Ecosyste.ms: Docker

An open API service providing dependency metadata for docker images.

crukmi/target-snakemake-docker : latest

Latest release: over 2 years ago - 21 downloads - 1,148 dependencies

JSON

Dependencies

@PKGNAME@ @VERSION@
BH 1.78.0-0
Biobase 2.46.0
BiocGenerics 0.32.0
BiocManager 1.30.16
BiocParallel 1.20.1
BiocVersion 3.10.1
Biostrings 2.54.0
DBI 1.1.3
DelayedArray 0.12.3
GenomeInfoDb 1.22.1
GenomeInfoDbData 1.2.2
GenomicAlignments 1.22.1
GenomicRanges 1.38.0
IRanges 2.20.2
KernSmooth 2.23-15
MASS 7.3-51.4
Matrix 1.2-17
R6 2.5.1
RColorBrewer 1.1-3
RCurl 1.98-1.7
Rcpp 1.0.9
Rhtslib 1.18.1
Rsamtools 2.2.3
S4Vectors 0.24.4
SummarizedExperiment 1.16.1
XML 3.99-0.3
XVector 0.26.0
askpass 1.1
assertthat 0.2.1
backports 1.4.1
base64enc 0.1-3
base 3.6.0
bio3d 2.4-2
bit64 4.0.5
bit 4.0.4
bitops 1.0-7
blob 1.2.3
boot 1.3-22
broom 1.0.0
bslib 0.4.0
cachem 1.0.6
callr 3.7.1
cellranger 1.1.0
class 7.3-15
cli 3.3.0
clipr 0.8.0
cluster 2.0.8
codetools 0.2-16
colorspace 2.0-3
compiler 3.6.0
cpp11 0.4.2
crayon 1.5.1
curl 4.3.2
data.table 1.14.2
datasets 3.6.0
dbplyr 2.2.1
digest 0.6.29
dplyr 1.0.9
dtplyr 1.2.1
ellipsis 0.3.2
evaluate 0.15
fansi 1.0.3
farver 2.1.1
fastmap 1.1.0
forcats 0.5.1
foreign 0.8-71
formatR 1.12
fs 1.5.2
futile.logger 1.4.3
futile.options 1.0.1
gargle 1.2.0
generics 0.1.3
ggplot2 3.3.6
glue 1.6.2
googledrive 2.0.0
googlesheets4 1.0.0
grDevices 3.6.0
graphics 3.6.0
grid 3.6.0
gtable 0.3.0
haven 2.5.0
highr 0.9
hms 1.1.1
htmltools 0.5.3
httr 1.4.3
ids 1.0.1
isoband 0.2.5
jquerylib 0.1.4
jsonlite 1.8.0
knitr 1.39
labeling 0.4.2
lambda.r 1.2.4
lattice 0.20-38
lifecycle 1.0.1
lubridate 1.8.0
magrittr 2.0.3
matrixStats 0.62.0
memoise 2.0.1
methods 3.6.0
mgcv 1.8-28
mime 0.12
modelr 0.1.8
munsell 0.5.0
nlme 3.1-139
nnet 7.3-12
openssl 2.0.2
openxlsx 4.2.5
parallel 3.6.0
pillar 1.8.0
pkgconfig 2.0.3
prettyunits 1.1.1
processx 3.7.0
progress 1.2.2
ps 1.7.1
purrr 0.3.4
rJava 1.0-6
rappdirs 0.3.3
readr 2.1.2
readxl 1.4.0
rematch2 2.1.2
rematch 1.0.1
remotes 2.4.2
reprex 2.0.1
rlang 1.0.4
rmarkdown 2.14
rpart 4.1-15
rstudioapi 0.13
rtracklayer 1.46.0
rvest 1.0.2
sass 0.4.2
scales 1.2.0
selectr 0.4-2
snow 0.4-4
spatial 7.3-11
splines 3.6.0
stats4 3.6.0
stats 3.6.0
stringi 1.7.8
stringr 1.4.0
survival 2.44-1.1
sys 3.4
tcltk 3.6.0
testRcppAttributePackage 1.0
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
tibble 3.1.7
tidyr 1.2.0
tidyselect 1.1.2
tidyverse 1.3.1
tinytex 0.40
tools 3.6.0
translations 3.6.0
tzdb 0.3.0
utf8 1.2.2
utils 3.6.0
uuid 1.1-0
vctrs 0.4.1
viridisLite 0.4.0
vroom 1.5.7
withr 2.5.0
xfun 0.31
xlsx 0.6.5
xlsxjars 0.6.1
xml2 1.3.3
yaml 2.3.5
zip 2.2.0
zlibbioc 1.32.0

