb8u1
- debian/libglapi-mesa 10.3.2-1 deb8u1
- debian/libglib2.0-0 2.42.1-1 b1
- debian/libglib2.0-data 2.42.1-1
- debian/libgmp10 2:6.0.0 dfsg-6
- debian/libgnome-2-0 2.32.1-5
- debian/libgnome2-0 2.32.1-5
- debian/libgnome2-bin 2.32.1-5
- debian/libgnome2-common 2.32.1-5
- debian/libgnomevfs2-0 1:2.24.4-6 b1
- debian/libgnomevfs2-common 1:2.24.4-6
- debian/libgnomevfs2-extra 1:2.24.4-6 b1
- debian/libgnutls-deb0-28 3.3.8-6 deb8u4
- debian/libgpg-error0 1.17-3
- debian/libgraphite2-3 1.3.6-1~deb8u1
- debian/libgssapi-krb5-2 1.12.1 dfsg-19 deb8u2
- debian/libgtk2.0-0 2.24.25-3 deb8u1
- debian/libgtk2.0-bin 2.24.25-3 deb8u1
- debian/libgtk2.0-common 2.24.25-3 deb8u1
- debian/libharfbuzz0b 0.9.35-2
- debian/libhogweed2 2.7.1-5 deb8u2
- debian/libice-dev 2:1.0.9-1 b1
- debian/libice6 2:1.0.9-1 b1
- debian/libicu52 52.1-8 deb8u4
- debian/libidn11 1.29-1 deb8u2
- debian/libini-config5 0.4.0-1
- debian/libipa-hbac0 1.11.7-3
- debian/libisc95 1:9.9.5.dfsg-9 deb8u13
- debian/libisccc90 1:9.9.5.dfsg-9 deb8u13
- debian/libisccfg90 1:9.9.5.dfsg-9 deb8u13
- debian/libjasper1 1.900.1-debian1-2.4 deb8u1
- debian/libjbig0 2.1-3.1
- debian/libjpeg62-turbo 1:1.3.1-12
- debian/libjs-excanvas 0.r3-3
- debian/libjson-c2 0.11-4
- debian/libk5crypto3 1.12.1 dfsg-19 deb8u2
- debian/libkeyutils1 1.5.9-5 b1
- debian/libkmod2 18-3
- debian/libkrb5-3 1.12.1 dfsg-19 deb8u2
- debian/libkrb5support0 1.12.1 dfsg-19 deb8u2
- debian/liblcms2-2 2.6-3 b3
- debian/libldap-2.4-2 2.4.40 dfsg-1 deb8u3
- debian/libldb1 2:1.1.20-0 deb8u1
- debian/libllvm3.5 1:3.5-10
- debian/liblocale-gettext-perl 1.05-8 b1
- debian/libltdl7 2.4.2-1.11 b1
- debian/liblwres90 1:9.9.5.dfsg-9 deb8u13
- debian/liblzma5 5.1.1alpha 20120614-2 b3
- debian/libmagic1 1:5.22 15-2 deb8u3
- debian/libmount1 2.25.2-6
- debian/libncurses5 5.9 20140913-1 b1
- debian/libncursesw5 5.9 20140913-1 b1
- debian/libnettle4 2.7.1-5 deb8u2
- debian/libnl-3-200 3.2.24-2
- debian/libnl-route-3-200 3.2.24-2
- debian/libnspr4 2:4.12-1 debu8u1
- debian/libnss-sss 1.11.7-3
- debian/libnss3 2:3.26-1 debu8u1
- debian/libntdb1 1.0-5
- debian/libogg0 1.3.2-1
- debian/liborbit-2-0 1:2.14.19-0.3
- debian/libp11-kit0 0.20.7-1
- debian/libpam-modules-bin 1.1.8-3.1 deb8u2
- debian/libpam-modules 1.1.8-3.1 deb8u2
- debian/libpam-pwquality 1.2.3-1
- debian/libpam-runtime 1.1.8-3.1 deb8u2
- debian/libpam-sss 1.11.7-3
- debian/libpam0g 1.1.8-3.1 deb8u2
- debian/libpango-1.0-0 1.36.8-3
- debian/libpangocairo-1.0-0 1.36.8-3
- debian/libpangoft2-1.0-0 1.36.8-3
- debian/libpath-utils1 0.4.0-1
- debian/libpciaccess0 0.13.2-3 b1
- debian/libpcre3 2:8.35-3.3 deb8u4
- debian/libpcsclite1 1.8.13-1 deb8u1
- debian/libpixman-1-0 0.32.6-3
- debian/libpng12-0 1.2.50-2 deb8u3
- debian/libpopt0 1.16-10
- debian/libprocps3 2:3.3.9-9
- debian/libpsl0 0.5.1-1
