dhspence/docker-amplicon-readcount : latest
GATK plus custom annotation script
Latest release: almost 9 years ago - 3,713 downloads - 716 dependencies
JSONDependencies
- debian/acl 2.2.52-2
- debian/adduser 3.113 nmu3
- debian/apt 1.0.9.8.4
- debian/base-files 8 deb8u7
- debian/base-passwd 3.5.37
- debian/bash 4.3-11 deb8u1
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- debian/bsdutils 1:2.25.2-6
- debian/bzip2 1.0.6-7 b3
- debian/bzr 2.6.0 bzr6595-6
- debian/ca-certificates-java 20140324
- debian/ca-certificates 20141019 deb8u2
- debian/coreutils 8.23-4
- debian/cracklib-runtime 2.9.2-1
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- debian/dbus 1.8.22-0 deb8u1
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- debian/debconf 1.5.56
- debian/debian-archive-keyring 2014.3
- debian/debianutils 4.4 b1
- debian/diffutils 1:3.3-1 b1
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- debian/dpkg 1.17.27
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- debian/geoip-database 20150317-1
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- US_export_policy:US_export_policy *
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- asm:asm 4.0
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- bsh:bsh 2.0b4
- charsets:charsets *
- cldrdata:cldrdata *
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- dnsns:dnsns *
- dt:dt *
- fastutil:fastutil 6.5.3
- freemarker:freemarker 2.3.18
- google-api-services-genomics-v1beta2-rev9:google-api-services-genomics-v1beta2-rev9 1.19.0
- google-genomics-utils-v1beta2:google-genomics-utils-v1beta2 0.19
- gov.nist.math.jama:gov.nist.math.jama 1.1.1
- htsjdk:htsjdk 2.4.1
- icedtea-sound:icedtea-sound *
- jaccess:jaccess *
- jama:jama 1.0.2
- java-atk-wrapper:java-atk-wrapper *
- javax.mail:mail 1.4.4
- jconsole:jconsole *
- jets3t:jets3t 0.8.1
- jsr305:jsr305 1.3.9
- jsr305:jsr305 2.0.1
- jsse:jsse 1.8.0_111
- junit:junit 3.8.1
- junit:junit 3.8.2
- junit:junit 4.10
- local_policy:local_policy *
- localedata:localedata *
- log4j:log4j 1.2.12
- log4j:log4j 1.2.14
- log4j:log4j 1.2.15
- management-agent:management-agent *
- nashorn:nashorn 1.8.0_111-8u111-b14-2~bpo8 1-b14
- ngs-java:ngs-java 1.2.2
- org.apache.ant:ant 1.8.1
- org.apache.commons.*:commons-cli 1.0
- org.apache.commons.beanutils:commons-beanutils 1.7.0
- org.apache.commons.digester:commons-digester 1.6
- org.apache.commons:commons-compress 1.4.1
- org.apache.commons:commons-exec 1.1
- org.apache.commons:commons-jexl 2.1.1
- org.apache.commons:commons-lang3 3.1
- org.apache.commons:commons-math3 3.5
- org.apache.commons:commons-math 2.2
- org.apache.httpcomponents:httpclient 4.1.1
- org.apache.httpcomponents:httpclient 4.2.3
- org.apache.httpcomponents:httpcore 4.1
- org.apache.httpcomponents:httpcore 4.2.2
- org.apache.maven.doxia:doxia-core 1.0
- org.apache.maven.doxia:doxia-core 1.1.2
- org.apache.maven.doxia:doxia-decoration-model 1.0
- org.apache.maven.doxia:doxia-decoration-model 1.1.4
- org.apache.maven.doxia:doxia-logging-api 1.1
- org.apache.maven.doxia:doxia-logging-api 1.1.4
- org.apache.maven.doxia:doxia-module-apt 1.0
- org.apache.maven.doxia:doxia-module-fml 1.0
- org.apache.maven.doxia:doxia-module-fml 1.1.4
