dabbleofdevops/nextneopi : 20230817

Latest release: almost 2 years ago - 88 downloads - 499 dependencies

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Dependencies

BiocGenerics 0.32.0
GenomeInfoDb 1.22.0
GenomeInfoDbData 1.2.2
GenomicRanges 1.38.0
IRanges 2.20.0
KernSmooth 2.23-18
MASS 7.3-54
Matrix 1.3-3
R6 2.5.0
RColorBrewer 1.1-2
RCurl 1.98-1.2
Rcpp 1.0.6
S4Vectors 0.24.0
XVector 0.26.0
assertthat 0.2.1
backports 1.1.10
base 3.6.2
bitops 1.0-7
brio 1.1.2
caTools 1.18.2
callr 3.7.0
cli 2.5.0
clipr 0.7.1
colorspace 2.0-1
compiler 3.6.2
copynumber 1.26.0
cpp11 0.2.7
crayon 1.4.1
data.table 1.14.0
datasets 3.6.2
desc 1.3.0
diffobj 0.3.4
digest 0.6.27
dplyr 0.8.5
ellipsis 0.3.2
evaluate 0.14
fansi 0.4.2
farver 2.1.0
gdata 2.18.0
getopt 1.20.3
ggplot2 3.3.0
glue 1.4.2
gplots 3.0.3
grDevices 3.6.2
graphics 3.6.2
grid 3.6.2
gsalib 2.1
gtable 0.3.0
gtools 3.8.2
hms 1.1.0
iotools 0.3-1
isoband 0.2.4
jsonlite 1.7.2
labeling 0.4.2
lattice 0.20-44
lifecycle 1.0.0
magrittr 2.0.1
methods 3.6.2
mgcv 1.8-35
munsell 0.5.0
nlme 3.1-150
optparse 1.6.4
parallel 3.6.2
pbapply 1.4-3
pillar 1.6.1
pkgconfig 2.0.3
pkgload 1.2.1
plogr 0.2.0
praise 1.0.0
processx 3.5.2
ps 1.6.0
purrr 0.3.4
readr 1.4.0
rematch2 2.1.2
rlang 0.4.11
rprojroot 2.0.2
rstudioapi 0.13
scales 1.1.1
seqminer 8.0
sequenza 3.0.0
splines 3.6.2
squash 1.0.9
stats4 3.6.2
stats 3.6.2
tcltk 3.6.2
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
testthat 3.0.2
tibble 3.1.2
tidyselect 1.1.1
tools 3.6.2
translations 3.6.2
utf8 1.2.1
utils 3.6.2
vctrs 0.3.8
viridisLite 0.4.0
waldo 0.2.5
withr 2.4.2
zlibbioc 1.32.0