- debian/libpthread-stubs0-dev 0.3-4
- debian/libpulse0 5.0-13
- debian/libpwquality-common 1.2.3-1
- debian/libpwquality1 1.2.3-1
- debian/libpython-stdlib 2.7.9-1
- debian/libpython2.7-minimal 2.7.9-2 deb8u1
- debian/libpython2.7-stdlib 2.7.9-2 deb8u1
- debian/libpython2.7 2.7.9-2 deb8u1
- debian/libreadline6 6.3-8 b3
- debian/libref-array1 0.4.0-1
- debian/librtmp1 2.4 20150115.gita107cef-1
- debian/libsasl2-2 2.1.26.dfsg1-13 deb8u1
- debian/libsasl2-modules-db 2.1.26.dfsg1-13 deb8u1
- debian/libsasl2-modules-gssapi-mit 2.1.26.dfsg1-13 deb8u1
- debian/libsasl2-modules 2.1.26.dfsg1-13 deb8u1
- debian/libselinux1 2.3-2
- debian/libsemanage-common 2.3-1
- debian/libsemanage1 2.3-1 b1
- debian/libsepol1 2.3-2
- debian/libserf-1-1 1.3.8-1
- debian/libslang2 2.3.0-2
- debian/libsm-dev 2:1.2.2-1 b1
- debian/libsm6 2:1.2.2-1 b1
- debian/libsmartcols1 2.25.2-6
- debian/libsndfile1 1.0.25-9.1 deb8u1
- debian/libsqlite3-0 3.8.7.1-1 deb8u2
- debian/libss2 1.42.12-2 b1
- debian/libssh2-1 1.4.3-4.1 deb8u1
- debian/libssl1.0.0 1.0.1t-1 deb8u5
- debian/libsss-idmap0 1.11.7-3
- debian/libsss-sudo 1.11.7-3
- debian/libstdc 6 4.9.2-10
- debian/libsvn1 1.8.10-6 deb8u4
- debian/libsystemd0 215-17 deb8u6
- debian/libtalloc2 2.1.2-0 deb8u1
- debian/libtasn1-6 4.2-3 deb8u2
- debian/libtdb1 1.3.6-0 deb8u1
- debian/libtevent0 0.9.28-0 deb8u1
- debian/libtext-charwidth-perl 0.04-7 b3
- debian/libtext-iconv-perl 1.7-5 b2
- debian/libtext-wrapi18n-perl 0.06-7
- debian/libthai-data 0.1.21-1
- debian/libthai0 0.1.21-1
- debian/libtiff5 4.0.3-12.3 deb8u2
- debian/libtinfo5 5.9 20140913-1 b1
- debian/libtxc-dxtn-s2tc0 0~git20131104-1.1
- debian/libudev1 215-17 deb8u6
- debian/libusb-0.1-4 2:0.1.12-25
- debian/libustr-1.0-1 1.0.4-3 b2
- debian/libuuid1 2.25.2-6
- debian/libvorbis0a 1.3.4-2
- debian/libvorbisenc2 1.3.4-2
- debian/libvorbisfile3 1.3.4-2
- debian/libwbclient0 2:4.2.14 dfsg-0 deb8u7 b1
- debian/libwrap0 7.6.q-25
- debian/libx11-6 2:1.6.2-3
- debian/libx11-data 2:1.6.2-3
- debian/libx11-dev 2:1.6.2-3
- debian/libx11-doc 2:1.6.2-3
- debian/libx11-xcb1 2:1.6.2-3
- debian/libxau-dev 1:1.0.8-1
- debian/libxau6 1:1.0.8-1
- debian/libxcb-dri2-0 1.10-3 b1
- debian/libxcb-dri3-0 1.10-3 b1
- debian/libxcb-glx0 1.10-3 b1
- debian/libxcb-present0 1.10-3 b1
- debian/libxcb-render0 1.10-3 b1
- debian/libxcb-shm0 1.10-3 b1
- debian/libxcb-sync1 1.10-3 b1
- debian/libxcb1-dev 1.10-3 b1
- debian/libxcb1 1.10-3 b1
- debian/libxcomposite1 1:0.4.4-1
- debian/libxcursor1 1:1.1.14-1 b1
- debian/libxdamage1 1:1.1.4-2 b1
- debian/libxdmcp-dev 1:1.1.1-1 b1
- debian/libxdmcp6 1:1.1.1-1 b1
- debian/libxext6 2:1.3.3-1
- debian/libxfixes3 1:5.0.1-2 b2
- debian/libxi6 2:1.7.4-1 b2
- debian/libxinerama1 2:1.1.3-1 b1
- debian/libxml2 2.9.1 dfsg1-5 deb8u4
- debian/libxrandr2 2:1.4.2-1 b1