- org.apache.maven.doxia:doxia-module-xdoc 1.0
- org.apache.maven.doxia:doxia-module-xhtml 1.0
- org.apache.maven.doxia:doxia-module-xhtml 1.1.4
- org.apache.maven.doxia:doxia-sink-api 1.0
- org.apache.maven.doxia:doxia-sink-api 1.0-alpha-7
- org.apache.maven.doxia:doxia-sink-api 1.1
- org.apache.maven.doxia:doxia-sink-api 1.1.4
- org.apache.maven.doxia:doxia-site-renderer 1.0
- org.apache.maven.doxia:doxia-site-renderer 1.1.4
- org.apache.maven.plugin-tools:maven-plugin-annotations 3.2
- org.apache.maven.plugins:maven-assembly-plugin 2.4
- org.apache.maven.plugins:maven-compiler-plugin 3.1
- org.apache.maven.plugins:maven-dependency-plugin 2.8
- org.apache.maven.plugins:maven-failsafe-plugin 2.16
- org.apache.maven.plugins:maven-install-plugin 2.5
- org.apache.maven.plugins:maven-invoker-plugin 1.8
- org.apache.maven.plugins:maven-jar-plugin 2.4
- org.apache.maven.plugins:maven-javadoc-plugin 2.9.1
- org.apache.maven.plugins:maven-resources-plugin 2.6
- org.apache.maven.plugins:maven-shade-plugin 2.4.3
- org.apache.maven.plugins:maven-surefire-plugin 2.16
- org.apache.maven.reporting:maven-reporting-api 2.0.6
- org.apache.maven.reporting:maven-reporting-api 2.0.9
- org.apache.maven.reporting:maven-reporting-api 2.2.1
- org.apache.maven.reporting:maven-reporting-api 3.0
- org.apache.maven.reporting:maven-reporting-impl 2.0.5
- org.apache.maven.reporting:maven-reporting-impl 2.1
- org.apache.maven.scm:maven-scm-api 1.2
- org.apache.maven.shared:file-management 1.1
- org.apache.maven.shared:file-management 1.2.1
- org.apache.maven.shared:maven-common-artifact-filters 1.3
- org.apache.maven.shared:maven-common-artifact-filters 1.4
- org.apache.maven.shared:maven-dependency-analyzer 1.4
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- org.apache.maven.shared:maven-doxia-tools 1.0.2
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- org.apache.maven.shared:maven-invoker 2.1.1
- org.apache.maven.shared:maven-repository-builder 1.0-alpha-2
- org.apache.maven.shared:maven-script-interpreter 1.1
- org.apache.maven.shared:maven-shared-incremental 1.1
- org.apache.maven.shared:maven-shared-io 1.1
- org.apache.maven.shared:maven-shared-utils 0.1
- org.apache.maven.shared:maven-shared-utils 0.4
- org.apache.maven.surefire:maven-surefire-common 2.16
- org.apache.maven.surefire:surefire-api 2.16
- org.apache.maven.surefire:surefire-booter 2.16
- org.apache.maven.wagon:wagon-provider-api 1.0-alpha-6
- org.apache.maven.wagon:wagon-provider-api 1.0-beta-6
- org.apache.maven:maven-aether-provider 3.0
- org.apache.maven:maven-archiver 2.5
- org.apache.maven:maven-artifact-manager 2.0.6
- org.apache.maven:maven-artifact-manager 2.0.9
- org.apache.maven:maven-artifact-manager 2.2.1
- org.apache.maven:maven-artifact 2.0
- org.apache.maven:maven-artifact 2.0.6
- org.apache.maven:maven-artifact 2.0.9
- org.apache.maven:maven-artifact 2.2.1
- org.apache.maven:maven-artifact 3.0
- org.apache.maven:maven-artifact 3.0.4
- org.apache.maven:maven-compat 3.0
- org.apache.maven:maven-core 2.0.6
- org.apache.maven:maven-core 2.0.9
- org.apache.maven:maven-core 2.2.1
- org.apache.maven:maven-core 3.0
- org.apache.maven:maven-error-diagnostics 2.0.6
- org.apache.maven:maven-error-diagnostics 2.0.9