bash 5.0.17
java 11.0.8-internal 0-adhoc..src
python 3.10.9
python 3.6.10

args4j:args4j 2.33
cisd-jhdf5:cisd-jhdf5 *
com.carrotsearch:hppc 0.7.2
com.clearspring.analytics:stream 2.7.0
com.esotericsoftware:kryo-shaded 4.0.2
com.esotericsoftware:kryo 4.0.0
com.esotericsoftware:minlog 1.3.0
com.esotericsoftware:reflectasm 1.11.3
com.fasterxml.jackson.core:jackson-annotations 2.13.1
com.fasterxml.jackson.core:jackson-core 2.13.1
com.fasterxml.jackson.core:jackson-databind 2.13.1
com.fasterxml.jackson.jaxrs:jackson-jaxrs-base 2.13.1
com.fasterxml.jackson.jaxrs:jackson-jaxrs-json-provider 2.13.1
com.fasterxml.jackson.module:jackson-module-jaxb-annotations 2.13.1
com.fasterxml.woodstox:woodstox-core 5.0.3
com.github.fommil.netlib:core 1.1.2
com.github.fommil.netlib:native_ref-java 1.1
com.github.fommil.netlib:native_system-java 1.1
com.github.fommil.netlib:netlib-native_ref-linux-x86_64 1.1
com.github.fommil.netlib:netlib-native_ref-osx-x86_64 1.1
com.github.fommil.netlib:netlib-native_system-linux-x86_64 1.1
com.github.fommil.netlib:netlib-native_system-osx-x86_64 1.1
com.github.fommil:jniloader 1.1
com.github.jsr203hadoop:jsr203hadoop 1.0.3
com.github.rwl:jtransforms 2.4.0
com.github.stephenc.jcip:jcip-annotations 1.0-1
com.google.android:annotations 4.1.1.4
com.google.api-client:google-api-client 1.33.2
com.google.api.grpc:grpc-google-cloud-bigquerystorage-v1 2.9.1
com.google.api.grpc:grpc-google-cloud-bigquerystorage-v1beta1 0.133.1
com.google.api.grpc:grpc-google-cloud-bigquerystorage-v1beta2 0.133.1
com.google.api.grpc:proto-google-cloud-bigquerystorage-v1 2.9.1
com.google.api.grpc:proto-google-cloud-bigquerystorage-v1beta1 0.133.1
com.google.api.grpc:proto-google-cloud-bigquerystorage-v1beta2 0.133.1
com.google.api.grpc:proto-google-common-protos 2.7.4
com.google.api.grpc:proto-google-iam-v1 1.2.6
com.google.apis:google-api-services-bigquery v2-rev20220123-1.32.1
com.google.apis:google-api-services-storage v1-rev20220210-1.32.1
com.google.auth:google-auth-library-credentials 1.5.3
com.google.auth:google-auth-library-oauth2-http 1.5.3
com.google.auto.value:auto-value-annotations 1.9
com.google.cloud.bigdataoss:gcs-connector 1.9.4-hadoop3
com.google.cloud.bigdataoss:gcsio 1.9.4
com.google.cloud.bigdataoss:util-hadoop 1.9.4-hadoop3
com.google.cloud.bigdataoss:util 1.9.4
com.google.cloud:google-cloud-bigquery 2.9.0
com.google.cloud:google-cloud-bigquerystorage 2.9.1
com.google.cloud:google-cloud-core-http 2.5.6
com.google.cloud:google-cloud-core 2.5.6
com.google.cloud:google-cloud-nio 0.123.25
com.google.cloud:google-cloud-storage 2.4.5
com.google.code.findbugs:jsr305 3.0.2
com.google.code.gson:gson 2.9.0
com.google.errorprone:error_prone_annotations 2.11.0
com.google.guava:failureaccess 1.0.1
com.google.guava:guava 15.0
com.google.guava:guava 31.0.1-jre
com.google.guava:listenablefuture 9999.0-empty-to-avoid-conflict-with-guava
com.google.http-client:google-http-client-apache-v2 1.41.4
com.google.http-client:google-http-client-appengine 1.41.4
com.google.http-client:google-http-client-gson 1.41.4
com.google.http-client:google-http-client-jackson2 1.41.4
com.google.http-client:google-http-client 1.41.4
com.google.j2objc:j2objc-annotations 1.3
com.google.oauth-client:google-oauth-client 1.33.1
com.google.protobuf:protobuf-java-util 3.19.4
com.google.protobuf:protobuf-java 2.5.0
com.google.re2j:re2j 1.1
com.googlecode.json-simple:json-simple 1.1.1
com.googlecode.protobuf-java-format:protobuf-java-format 1.2
com.nimbusds:nimbus-jose-jwt 4.41.1
com.ning:compress-lzf 1.0.3
com.opencsv:opencsv 3.4
com.squareup.okhttp:okhttp 2.7.5
com.squareup.okio:okio 1.6.0
com.sun.jersey.contribs:jersey-guice 1.19
com.sun.jersey:jersey-client 1.19
com.sun.jersey:jersey-core 1.19
com.sun.jersey:jersey-json 1.19
com.sun.jersey:jersey-server 1.19
com.sun.jersey:jersey-servlet 1.19
com.thoughtworks.paranamer:paranamer 2.8