- debian/libxrender1 1:0.9.8-1 b1
- debian/libxshmfence1 1.1-4
- debian/libxt-dev 1:1.1.4-1 b1
- debian/libxt6 1:1.1.4-1 b1
- debian/libxtst6 2:1.2.2-1 b1
- debian/libxxf86vm1 1:1.1.3-1 b1
- debian/login 1:4.2-3 deb8u1
- debian/lsb-base 4.1 Debian13 nmu1
- debian/mawk 1.3.3-17
- debian/mercurial-common 3.1.2-2 deb8u3
- debian/mercurial 3.1.2-2 deb8u3
- debian/mime-support 3.58
- debian/mount 2.25.2-6
- debian/multiarch-support 2.19-18 deb8u7
- debian/ncurses-base 5.9 20140913-1
- debian/ncurses-bin 5.9 20140913-1 b1
- debian/netbase 5.3
- debian/openjdk-8-jdk-headless 8u111-b14-2~bpo8 1
- debian/openjdk-8-jdk 8u111-b14-2~bpo8 1
- debian/openjdk-8-jre-headless 8u111-b14-2~bpo8 1
- debian/openjdk-8-jre 8u111-b14-2~bpo8 1
- debian/openssh-client 1:6.7p1-5 deb8u3
- debian/openssl 1.0.1t-1 deb8u5
- debian/passwd 1:4.2-3 deb8u1
- debian/perl-base 5.20.2-3 deb8u6
- debian/perl-modules 5.20.2-3 deb8u6
- debian/perl 5.20.2-3 deb8u6
- debian/procps 2:3.3.9-9
- debian/psmisc 22.21-2
- debian/python-bzrlib 2.6.0 bzr6595-6
- debian/python-configobj 5.0.6-1
- debian/python-minimal 2.7.9-1
- debian/python-six 1.8.0-1
- debian/python-sss 1.11.7-3
- debian/python-talloc 2.1.2-0 deb8u1
- debian/python2.7-minimal 2.7.9-2 deb8u1
- debian/python2.7 2.7.9-2 deb8u1
- debian/python 2.7.9-1
- debian/readline-common 6.3-8
- debian/samba-libs 2:4.2.14 dfsg-0 deb8u7 b1
- debian/sed 4.2.2-4 deb8u1
- debian/sensible-utils 0.0.9
- debian/sgml-base 1.26 nmu4
- debian/shared-mime-info 1.3-1
- debian/sssd-ad-common 1.11.7-3
- debian/sssd-ad 1.11.7-3
- debian/sssd-common 1.11.7-3
- debian/sssd-ipa 1.11.7-3
- debian/sssd-krb5-common 1.11.7-3
- debian/sssd-krb5 1.11.7-3
- debian/sssd-ldap 1.11.7-3
- debian/sssd-proxy 1.11.7-3
- debian/sssd 1.11.7-3
- debian/startpar 0.59-3
- debian/subversion 1.8.10-6 deb8u4
- debian/systemd-sysv 215-17 deb8u6
- debian/systemd 215-17 deb8u6
- debian/sysv-rc 2.88dsf-59
- debian/sysvinit-utils 2.88dsf-59
- debian/tar 1.27.1-2 deb8u1
- debian/tcpd 7.6.q-25
- debian/tzdata 2016j-0 deb8u1
- debian/ucf 3.0030
- debian/udev 215-17 deb8u6
- debian/unzip 6.0-16 deb8u2
- debian/util-linux 2.25.2-6
- debian/wamerican 7.1-1
- debian/wget 1.16-1 deb8u2
- debian/x11-common 1:7.7 7
- debian/x11proto-core-dev 7.0.26-1
- debian/x11proto-input-dev 2.3.1-1
- debian/x11proto-kb-dev 1.0.6-2
- debian/xdg-user-dirs 0.15-2
- debian/xml-core 0.13 nmu2
- debian/xorg-sgml-doctools 1:1.11-1
- debian/xtrans-dev 1.3.4-1
- debian/xz-utils 5.1.1alpha 20120614-2 b3
- debian/zlib1g 1:1.2.8.dfsg-2 b1
- US_export_policy:US_export_policy *
- antlr:antlr 2.7.7
- aopalliance:aopalliance 1.0
- asm-analysis:asm-analysis 3.3.1
- asm-analysis:asm-analysis 4.0
- asm-commons:asm-commons 3.3.1
- asm-commons:asm-commons 4.0
- asm-tree:asm-tree 3.3.1
- asm-tree:asm-tree 4.0
- asm-util:asm-util 3.3.1