- org.apache.maven:maven-error-diagnostics 2.2.1
- org.apache.maven:maven-model-builder 3.0
- org.apache.maven:maven-model 2.0.6
- org.apache.maven:maven-model 2.0.9
- org.apache.maven:maven-model 2.2.1
- org.apache.maven:maven-model 3.0
- org.apache.maven:maven-model 3.0.4
- org.apache.maven:maven-monitor 2.0.6
- org.apache.maven:maven-monitor 2.0.9
- org.apache.maven:maven-monitor 2.2.1
- org.apache.maven:maven-plugin-api 2.0
- org.apache.maven:maven-plugin-api 2.0.6
- org.apache.maven:maven-plugin-api 2.0.9
- org.apache.maven:maven-plugin-api 2.2.1
- org.apache.maven:maven-plugin-api 3.0
- org.apache.maven:maven-plugin-api 3.0.4
- org.apache.maven:maven-plugin-descriptor 2.0.6
- org.apache.maven:maven-plugin-descriptor 2.0.9
- org.apache.maven:maven-plugin-descriptor 2.2.1
- org.apache.maven:maven-plugin-parameter-documenter 2.0.6
- org.apache.maven:maven-plugin-parameter-documenter 2.0.9
- org.apache.maven:maven-plugin-parameter-documenter 2.2.1
- org.apache.maven:maven-plugin-registry 2.0.6
- org.apache.maven:maven-plugin-registry 2.0.9
- org.apache.maven:maven-plugin-registry 2.2.1
- org.apache.maven:maven-profile 2.0.6
- org.apache.maven:maven-profile 2.0.9
- org.apache.maven:maven-profile 2.2.1
- org.apache.maven:maven-project 2.0.6
- org.apache.maven:maven-project 2.0.9
- org.apache.maven:maven-project 2.2.1
- org.apache.maven:maven-repository-metadata 2.0.6
- org.apache.maven:maven-repository-metadata 2.0.9
- org.apache.maven:maven-repository-metadata 2.2.1
- org.apache.maven:maven-repository-metadata 3.0
- org.apache.maven:maven-settings-builder 3.0
- org.apache.maven:maven-settings 2.0.6
- org.apache.maven:maven-settings 2.0.9
- org.apache.maven:maven-settings 2.2.1
- org.apache.maven:maven-settings 3.0
- org.apache.maven:maven-toolchain 1.0
- org.apache.maven:maven-toolchain 2.0.9
- org.apache.maven:maven-toolchain 2.2.1
- org.apache.oro:oro 2.0.8
- org.apache.velocity:velocity 1.4
- org.apache.velocity:velocity 1.5
- org.apache.xbean:xbean-reflect 3.4
- org.apache.xerces.impl.Version:xercesImpl 2.8.1
- org.apache.xmlcommons.Version:xml-apis 1.0.b2
- org.apache:commons-httpclient 3.1
- org.apache:commons-logging-api 1.1
- org.broadinstitute.gatk.engine.CommandLineGATK:GenomeAnalysisTK *
- org.broadinstitute.gatk:gatk-engine 3.6
- org.broadinstitute.gatk:gatk-package-distribution 3.6
- org.broadinstitute.gatk:gatk-tools-protected 3.6
- org.broadinstitute.gatk:gatk-tools-public 3.6
- org.broadinstitute.gatk:gatk-utils 3.6
- org.codehaus.classworlds:classworlds 1.1
- org.codehaus.classworlds:classworlds 1.1-alpha-2
- org.codehaus.groovy:groovy-all 2.0.1
- org.codehaus.groovy:groovy 2.0.1
- org.codehaus.mojo:build-helper-maven-plugin 1.8
- org.codehaus.mojo:exec-maven-plugin 1.2.1
- org.codehaus.plexus:plexus-archiver 2.1
- org.codehaus.plexus:plexus-archiver 2.1.2
- org.codehaus.plexus:plexus-archiver 2.2
- org.codehaus.plexus:plexus-archiver 2.3
- org.codehaus.plexus:plexus-classworlds 2.2.2
- org.codehaus.plexus:plexus-classworlds 2.2.3
- org.codehaus.plexus:plexus-classworlds 2.4
- org.codehaus.plexus:plexus-compiler-api 2.2
- org.codehaus.plexus:plexus-compiler-javac 2.2
- org.codehaus.plexus:plexus-compiler-manager 2.2