com.univocity:univocity-parsers 2.7.3
com.vlkan:flatbuffers 1.2.0-3f79e055
commons-beanutils:commons-beanutils 1.9.3
commons-cli:commons-cli 1.2
commons-codec:commons-codec 1.15
commons-collections:commons-collections 3.2.2
commons-io:commons-io 1.4
commons-io:commons-io 2.4
commons-io:commons-io 2.6
commons-lang:commons-lang 2.4
commons-lang:commons-lang 2.6
commons-logging:commons-logging 1.1.1
commons-logging:commons-logging 1.2
commons-net:commons-net 3.6
commons-pool:commons-pool 1.6
de.javakaffee:kryo-serializers 0.42
dnsjava:dnsjava 2.1.7
gov.nist.math.jama:gov.nist.math.jama 1.1.1
htsjdk:htsjdk 2.24.1-SNAPSHOT
io.airlift:aircompressor 0.10
io.dropwizard.metrics:metrics-core 3.1.5
io.dropwizard.metrics:metrics-graphite 3.1.5
io.dropwizard.metrics:metrics-json 3.1.5
io.dropwizard.metrics:metrics-jvm 3.1.5
io.netty:netty-all 4.1.42.Final
io.netty:netty 3.10.6.Final
jakarta.activation:jakarta.activation-api 1.2.2
jakarta.xml.bind:jakarta.xml.bind-api 2.3.3
jarhdf5:jarhdf5 2.11.0
javax.annotation:javax.annotation-api 1.3.2
javax.servlet:javax.servlet-api 3.1.0
javax.validation:validation-api 1.1.0.Final
javax.ws.rs:javax.ws.rs-api 2.0.1
javax.ws.rs:jsr311-api 1.1.1
javax.xml.bind:jaxb-api 2.2.11
jbzip2:jbzip2 0.9
jline:jline 0.9.94
joda-time:joda-time 2.9.9
jrt-fs:jrt-fs 11.0.8-internal
log4j:log4j 1.2.17
net.grey-panther:natural-comparator 1.1
net.minidev:accessors-smart 1.2
net.minidev:json-smart 2.3
net.razorvine:pyrolite 4.13
net.sf.jopt-simple:jopt-simple 5.0.3
net.sf.opencsv:opencsv 2.3
net.sf.py4j:py4j 0.10.7
net.sf.varscan.VarScan:VarScan *
org.aeonbits.owner:owner 1.0.9
org.antlr:antlr4-runtime 4.7
org.apache.arrow:arrow-format 0.10.0
org.apache.arrow:arrow-memory 0.10.0
org.apache.arrow:arrow-vector 0.10.0
org.apache.avro:avro-guava-dependencies 1.8.2
org.apache.avro:avro-ipc 1.8.2
org.apache.avro:avro-mapred 1.8.2
org.apache.avro:avro 1.8.2
org.apache.commons:commons-collections4 4.3
org.apache.commons:commons-compress 1.19
org.apache.commons:commons-configuration2 2.4
org.apache.commons:commons-crypto 1.0.0
org.apache.commons:commons-jexl 2.1.1
org.apache.commons:commons-lang3 3.6
org.apache.commons:commons-lang3 3.8.1
org.apache.commons:commons-math3 3.5
org.apache.commons:commons-text 1.6
org.apache.commons:commons-vfs2 2.0
org.apache.curator:curator-client 2.13.0
org.apache.curator:curator-framework 2.13.0
org.apache.curator:curator-recipes 2.13.0
org.apache.hadoop:hadoop-annotations 3.2.1
org.apache.hadoop:hadoop-auth 3.2.1
org.apache.hadoop:hadoop-client 3.2.1
org.apache.hadoop:hadoop-common 3.2.1
org.apache.hadoop:hadoop-hdfs-client 3.2.1
org.apache.hadoop:hadoop-mapreduce-client-common 3.2.1
org.apache.hadoop:hadoop-mapreduce-client-core 3.2.1
org.apache.hadoop:hadoop-mapreduce-client-jobclient 3.2.1
org.apache.hadoop:hadoop-yarn-api 3.2.1
org.apache.hadoop:hadoop-yarn-client 3.2.1
org.apache.hadoop:hadoop-yarn-common 3.2.1
org.apache.hive:hive-storage-api 2.6.0
org.apache.htrace:htrace-core4 4.1.0-incubating
org.apache.httpcomponents:httpclient 4.5.13
org.apache.httpcomponents:httpcore 4.4.15
org.apache.kerby:kerb-admin 1.0.1
org.apache.kerby:kerb-client 1.0.1
org.apache.kerby:kerb-common 1.0.1
org.apache.kerby:kerb-core 1.0.1
org.apache.kerby:kerb-crypto 1.0.1
org.apache.kerby:kerb-identity 1.0.1
org.apache.kerby:kerb-server 1.0.1
org.apache.kerby:kerb-simplekdc 1.0.1
org.apache.kerby:kerb-util 1.0.1
org.apache.kerby:kerby-asn1 1.0.1
org.apache.kerby:kerby-config 1.0.1
org.apache.kerby:kerby-pkix 1.0.1
org.apache.kerby:kerby-util 1.0.1
org.apache.kerby:kerby-xdr 1.0.1
org.apache.kerby:token-provider 1.0.1
org.apache.logging.log4j:log4j-api 2.17.1
org.apache.logging.log4j:log4j-core 2.17.1
org.apache.logging.log4j:log4j-jcl 2.17.1
org.apache.maven.scm:maven-scm-api 1.4
org.apache.maven.scm:maven-scm-provider-svn-commons 1.4
org.apache.maven.scm:maven-scm-provider-svnexe 1.4