- asm-util:asm-util 4.0
- asm-xml:asm-xml 3.3.1
- asm:asm 3.3.1
- asm:asm 4.0
- backport-util-concurrent:backport-util-concurrent 3.1
- bsh:bsh 2.0b4
- charsets:charsets *
- cldrdata:cldrdata *
- cofoja:cofoja 1.2-20140817
- colt:colt 1.2.0
- com.beust:jcommander 1.27
- com.fasterxml.jackson.core:jackson-core 2.1.3
- com.github.broadinstitute:picard 2.4.1
- com.google.api-client:google-api-client-java6 1.19.0
- com.google.api-client:google-api-client 1.19.0
- com.google.apis:google-api-services-genomics v1beta2-rev9-1.19.0
- com.google.caliper:caliper 0.5-rc1
- com.google.cloud.genomics:gatk-tools-java 1.1
- com.google.cloud.genomics:google-genomics-utils v1beta2-0.19
- com.google.code.java-allocation-instrumenter:java-allocation-instrumenter 2.0
- com.google.code.sortpom:maven-sortpom-plugin 2.2
- com.google.code.sortpom:maven-sortpom-sorter 2.2
- com.google.collections:google-collections 1.0
- com.google.gson:gson 1.7.1
- com.google.gson:gson 2.2.2
- com.google.guava:guava 11.0.2
- com.google.guava:guava 18.0
- com.google.http-client:google-http-client-jackson2 1.19.0
- com.google.http-client:google-http-client 1.19.0
- com.google.inject:guice 3.0
- com.google.oauth-client:google-oauth-client-java6 1.19.0
- com.google.oauth-client:google-oauth-client-jetty 1.19.0
- com.google.oauth-client:google-oauth-client 1.19.0
- com.jamesmurty.utils:java-xmlbuilder 0.4
- com.lukegb.mojo:gitdescribe-maven-plugin 2.0
- com.pyx4j:maven-junction-plugin 1.0.3
- com.sun.jna:jna 3.2.7
- com.sun:activation 1.1
- com.sun:jce 1.8.0_111
- com.sun:mail 1.4
- com.sun:sunec 1.8.0_111
- com.sun:sunjce_provider 1.8.0_111
- com.sun:sunpkcs11 1.8.0_111
- com.thoughtworks.qdox:qdox 1.12.1
- commons-cli:commons-cli 1.2
- commons-codec:commons-codec 1.2
- commons-codec:commons-codec 1.3
- commons-codec:commons-codec 1.4
- commons-codec:commons-codec 1.6
- commons-collections:commons-collections 3.2
- commons-collections:commons-collections 3.2.1
- commons-io:commons-io 1.2
- commons-io:commons-io 1.4
- commons-io:commons-io 2.1
- commons-io:commons-io 2.2
- commons-lang:commons-lang 2.1
- commons-lang:commons-lang 2.4
- commons-lang:commons-lang 2.5
- commons-lang:commons-lang 2.6
- commons-logging:commons-logging 1.0.4
- commons-logging:commons-logging 1.1.1
- commons-validator:commons-validator 1.2.0
- concurrent:concurrent 1.3.4
- dnsns:dnsns *
- dt:dt *
- fastutil:fastutil 6.5.3
- freemarker:freemarker 2.3.18
- google-api-services-genomics-v1beta2-rev9:google-api-services-genomics-v1beta2-rev9 1.19.0
- google-genomics-utils-v1beta2:google-genomics-utils-v1beta2 0.19
- gov.nist.math.jama:gov.nist.math.jama 1.1.1
- htsjdk:htsjdk 2.4.1
- icedtea-sound:icedtea-sound *
- jaccess:jaccess *
- jama:jama 1.0.2
- java-atk-wrapper:java-atk-wrapper *
- javax.mail:mail 1.4.4