JRI:JRI *
JRIEngine:JRIEngine *
REngine:REngine *
US_export_policy:US_export_policy *
args4j:args4j 2.33
charsets:charsets *
cisd-jhdf5:cisd-jhdf5 *
cldrdata:cldrdata *
com.beust:jcommander 1.27
com.carrotsearch:hppc 0.7.2
com.clearspring.analytics:stream 2.7.0
com.esotericsoftware:kryo-shaded 4.0.2
com.esotericsoftware:kryo 4.0.0
com.esotericsoftware:minlog 1.3.0
com.esotericsoftware:reflectasm 1.10.0
com.esotericsoftware:reflectasm 1.11.3
com.fasterxml.jackson.core:jackson-annotations 2.9.8
com.fasterxml.jackson.core:jackson-core 2.1.3
com.fasterxml.jackson.core:jackson-core 2.9.9
com.fasterxml.jackson.core:jackson-databind 2.9.8
com.fasterxml.jackson.jaxrs:jackson-jaxrs-base 2.9.8
com.fasterxml.jackson.jaxrs:jackson-jaxrs-json-provider 2.9.8
com.fasterxml.jackson.module:jackson-module-jaxb-annotations 2.9.8
com.fasterxml.jackson.module:jackson-module-paranamer 2.9.8
com.fasterxml.woodstox:woodstox-core 5.0.3
com.github.fommil.netlib:core 1.1
com.github.fommil.netlib:core 1.1.2
com.github.fommil.netlib:native_ref-java 1.1
com.github.fommil.netlib:native_system-java 1.1
com.github.fommil.netlib:netlib-native_ref-linux-x86_64 1.1
com.github.fommil.netlib:netlib-native_ref-osx-x86_64 1.1
com.github.fommil.netlib:netlib-native_system-linux-x86_64 1.1
com.github.fommil.netlib:netlib-native_system-osx-x86_64 1.1
com.github.fommil:jniloader 1.1
com.github.jsr203hadoop:jsr203hadoop 1.0.3
com.github.rwl:jtransforms 2.4.0
com.github.stephenc.jcip:jcip-annotations 1.0-1
com.google.android:annotations 4.1.1.4
com.google.api-client:google-api-client 1.30.10
com.google.api.grpc:grpc-google-cloud-bigquerystorage-v1 1.5.1
com.google.api.grpc:grpc-google-cloud-bigquerystorage-v1beta1 0.105.1
com.google.api.grpc:grpc-google-cloud-bigquerystorage-v1beta2 0.105.1
com.google.api.grpc:proto-google-cloud-bigquerystorage-v1 1.5.1
com.google.api.grpc:proto-google-cloud-bigquerystorage-v1alpha2 0.105.1
com.google.api.grpc:proto-google-cloud-bigquerystorage-v1beta1 0.105.1
com.google.api.grpc:proto-google-cloud-bigquerystorage-v1beta2 0.105.1
com.google.api.grpc:proto-google-common-protos 1.18.0
com.google.apis:google-api-services-bigquery v2-rev20200818-1.30.10
com.google.apis:google-api-services-genomics v1beta2-rev9-1.19.0
com.google.apis:google-api-services-storage v1-rev135-1.24.1
com.google.apis:google-api-services-storage v1-rev20190910-1.30.3
com.google.auth:google-auth-library-credentials 0.18.0
com.google.auth:google-auth-library-oauth2-http 0.18.0
com.google.auto.value:auto-value-annotations 1.6.6
com.google.cloud.bigdataoss:gcs-connector 1.9.4-hadoop3
com.google.cloud.bigdataoss:gcsio 1.9.4
com.google.cloud.bigdataoss:util-hadoop 1.9.4-hadoop3
com.google.cloud.bigdataoss:util 1.9.4
com.google.cloud.genomics:gatk-tools-java 1.1
com.google.cloud.genomics:google-genomics-utils v1beta2-0.19
com.google.cloud:google-cloud-bigquery 1.117.1
com.google.cloud:google-cloud-bigquerystorage 1.5.1
com.google.cloud:google-cloud-core-http 1.91.3
com.google.cloud:google-cloud-core 1.91.3
com.google.cloud:google-cloud-nio 0.117.0-alpha