org.apache.orc:orc-core 1.5.5
org.apache.orc:orc-mapreduce 1.5.5
org.apache.orc:orc-shims 1.5.5
org.apache.parquet:parquet-avro 1.10.1
org.apache.parquet:parquet-column 1.10.1
org.apache.parquet:parquet-common 1.10.1
org.apache.parquet:parquet-encoding 1.10.1
org.apache.parquet:parquet-format 2.4.0
org.apache.parquet:parquet-hadoop 1.10.1
org.apache.parquet:parquet-jackson 1.10.1
org.apache.spark:spark-catalyst_2.11 2.4.5
org.apache.spark:spark-core_2.11 2.4.5
org.apache.spark:spark-graphx_2.11 2.4.5
org.apache.spark:spark-kvstore_2.11 2.4.5
org.apache.spark:spark-launcher_2.11 2.4.5
org.apache.spark:spark-mllib-local_2.11 2.4.5
org.apache.spark:spark-mllib_2.11 2.4.5
org.apache.spark:spark-network-common_2.11 2.4.5
org.apache.spark:spark-network-shuffle_2.11 2.4.5
org.apache.spark:spark-sketch_2.11 2.4.5
org.apache.spark:spark-sql_2.11 2.4.5
org.apache.spark:spark-streaming_2.11 2.4.5
org.apache.spark:spark-tags_2.11 2.4.5
org.apache.spark:spark-unsafe_2.11 2.4.5
org.apache.xbean:xbean-asm-util 4.8
org.apache.xbean:xbean-asm6-shaded 4.8
org.apache.yetus:audience-annotations 0.5.0
org.bdgenomics.adam:adam-codegen-spark2_2.11 0.28.0
org.bdgenomics.adam:adam-core-spark2_2.11 0.28.0
org.bdgenomics.bdg-formats:bdg-formats 0.13.0
org.bdgenomics.utils:utils-cli-spark2_2.11 0.2.15
org.bdgenomics.utils:utils-intervalrdd-spark2_2.11 0.2.15
org.bdgenomics.utils:utils-io-spark2_2.11 0.2.15
org.bdgenomics.utils:utils-metrics-spark2_2.11 0.2.15
org.bdgenomics.utils:utils-misc-spark2_2.11 0.2.15
org.broadinstitute.hellbender.Main:gatk-package 4.2.6.1-local
org.codehaus.janino:commons-compiler 3.0.9
org.codehaus.janino:janino 3.0.9
org.codehaus.jettison:jettison 1.1
org.codehaus.mojo:animal-sniffer-annotations 1.20
org.codehaus.plexus:plexus-interpolation 1.0
org.codehaus.plexus:plexus-utils 1.5.6
org.codehaus.woodstox:stax2-api 3.1.4
org.disq-bio:disq 0.3.6
org.eclipse.jetty:jetty-client 9.3.27.v20190418
org.eclipse.jetty:jetty-continuation 9.3.27.v20190418
org.eclipse.jetty:jetty-http 9.3.27.v20190418
org.eclipse.jetty:jetty-io 9.3.27.v20190418
org.eclipse.jetty:jetty-plus 9.3.27.v20190418
org.eclipse.jetty:jetty-proxy 9.3.27.v20190418
org.eclipse.jetty:jetty-security 9.3.27.v20190418
org.eclipse.jetty:jetty-server 9.3.27.v20190418
org.eclipse.jetty:jetty-servlet 9.3.27.v20190418
org.eclipse.jetty:jetty-servlets 9.3.27.v20190418
org.eclipse.jetty:jetty-util 9.3.27.v20190418
org.eclipse.jetty:jetty-webapp 9.3.24.v20180605
org.eclipse.jetty:jetty-xml 9.3.24.v20180605
org.fusesource.leveldbjni:leveldbjni-all 1.8
org.genomicsdb:genomicsdb 1.4.3
org.glassfish.hk2.external:aopalliance-repackaged 2.4.0-b34
org.glassfish.hk2.external:javax.inject 2.4.0-b34
org.glassfish.hk2:hk2-api 2.4.0-b34
org.glassfish.hk2:hk2-locator 2.4.0-b34
org.glassfish.hk2:hk2-utils 2.4.0-b34
org.glassfish.hk2:osgi-resource-locator 1.0.1
org.glassfish.jersey.bundles.repackaged:jersey-guava 2.22.2
org.glassfish.jersey.containers:jersey-container-servlet-core 2.22.2
org.glassfish.jersey.containers:jersey-container-servlet 2.22.2
org.glassfish.jersey.core:jersey-client 2.22.2
org.glassfish.jersey.core:jersey-common 2.22.2
org.glassfish.jersey.core:jersey-server 2.22.2
org.glassfish.jersey.media:jersey-media-jaxb 2.22.2
org.javassist:javassist 3.18.2-GA
org.jgrapht:jgrapht-core 0.9.1
org.jpmml:pmml-model 1.2.15
org.jpmml:pmml-schema 1.2.15
org.json:json 20200518
org.jvnet:tiger-types 1.4
org.ojalgo:ojalgo-commons-math3 1.0.0
org.ojalgo:ojalgo 44.0.0
org.reflections:reflections 0.9.10
org.roaringbitmap:RoaringBitmap 0.7.45
org.roaringbitmap:shims 0.7.45
org.sharegov:mjson 1.4.1
org.slf4j:jcl-over-slf4j 1.7.16
org.slf4j:slf4j-api 1.7.30
org.slf4j:slf4j-log4j12 1.7.25
org.spark-project.spark:unused 1.0.0
org.threeten:threeten-extra 1.7.0
org.threeten:threetenbp 1.5.2
org.xerial:sqlite-jdbc 3.36.0.3
picard:picard 3.0.0