- jconsole:jconsole *
- jets3t:jets3t 0.8.1
- jsr305:jsr305 1.3.9
- jsr305:jsr305 2.0.1
- jsse:jsse 1.8.0_111
- junit:junit 3.8.1
- junit:junit 3.8.2
- junit:junit 4.10
- local_policy:local_policy *
- localedata:localedata *
- log4j:log4j 1.2.12
- log4j:log4j 1.2.14
- log4j:log4j 1.2.15
- management-agent:management-agent *
- nashorn:nashorn 1.8.0_111-8u111-b14-2~bpo8 1-b14
- ngs-java:ngs-java 1.2.2
- org.apache.ant:ant 1.8.1
- org.apache.commons.*:commons-cli 1.0
- org.apache.commons.beanutils:commons-beanutils 1.7.0
- org.apache.commons.digester:commons-digester 1.6
- org.apache.commons:commons-compress 1.4.1
- org.apache.commons:commons-exec 1.1
- org.apache.commons:commons-jexl 2.1.1
- org.apache.commons:commons-lang3 3.1
- org.apache.commons:commons-math3 3.5
- org.apache.commons:commons-math 2.2
- org.apache.httpcomponents:httpclient 4.1.1
- org.apache.httpcomponents:httpclient 4.2.3
- org.apache.httpcomponents:httpcore 4.1
- org.apache.httpcomponents:httpcore 4.2.2
- org.apache.maven.doxia:doxia-core 1.0
- org.apache.maven.doxia:doxia-core 1.1.2
- org.apache.maven.doxia:doxia-decoration-model 1.0
- org.apache.maven.doxia:doxia-decoration-model 1.1.4
- org.apache.maven.doxia:doxia-logging-api 1.1
- org.apache.maven.doxia:doxia-logging-api 1.1.4
- org.apache.maven.doxia:doxia-module-apt 1.0
- org.apache.maven.doxia:doxia-module-fml 1.0
- org.apache.maven.doxia:doxia-module-fml 1.1.4
- org.apache.maven.doxia:doxia-module-xdoc 1.0
- org.apache.maven.doxia:doxia-module-xhtml 1.0
- org.apache.maven.doxia:doxia-module-xhtml 1.1.4
- org.apache.maven.doxia:doxia-sink-api 1.0
- org.apache.maven.doxia:doxia-sink-api 1.0-alpha-7
- org.apache.maven.doxia:doxia-sink-api 1.1
- org.apache.maven.doxia:doxia-sink-api 1.1.4
- org.apache.maven.doxia:doxia-site-renderer 1.0
- org.apache.maven.doxia:doxia-site-renderer 1.1.4
- org.apache.maven.plugin-tools:maven-plugin-annotations 3.2
- org.apache.maven.plugins:maven-assembly-plugin 2.4
- org.apache.maven.plugins:maven-compiler-plugin 3.1
- org.apache.maven.plugins:maven-dependency-plugin 2.8
- org.apache.maven.plugins:maven-failsafe-plugin 2.16
- org.apache.maven.plugins:maven-install-plugin 2.5
- org.apache.maven.plugins:maven-invoker-plugin 1.8
- org.apache.maven.plugins:maven-jar-plugin 2.4
- org.apache.maven.plugins:maven-javadoc-plugin 2.9.1
- org.apache.maven.plugins:maven-resources-plugin 2.6
- org.apache.maven.plugins:maven-shade-plugin 2.4.3
- org.apache.maven.plugins:maven-surefire-plugin 2.16
- org.apache.maven.reporting:maven-reporting-api 2.0.6
- org.apache.maven.reporting:maven-reporting-api 2.0.9
- org.apache.maven.reporting:maven-reporting-api 2.2.1
- org.apache.maven.reporting:maven-reporting-api 3.0
- org.apache.maven.reporting:maven-reporting-impl 2.0.5
- org.apache.maven.reporting:maven-reporting-impl 2.1