com.google.cloud:google-cloud-storage 1.99.0
com.google.code.findbugs:jsr305 3.0.2
com.google.code.gson:gson 2.8.6
com.google.errorprone:error_prone_annotations 2.3.3
com.google.guava:failureaccess 1.0.1
com.google.guava:guava 11.0.2
com.google.guava:guava 15.0
com.google.guava:guava 27.1-jre
com.google.guava:listenablefuture 9999.0-empty-to-avoid-conflict-with-guava
com.google.http-client:google-http-client-appengine 1.32.1
com.google.http-client:google-http-client-jackson2 1.36.0
com.google.http-client:google-http-client 1.36.0
com.google.j2objc:j2objc-annotations 1.3
com.google.oauth-client:google-oauth-client 1.31.0
com.google.protobuf:protobuf-java-util 3.10.0
com.google.protobuf:protobuf-java 3.10.0
com.google.re2j:re2j 1.1
com.googlecode.json-simple:json-simple 1.1.1
com.googlecode.protobuf-java-format:protobuf-java-format 1.2
com.jamesmurty.utils:java-xmlbuilder 0.4
com.nimbusds:nimbus-jose-jwt 4.41.1
com.ning:compress-lzf 1.0.3
com.opencsv:opencsv 3.4
com.squareup.okhttp:okhttp 2.7.5
com.squareup.okio:okio 1.6.0
com.sun.jersey.contribs:jersey-guice 1.19
com.sun.jersey:jersey-client 1.19
com.sun.jersey:jersey-core 1.19
com.sun.jersey:jersey-json 1.19
com.sun.jersey:jersey-server 1.19
com.sun.jersey:jersey-servlet 1.19
com.sun:jce 1.8.0_332
com.sun:sunec 1.8.0_332
com.sun:sunjce_provider 1.8.0_332
com.sun:sunpkcs11 1.8.0_332
com.thoughtworks.paranamer:paranamer 2.8
com.univocity:univocity-parsers 2.7.3
com.vlkan:flatbuffers 1.2.0-3f79e055
commons-beanutils:commons-beanutils 1.9.3
commons-cli:commons-cli 1.2
commons-codec:commons-codec 1.11
commons-codec:commons-codec 1.6
commons-collections:commons-collections 3.2.1
commons-collections:commons-collections 3.2.2
commons-io:commons-io 1.4
commons-io:commons-io 2.1
commons-io:commons-io 2.4
commons-io:commons-io 2.6
commons-lang:commons-lang 2.4
commons-lang:commons-lang 2.5
commons-lang:commons-lang 2.6
commons-logging:commons-logging 1.1.1
commons-logging:commons-logging 1.2
commons-net:commons-net 3.6
commons-pool:commons-pool 1.6
cran:rexcel 0.5.1
de.javakaffee:kryo-serializers 0.42
dnsjava:dnsjava 2.1.7
dnsns:dnsns *
dt:dt *
gov.nist.math.jama:gov.nist.math.jama 1.1.1
io.airlift:aircompressor 0.10
io.dropwizard.metrics:metrics-core 3.1.5
io.dropwizard.metrics:metrics-graphite 3.1.5
io.dropwizard.metrics:metrics-json 3.1.5
io.dropwizard.metrics:metrics-jvm 3.1.5
io.netty:netty-all 4.1.42.Final
io.netty:netty-buffer 4.1.48.Final
io.netty:netty-codec-http2 4.1.48.Final
io.netty:netty-codec-http 4.1.48.Final
io.netty:netty-codec-socks 4.1.48.Final
io.netty:netty-codec 4.1.48.Final
io.netty:netty-common 4.1.48.Final
io.netty:netty-handler-proxy 4.1.48.Final
io.netty:netty-handler 4.1.48.Final
io.netty:netty-resolver 4.1.48.Final
io.netty:netty-tcnative-boringssl-static 2.0.30.Final
io.netty:netty-transport-native-epoll 4.1.48.Final
io.netty:netty-transport-native-unix-common 4.1.48.Final
io.netty:netty-transport 4.1.48.Final
io.netty:netty 3.10.6.Final
jaccess:jaccess *
jarhdf5:jarhdf5 2.11.0
javax.annotation:javax.annotation-api 1.3.2
javax.mail:mail 1.4.4