- org.codehaus.plexus:plexus-component-annotations 1.5.5
- org.codehaus.plexus:plexus-container-default 1.0-alpha-9
- org.codehaus.plexus:plexus-container-default 1.0-alpha-9-stable-1
- org.codehaus.plexus:plexus-container-default 1.5.5
- org.codehaus.plexus:plexus-i18n 1.0-beta-7
- org.codehaus.plexus:plexus-interactivity-api 1.0-alpha-4
- org.codehaus.plexus:plexus-interpolation 1.11
- org.codehaus.plexus:plexus-interpolation 1.13
- org.codehaus.plexus:plexus-interpolation 1.14
- org.codehaus.plexus:plexus-interpolation 1.15
- org.codehaus.plexus:plexus-interpolation 1.2
- org.codehaus.plexus:plexus-interpolation 1.3
- org.codehaus.plexus:plexus-io 2.0.2
- org.codehaus.plexus:plexus-io 2.0.4
- org.codehaus.plexus:plexus-io 2.0.6
- org.codehaus.plexus:plexus-utils 1.0.4
- org.codehaus.plexus:plexus-utils 1.4.1
- org.codehaus.plexus:plexus-utils 1.5.1
- org.codehaus.plexus:plexus-utils 1.5.8
- org.codehaus.plexus:plexus-utils 2.0.5
- org.codehaus.plexus:plexus-utils 2.0.6
- org.codehaus.plexus:plexus-utils 3.0
- org.codehaus.plexus:plexus-utils 3.0.15
- org.codehaus.plexus:plexus-utils 3.0.22
- org.codehaus.plexus:plexus-utils 3.0.5
- org.codehaus.plexus:plexus-utils 3.0.7
- org.codehaus.plexus:plexus-utils 3.0.8
- org.codehaus.plexus:plexus-utils 3.0.9
- org.codehaus.plexus:plexus-velocity 1.1.7
- org.debian.security.UpdateCertificates:ca-certificates-java *
- org.dom4j:dom4j 1.6.1
- org.eclipse.aether:aether-util 0.9.0.M2
- org.hamcrest:hamcrest-core 1.1
- org.javassist:javassist 3.16.1-GA
- org.jdom:jdom 1.1
- org.jdom:jdom 1.1.3
- org.jgrapht.demo.JGraphAdapterDemo:jgrapht 0.8.3
- org.mortbay.jetty:jetty-util 6.1.26
- org.mortbay.jetty:jetty 6.1.26
- org.objectweb.asm.all:asm-all 5.0.4
- org.objectweb.asm.analysis:asm-analysis 5.0.4
- org.objectweb.asm.commons:asm-commons 5.0.2
- org.objectweb.asm.tree:asm-tree 5.0.2
- org.objectweb.asm.util:asm-util 5.0.4
- org.objectweb.asm:asm 5.0.2
- org.reflections:reflections 0.9.9-RC1
- org.simpleframework:simple-xml 2.0.4
- org.slf4j:jcl-over-slf4j 1.5.6
- org.slf4j:slf4j-api 1.5.6
- org.slf4j:slf4j-api 1.6.1
- org.slf4j:slf4j-jdk14 1.5.6
- org.slf4j:slf4j-log4j12 1.7.5
- org.sonatype.aether:aether-api 1.7
- org.sonatype.aether:aether-impl 1.7
- org.sonatype.aether:aether-spi 1.7
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- org.sonatype.plexus:plexus-build-api 0.0.4
- org.sonatype.plexus:plexus-cipher 1.4
- org.sonatype.plexus:plexus-sec-dispatcher 1.3
- org.sonatype.sisu.guava:sisu-guava 0.9.9
- org.sonatype.sisu.guice:sisu-guice 3.1.0-no_aop
- org.sonatype.sisu.sisu-guice-noaop:sisu-guice 2.1.7-noaop
- org.sonatype.sisu:sisu-inject-bean 1.4.2
- org.sonatype.sisu:sisu-inject-bean 2.3.0
- org.sonatype.sisu:sisu-inject-plexus 1.4.2
- org.sonatype.sisu:sisu-inject-plexus 2.3.0
- org.testng:testng 6.8
- org.tukaani.xz:xz 1.5
- org.uncommons:reportng 1.1.2
- org.vafer:jdependency 1.1
- org.xerial.snappy:snappy-java 1.0.3-rc3
- org.yaml:snakeyaml 1.6
- resources:resources 1.8.0_111
- rt:rt 1.8.0_111
- sa-jdi:sa-jdi *
- servlet-api:servlet-api 2.5
- stax-api:stax-api 1.0.1
- stax:stax 1.2.0
- tools:tools *
- us.levk:drmaa-common 1.0
- us.levk:drmaa-gridengine 6.2u5
- velocity-dep:velocity-dep 1.4
- zipfs:zipfs 1.8.0_111