- org.apache.maven.scm:maven-scm-api 1.2
- org.apache.maven.shared:file-management 1.1
- org.apache.maven.shared:file-management 1.2.1
- org.apache.maven.shared:maven-common-artifact-filters 1.3
- org.apache.maven.shared:maven-common-artifact-filters 1.4
- org.apache.maven.shared:maven-dependency-analyzer 1.4
- org.apache.maven.shared:maven-dependency-tree 2.1
- org.apache.maven.shared:maven-dependency-tree 2.2
- org.apache.maven.shared:maven-doxia-tools 1.0.2
- org.apache.maven.shared:maven-filtering 1.1
- org.apache.maven.shared:maven-invoker 2.0.11
- org.apache.maven.shared:maven-invoker 2.0.9
- org.apache.maven.shared:maven-invoker 2.1.1
- org.apache.maven.shared:maven-repository-builder 1.0-alpha-2
- org.apache.maven.shared:maven-script-interpreter 1.1
- org.apache.maven.shared:maven-shared-incremental 1.1
- org.apache.maven.shared:maven-shared-io 1.1
- org.apache.maven.shared:maven-shared-utils 0.1
- org.apache.maven.shared:maven-shared-utils 0.4
- org.apache.maven.surefire:maven-surefire-common 2.16
- org.apache.maven.surefire:surefire-api 2.16
- org.apache.maven.surefire:surefire-booter 2.16
- org.apache.maven.wagon:wagon-provider-api 1.0-alpha-6
- org.apache.maven.wagon:wagon-provider-api 1.0-beta-6
- org.apache.maven:maven-aether-provider 3.0
- org.apache.maven:maven-archiver 2.5
- org.apache.maven:maven-artifact-manager 2.0.6
- org.apache.maven:maven-artifact-manager 2.0.9
- org.apache.maven:maven-artifact-manager 2.2.1
- org.apache.maven:maven-artifact 2.0
- org.apache.maven:maven-artifact 2.0.6
- org.apache.maven:maven-artifact 2.0.9
- org.apache.maven:maven-artifact 2.2.1
- org.apache.maven:maven-artifact 3.0
- org.apache.maven:maven-artifact 3.0.4
- org.apache.maven:maven-compat 3.0
- org.apache.maven:maven-core 2.0.6
- org.apache.maven:maven-core 2.0.9
- org.apache.maven:maven-core 2.2.1
- org.apache.maven:maven-core 3.0
- org.apache.maven:maven-error-diagnostics 2.0.6
- org.apache.maven:maven-error-diagnostics 2.0.9
- org.apache.maven:maven-error-diagnostics 2.2.1
- org.apache.maven:maven-model-builder 3.0
- org.apache.maven:maven-model 2.0.6
- org.apache.maven:maven-model 2.0.9
- org.apache.maven:maven-model 2.2.1
- org.apache.maven:maven-model 3.0
- org.apache.maven:maven-model 3.0.4
- org.apache.maven:maven-monitor 2.0.6
- org.apache.maven:maven-monitor 2.0.9
- org.apache.maven:maven-monitor 2.2.1
- org.apache.maven:maven-plugin-api 2.0
- org.apache.maven:maven-plugin-api 2.0.6
- org.apache.maven:maven-plugin-api 2.0.9
- org.apache.maven:maven-plugin-api 2.2.1
- org.apache.maven:maven-plugin-api 3.0
- org.apache.maven:maven-plugin-api 3.0.4
- org.apache.maven:maven-plugin-descriptor 2.0.6
- org.apache.maven:maven-plugin-descriptor 2.0.9
- org.apache.maven:maven-plugin-descriptor 2.2.1
- org.apache.maven:maven-plugin-parameter-documenter 2.0.6
