Ecosyste.ms: Docker

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cwong23/stx_env : latest

Environment for spatial pipeline

Latest release: over 1 year ago - 9 downloads - 1,606 dependencies

JSON

Dependencies

deldir 1.0-9
digest 0.6.31
dplyr 1.1.2
dqrng 0.3.0
edgeR 3.40.2
ellipsis 0.3.2
evaluate 0.21
fansi 1.0.4
farver 2.1.1
fastmap 1.1.1
filelock 1.0.2
fitdistrplus 1.1-11
fontawesome 0.5.1
formatR 1.14
fs 1.6.2
futile.logger 1.4.3
futile.options 1.0.1
future.apply 1.11.0
future 1.32.0
generics 0.1.3
ggbeeswarm 0.7.1
ggplot2 3.4.2
ggrastr 1.0.1
ggrepel 0.9.3
ggridges 0.5.4
globals 0.16.2
glue 1.6.2
goftest 1.2-3
gplots 3.1.3
grDevices 4.2.3
graphics 4.2.3
grid 4.2.3
gridExtra 2.3
gtable 0.3.3
gtools 3.9.4
hdf5r 1.3.8
here 1.0.1
hexbin 1.28.3
highr 0.10
htmltools 0.5.5
htmlwidgets 1.6.2
httpuv 1.6.11
httr 1.4.6
ica 1.0-3
igraph 1.4.3
irlba 2.3.5.1
isoband 0.2.7
jquerylib 0.1.4
jsonlite 1.8.4
knitr 1.43
labeling 0.4.2
lambda.r 1.2.4
later 1.3.1
lattice 0.21-8
lazyeval 0.2.2
leiden 0.4.3
lifecycle 1.0.3
limma 3.54.2
listenv 0.9.0
lmtest 0.9-40
locfit 1.5-9.7
magrittr 2.0.3
matrixStats 0.63.0
maxLik 1.5-2
mclust 6.0.0
memoise 2.0.1
metapod 1.6.0
methods 4.2.3
mgcv 1.8-42
mime 0.12
miniUI 0.1.1.1
miscTools 0.6-28
morebeach 1.0.0
morebeachtests 1.0.0
munsell 0.5.0
nlme 3.1-162
openssl 2.0.6
parallel 4.2.3
parallelly 1.36.0
patchwork 1.1.2
pbapply 1.7-0
pheatmap 1.0.12
pillar 1.9.0
pkgconfig 2.0.3
plogr 0.2.0
plotly 4.10.1
plyr 1.8.8
png 0.1-8
polyclip 1.10-4
progressr 0.13.0
promises 1.2.0.1
purrr 1.0.1
ragg 1.2.5
rappdirs 0.3.3
remotes 2.4.2
reshape2 1.4.4
reticulate 1.28
rhdf5 2.42.1
rhdf5filters 1.10.1
rlang 1.1.1
rmarkdown 2.21
rpart 4.1.19
rprojroot 2.0.3
rsvd 1.0.5
sandwich 3.0-2
sass 0.4.6
scales 1.2.1
scater 1.26.1
scattermore 1.1
scran 1.26.2
sctransform 0.3.5
scuttle 1.8.4
shiny 1.7.4
sitmo 2.0.2
snow 0.4-4
sourcetools 0.1.7-1
sp 1.6-1
sparseMatrixStats 1.10.0
spatstat.core 2.4-4
spatstat.data 3.0-1
spatstat.geom 3.2-1
spatstat.random 3.1-4
spatstat.sparse 3.0-1