jquery-ui 1.12.1

Jinja2 3.0.3
Keras-Applications 1.0.8
Keras-Preprocessing 1.1.2
Keras 2.2.4
Mako 1.2.4
Markdown 3.4.3
MarkupSafe 2.0.1
PyQt5 5.12.3
PyQt5_sip 4.19.18
PyQtChart 5.12
PyQtWebEngine 5.12.1
PySocks 1.7.1
PyVCF 0.6.8
PyYAML 5.4.1
Pygments 2.14.0
Pyomo 6.1.2
Theano 1.0.4
Werkzeug 2.0.2
absl-py 1.4.0
astor 0.8.1
attrs 21.4.0
biopython 1.76
brotlipy 0.7.0
certifi 2021.5.30
certifi 2022.12.7
cffi 1.14.4
cffi 1.15.1
charset-normalizer 2.1.1
click 8.0.1
colorama 0.4.5
colorama 0.4.6
coloredlogs 15.0.1
colormath 3.0.0
commonmark 0.9.1
conda-package-handling 2.0.2
conda 22.11.1
conda_package_streaming 0.7.0
cryptography 35.0.0
cryptography 39.0.1
cycler 0.11.0
dataclasses 0.8
decorator 4.4.2
future 0.18.2
gast 0.5.3
gatkpythonpackages 0.1
grpcio 1.38.1
h5py 2.10.0
humanfriendly 10.0
idna 3.4
importlib-metadata 4.8.1
joblib 1.2.0
kiwisolver 1.3.1
libmambapy 1.1.0
lzstring 1.0.4
mamba 1.1.0
markdown-it-py 2.0.1
matplotlib 3.2.1
mdurl 0.1.0
mkl-service 2.3.0
mock 5.0.1
multiqc 1.14
networkx 2.5.1
numexpr 2.7.3
numpy 1.17.5
pandas 1.0.3
patsy 0.5.3
pip 20.0.2
pip 23.0
pluggy 1.0.0
ply 3.11
protobuf 3.18.0
pyOpenSSL 22.0.0
pyOpenSSL 23.0.0
pycosat 0.6.4
pycparser 2.21
pygpu 0.7.6
pymc3 3.1
pyparsing 3.0.9
pysam 0.16.0
python-dateutil 2.8.2
pytz 2023.2
requests 2.28.1
requests 2.28.2
rich-click 1.3.0
rich 13.2.0
ruamel.yaml.clib 0.2.7
ruamel.yaml 0.17.21
scikit-learn 0.23.1
scipy 1.0.0
sequenza-utils 3.0.0
setuptools 58.0.4
setuptools 65.6.3
simplejson 3.17.5
six 1.16.0
spectra 0.0.11
tables 3.6.1
tensorboard 1.13.1
tensorflow-estimator 1.13.0
tensorflow 1.13.1
termcolor 1.1.0
threadpoolctl 3.1.0
toolz 0.12.0
tornado 6.1
tqdm 4.64.1
tqdm 4.65.0
typing_extensions 4.1.1
urllib3 1.26.14
urllib3 1.26.15
wheel 0.37.1
wheel 0.38.4
zipp 3.6.0
zstandard 0.19.0

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dabbleofdevops/nextneopi : 20230817

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