- org.apache.maven:maven-plugin-parameter-documenter 2.0.9
- org.apache.maven:maven-plugin-parameter-documenter 2.2.1
- org.apache.maven:maven-plugin-registry 2.0.6
- org.apache.maven:maven-plugin-registry 2.0.9
- org.apache.maven:maven-plugin-registry 2.2.1
- org.apache.maven:maven-profile 2.0.6
- org.apache.maven:maven-profile 2.0.9
- org.apache.maven:maven-profile 2.2.1
- org.apache.maven:maven-project 2.0.6
- org.apache.maven:maven-project 2.0.9
- org.apache.maven:maven-project 2.2.1
- org.apache.maven:maven-repository-metadata 2.0.6
- org.apache.maven:maven-repository-metadata 2.0.9
- org.apache.maven:maven-repository-metadata 2.2.1
- org.apache.maven:maven-repository-metadata 3.0
- org.apache.maven:maven-settings-builder 3.0
- org.apache.maven:maven-settings 2.0.6
- org.apache.maven:maven-settings 2.0.9
- org.apache.maven:maven-settings 2.2.1
- org.apache.maven:maven-settings 3.0
- org.apache.maven:maven-toolchain 1.0
- org.apache.maven:maven-toolchain 2.0.9
- org.apache.maven:maven-toolchain 2.2.1
- org.apache.oro:oro 2.0.8
- org.apache.velocity:velocity 1.4
- org.apache.velocity:velocity 1.5
- org.apache.xbean:xbean-reflect 3.4
- org.apache.xerces.impl.Version:xercesImpl 2.8.1
- org.apache.xmlcommons.Version:xml-apis 1.0.b2
- org.apache:commons-httpclient 3.1
- org.apache:commons-logging-api 1.1
- org.broadinstitute.gatk.engine.CommandLineGATK:GenomeAnalysisTK *
- org.broadinstitute.gatk:gatk-engine 3.6
- org.broadinstitute.gatk:gatk-package-distribution 3.6
- org.broadinstitute.gatk:gatk-tools-protected 3.6
- org.broadinstitute.gatk:gatk-tools-public 3.6
- org.broadinstitute.gatk:gatk-utils 3.6
- org.codehaus.classworlds:classworlds 1.1
- org.codehaus.classworlds:classworlds 1.1-alpha-2
- org.codehaus.groovy:groovy-all 2.0.1
- org.codehaus.groovy:groovy 2.0.1
- org.codehaus.mojo:build-helper-maven-plugin 1.8
- org.codehaus.mojo:exec-maven-plugin 1.2.1
- org.codehaus.plexus:plexus-archiver 2.1
- org.codehaus.plexus:plexus-archiver 2.1.2
- org.codehaus.plexus:plexus-archiver 2.2
- org.codehaus.plexus:plexus-archiver 2.3
- org.codehaus.plexus:plexus-classworlds 2.2.2
- org.codehaus.plexus:plexus-classworlds 2.2.3
- org.codehaus.plexus:plexus-classworlds 2.4
- org.codehaus.plexus:plexus-compiler-api 2.2
- org.codehaus.plexus:plexus-compiler-javac 2.2
- org.codehaus.plexus:plexus-compiler-manager 2.2
- org.codehaus.plexus:plexus-component-annotations 1.5.5
- org.codehaus.plexus:plexus-container-default 1.0-alpha-9
- org.codehaus.plexus:plexus-container-default 1.0-alpha-9-stable-1
- org.codehaus.plexus:plexus-container-default 1.5.5
- org.codehaus.plexus:plexus-i18n 1.0-beta-7
- org.codehaus.plexus:plexus-interactivity-api 1.0-alpha-4
- org.codehaus.plexus:plexus-interpolation 1.11
- org.codehaus.plexus:plexus-interpolation 1.13