spatstat.utils 3.0-3
splines 4.2.3
statmod 1.5.0
stats4 4.2.3
stats 4.2.3
stringi 1.7.12
stringr 1.5.0
survival 3.5-5
sys 3.4.2
systemfonts 1.0.4
tcltk 4.2.3
tensor 1.5
testRcppAttributePackage 1.0
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
textshaping 0.3.6
tibble 3.2.1
tidyr 1.3.0
tidyselect 1.2.0
tinytex 0.45
tools 4.2.3
translations 4.2.3
utf8 1.2.3
utils 4.2.3
uwot 0.1.14
vctrs 0.6.2
vipor 0.4.5
viridis 0.6.2
viridisLite 0.4.2
withr 2.5.0
xfun 0.39
xgboost 1.7.5.1
xtable 1.8-4
yaml 2.3.7
zlibbioc 1.44.0
zoo 1.8-12
@PKGNAME@ @VERSION@
BH 1.81.0-1
BayesSpace 1.8.2
Biobase 2.58.0
BiocFileCache 2.6.1
BiocGenerics 0.44.0
BiocManager 1.30.20
BiocNeighbors 1.16.0
BiocParallel 1.32.6
BiocSingular 1.14.0
BiocVersion 3.16.0
Cairo 1.6-0
DBI 1.1.3
DelayedArray 0.24.0
DelayedMatrixStats 1.20.0
DirichletReg 0.7-1
FNN 1.1.3.2
Formula 1.2-5
GenomeInfoDb 1.34.9
GenomeInfoDbData 1.2.9
GenomicRanges 1.50.2
IRanges 2.32.0
KernSmooth 2.23-21
MASS 7.3-58.3
Matrix 1.5-4
MatrixGenerics 1.10.0
R6 2.5.1
RANN 2.6.1
RColorBrewer 1.1-3
RCurl 1.98-1.12
ROCR 1.0-11
RSQLite 2.3.1
Rcpp 1.0.10
RcppAnnoy 0.0.20
RcppArmadillo 0.12.4.0.0
RcppDist 0.1.1
RcppEigen 0.3.3.9.3
RcppGSL 0.3.13
RcppGSLExample 0.0.3
RcppHNSW 0.4.1
RcppML 0.3.7
RcppProgress 0.4.2
RcppProgressArmadillo 0.2
RcppProgressETA 0.1
RcppProgressExample 0.2
RcppTOML 0.2.2
RcppZiggurat 0.1.6
Rfast2 0.1.3
Rfast 2.0.7
Rhdf5lib 1.20.0
Rtsne 0.16
S4Vectors 0.36.2
ScaledMatrix 1.6.0
Seurat 4.1.1
SeuratObject 4.1.3
SingleCellExperiment 1.20.1
SummarizedExperiment 1.28.0
XVector 0.38.0
abind 1.4-5
askpass 1.1
assertthat 0.2.1
backports 1.4.1
base64enc 0.1-3
base 4.2.3
beachmat 2.14.2
beachtest 1.0.0
beeswarm 0.4.0
bit64 4.0.5
bit 4.0.5
bitops 1.0-7
blob 1.2.4
bluster 1.8.0
bslib 0.4.2
caTools 1.18.2
cachem 1.0.8
cli 3.6.1
cluster 2.1.4
coda 0.19-4
codetools 0.2-19
colorspace 2.1-0
commonmark 1.9.0
compiler 4.2.3
cowplot 1.1.1
cpp11 0.4.3
crayon 1.5.2
crosstalk 1.2.0
curl 5.0.0
data.table 1.14.8
datasets 4.2.3
dbplyr 2.3.2

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level 6.0.1
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lib0 0.2.42
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lodash.clonedeep 4.5.0
lodash.curry 4.1.1
lodash.debounce 4.0.8
lodash.escape 4.0.1
lodash.includes 4.3.0
lodash.isboolean 3.0.3
lodash.isinteger 4.0.4
lodash.isnumber 3.0.3
lodash.isplainobject 4.0.6
lodash.isstring 4.0.1
lodash.once 4.1.1
lodash 4.17.20
lodash 4.17.21
long 4.0.0
loose-envify 1.4.0
lowdb 1.0.0
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marked 4.0.17
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mime-db 1.52.0
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mime 1.6.0
mime 2.4.6
mime 3.0.0
mimic-fn 2.1.0
mimic-response 1.0.1
mini-css-extract-plugin 1.3.9
minimatch 3.0.4
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minipass 3.1.3
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moment 2.29.4
ms 2.0.0
ms 2.1.2
ms 2.1.3
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mv 2.1.1
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napi-macros 2.0.0
ncp 2.0.0
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neo-async 2.6.2
next-tick 1.0.0
next-tick 1.1.0
no-case 3.0.4
node-fetch 2.6.1
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npm-run-path 4.0.1
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nwsapi 2.2.0
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once 1.4.0
onetime 5.1.2
opener 1.5.2
optionator 0.8.3
os-tmpdir 1.0.2
os 0.1.1
p-cancelable 1.1.0
p-limit 2.3.0
p-limit 3.1.0
p-locate 4.1.0
p-map 4.0.0
p-try 2.2.0
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parse-srcset 1.0.2
parse5 6.0.1
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path-type 4.0.0
performance-now 2.1.0
picocolors 1.0.0
picomatch 2.3.0
pify 3.0.0
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pino-std-serializers 3.2.0
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pkg-dir 4.2.0
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postcss-modules-extract-imports 3.0.0
postcss-modules-local-by-default 4.0.0
postcss-modules-scope 3.0.0
postcss-modules-values 4.0.0
postcss-selector-parser 6.0.6
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postcss 8.3.11
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prettier 2.1.2
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pretty-ms 7.0.1
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process 0.11.10
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proxy-addr 2.0.7
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rc 1.2.8
react-base16-styling 0.8.0
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react-is 16.13.1
react-json-tree 0.15.0
react-lifecycles-compat 3.0.4
react-paginate 6.5.0
react-popper 1.3.11
react-transition-group 2.9.0
react 17.0.2
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readdirp 3.6.0
rechoir 0.7.0
regenerator-runtime 0.13.7
regexp.prototype.flags 1.3.1
registry-auth-token 4.2.1
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request-promise-core 1.1.4
request-promise-native 1.0.9
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rimraf 2.4.5
rimraf 3.0.2
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rw 1.3.3
rxjs 6.6.7
safe-buffer 5.1.2
safe-buffer 5.2.1
safer-buffer 2.1.2
sanitize-html 2.5.3
saxes 5.0.1
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semver 6.3.0
semver 7.3.7
send 0.18.0
serialize-javascript 5.0.1
serialize-javascript 6.0.0
serve-static 1.15.0
set-blocking 2.0.0
setprototypeof 1.2.0
shallow-clone 3.0.1
shebang-command 2.0.0
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side-channel 1.0.4
signal-exit 3.0.3
simple-swizzle 0.2.2
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sonic-boom 1.4.1
sort-object-keys 1.1.3
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sshpk 1.16.1
ssri 8.0.1
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stealthy-require 1.1.1
steno 0.4.4
string-width 4.2.2
string_decoder 1.1.1
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style-loader 2.0.0
supports-color 5.5.0
supports-color 7.2.0
supports-color 8.1.1
supports-preserve-symlinks-flag 1.0.0
svg-url-loader 6.0.0
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terser-webpack-plugin 4.2.3
terser-webpack-plugin 5.1.4
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terser 5.7.1
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through 2.3.8
timers-ext 0.1.7
tmp 0.0.33
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to-string-loader 1.1.6
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topojson-client 3.1.0
tough-cookie 2.4.3
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tough-cookie 4.0.0
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type-fest 0.21.3
type-is 1.6.18
type 1.2.0
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uglify-js 3.4.10
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unpipe 1.0.0
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url-loader 4.1.1
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util-deprecate 1.0.2
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v8-compile-cache 2.3.0
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validator 13.7.0
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vega-embed 6.18.2
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vega-event-selector 3.0.0
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vega-expression 5.0.0
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vega-selections 5.3.1
vega-statistics 1.7.10
vega-themes 2.10.0
vega-time 2.0.4
vega-tooltip 0.25.1
vega-transforms 4.9.4
vega-typings 0.22.0
vega-util 1.16.1
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vega-view-transforms 4.5.8
vega-view 5.10.1
vega-voronoi 4.1.5
vega-wordcloud 4.1.3
vega 5.21.0
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verdaccio-htpasswd 10.5.0
verdaccio 5.13.3
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warning 4.0.3
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webidl-conversions 3.0.1
webidl-conversions 5.0.0
webidl-conversions 6.1.0
webpack-bundle-analyzer 3.9.0
webpack-cli 4.7.2
webpack-merge 5.8.0
webpack-sources 1.4.3
webpack-sources 2.3.0
webpack 5.44.0
whatwg-encoding 1.0.5
whatwg-fetch 3.6.2
whatwg-mimetype 2.3.0
whatwg-url 5.0.0
whatwg-url 8.7.0
which-module 2.0.0
which 2.0.2
wildcard 2.0.0
word-wrap 1.2.3
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worker-loader 3.0.8
wrap-ansi 7.0.0
wrappy 1.0.2
ws 6.2.2
ws 7.5.9
xml-name-validator 3.0.0
xmlchars 2.2.0
xtend 4.0.2
xterm-addon-fit 0.5.0
xterm 4.19.0
y-codemirror 3.0.1
y-leveldb 0.1.0
y-protocols 1.0.5
y-websocket 1.3.16
y18n 4.0.3
y18n 5.0.8
yallist 4.0.0
yargs-parser 18.1.3
yargs-parser 20.2.9
yargs 17.1.1
yarn-deduplicate 2.1.1
yjs 13.5.17
yocto-queue 0.1.0

coverage 5.5