- org.codehaus.plexus:plexus-interpolation 1.14
- org.codehaus.plexus:plexus-interpolation 1.15
- org.codehaus.plexus:plexus-interpolation 1.2
- org.codehaus.plexus:plexus-interpolation 1.3
- org.codehaus.plexus:plexus-io 2.0.2
- org.codehaus.plexus:plexus-io 2.0.4
- org.codehaus.plexus:plexus-io 2.0.6
- org.codehaus.plexus:plexus-utils 1.0.4
- org.codehaus.plexus:plexus-utils 1.4.1
- org.codehaus.plexus:plexus-utils 1.5.1
- org.codehaus.plexus:plexus-utils 1.5.8
- org.codehaus.plexus:plexus-utils 2.0.5
- org.codehaus.plexus:plexus-utils 2.0.6
- org.codehaus.plexus:plexus-utils 3.0
- org.codehaus.plexus:plexus-utils 3.0.15
- org.codehaus.plexus:plexus-utils 3.0.22
- org.codehaus.plexus:plexus-utils 3.0.5
- org.codehaus.plexus:plexus-utils 3.0.7
- org.codehaus.plexus:plexus-utils 3.0.8
- org.codehaus.plexus:plexus-utils 3.0.9
- org.codehaus.plexus:plexus-velocity 1.1.7
- org.debian.security.UpdateCertificates:ca-certificates-java *
- org.dom4j:dom4j 1.6.1
- org.eclipse.aether:aether-util 0.9.0.M2
- org.hamcrest:hamcrest-core 1.1
- org.javassist:javassist 3.16.1-GA
- org.jdom:jdom 1.1
- org.jdom:jdom 1.1.3
- org.jgrapht.demo.JGraphAdapterDemo:jgrapht 0.8.3
- org.mortbay.jetty:jetty-util 6.1.26
- org.mortbay.jetty:jetty 6.1.26
- org.objectweb.asm.all:asm-all 5.0.4
- org.objectweb.asm.analysis:asm-analysis 5.0.4
- org.objectweb.asm.commons:asm-commons 5.0.2
- org.objectweb.asm.tree:asm-tree 5.0.2
- org.objectweb.asm.util:asm-util 5.0.4
- org.objectweb.asm:asm 5.0.2
- org.reflections:reflections 0.9.9-RC1
- org.simpleframework:simple-xml 2.0.4
- org.slf4j:jcl-over-slf4j 1.5.6
- org.slf4j:slf4j-api 1.5.6
- org.slf4j:slf4j-api 1.6.1
- org.slf4j:slf4j-jdk14 1.5.6
- org.slf4j:slf4j-log4j12 1.7.5
- org.sonatype.aether:aether-api 1.7
- org.sonatype.aether:aether-impl 1.7
- org.sonatype.aether:aether-spi 1.7
- org.sonatype.aether:aether-util 1.7
- org.sonatype.plexus:plexus-build-api 0.0.4
- org.sonatype.plexus:plexus-cipher 1.4
- org.sonatype.plexus:plexus-sec-dispatcher 1.3
- org.sonatype.sisu.guava:sisu-guava 0.9.9
- org.sonatype.sisu.guice:sisu-guice 3.1.0-no_aop
- org.sonatype.sisu.sisu-guice-noaop:sisu-guice 2.1.7-noaop
- org.sonatype.sisu:sisu-inject-bean 1.4.2
- org.sonatype.sisu:sisu-inject-bean 2.3.0
- org.sonatype.sisu:sisu-inject-plexus 1.4.2
- org.sonatype.sisu:sisu-inject-plexus 2.3.0
- org.testng:testng 6.8
- org.tukaani.xz:xz 1.5
- org.uncommons:reportng 1.1.2
- org.vafer:jdependency 1.1
- org.xerial.snappy:snappy-java 1.0.3-rc3
- org.yaml:snakeyaml 1.6
- resources:resources 1.8.0_111
- rt:rt 1.8.0_111
- sa-jdi:sa-jdi *
- servlet-api:servlet-api 2.5
- stax-api:stax-api 1.0.1
- stax:stax 1.2.0
- tools:tools *
- us.levk:drmaa-common 1.0
- us.levk:drmaa-gridengine 6.2u5
- velocity-dep:velocity-dep 1.4
- zipfs:zipfs 1.8.0_111