javax.servlet:javax.servlet-api 3.1.0
javax.validation:validation-api 1.1.0.Final
javax.ws.rs:javax.ws.rs-api 2.0.1
javax.ws.rs:jsr311-api 1.1.1
javax.xml.bind:jaxb-api 2.2.11
jbzip2:jbzip2 0.9
jconsole:jconsole *
jfr:jfr 1.8.0_332
jline:jline 0.9.94
joda-time:joda-time 2.9.9
jsse:jsse 1.8.0_332
local_policy:local_policy *
localedata:localedata *
log4j:log4j 1.2.15
log4j:log4j 1.2.17
management-agent:management-agent *
nashorn:nashorn 1.8.0_332-b09
net.grey-panther:natural-comparator 1.1
net.minidev:accessors-smart 1.2
net.minidev:json-smart 2.3
net.razorvine:pyrolite 4.13
net.sf.jopt-simple:jopt-simple 5.0.3
net.sf.opencsv:opencsv 2.3
net.sf.py4j:py4j 0.10.7
org.aeonbits.owner:owner 1.0.9
org.antlr:antlr4-runtime 4.7
org.apache.arrow:arrow-format 0.10.0
org.apache.arrow:arrow-memory 0.10.0
org.apache.arrow:arrow-vector 0.10.0
org.apache.avro:avro-guava-dependencies 1.8.2
org.apache.avro:avro-ipc 1.8.2
org.apache.avro:avro-mapred 1.8.2
org.apache.avro:avro 1.8.2
org.apache.commons:commons-collections4 4.3
org.apache.commons:commons-compress 1.19
org.apache.commons:commons-compress 1.4.1
org.apache.commons:commons-configuration2 2.4
org.apache.commons:commons-crypto 1.0.0
org.apache.commons:commons-jexl 2.1.1
org.apache.commons:commons-lang3 3.4
org.apache.commons:commons-lang3 3.8.1
org.apache.commons:commons-math3 3.5
org.apache.commons:commons-math 2.2
org.apache.commons:commons-text 1.6
org.apache.commons:commons-vfs2 2.0
org.apache.curator:curator-client 2.13.0
org.apache.curator:curator-framework 2.13.0
org.apache.curator:curator-recipes 2.13.0
org.apache.hadoop:hadoop-annotations 3.2.1
org.apache.hadoop:hadoop-auth 3.2.1
org.apache.hadoop:hadoop-client 3.2.1
org.apache.hadoop:hadoop-common 3.2.1
org.apache.hadoop:hadoop-hdfs-client 3.2.1
org.apache.hadoop:hadoop-mapreduce-client-common 3.2.1
org.apache.hadoop:hadoop-mapreduce-client-core 3.2.1
org.apache.hadoop:hadoop-mapreduce-client-jobclient 3.2.1
org.apache.hadoop:hadoop-yarn-api 3.2.1
org.apache.hadoop:hadoop-yarn-client 3.2.1
org.apache.hadoop:hadoop-yarn-common 3.2.1
org.apache.hive:hive-storage-api 2.6.0
org.apache.htrace:htrace-core4 4.1.0-incubating
org.apache.httpcomponents:httpclient 4.1.1
org.apache.httpcomponents:httpclient 4.5.10
org.apache.httpcomponents:httpcore 4.1
org.apache.httpcomponents:httpcore 4.4.12
org.apache.kerby:kerb-admin 1.0.1
org.apache.kerby:kerb-client 1.0.1
org.apache.kerby:kerb-common 1.0.1
org.apache.kerby:kerb-core 1.0.1
org.apache.kerby:kerb-crypto 1.0.1
org.apache.kerby:kerb-identity 1.0.1
org.apache.kerby:kerb-server 1.0.1
org.apache.kerby:kerb-simplekdc 1.0.1
org.apache.kerby:kerb-util 1.0.1
org.apache.kerby:kerby-asn1 1.0.1
org.apache.kerby:kerby-config 1.0.1
org.apache.kerby:kerby-pkix 1.0.1
org.apache.kerby:kerby-util 1.0.1
org.apache.kerby:kerby-xdr 1.0.1
org.apache.kerby:token-provider 1.0.1
org.apache.logging.log4j:log4j-api 2.17.1
org.apache.logging.log4j:log4j-api 2.5
org.apache.logging.log4j:log4j-core 2.17.1
org.apache.logging.log4j:log4j-core 2.5
org.apache.logging.log4j:log4j-jcl 2.17.1
org.apache.maven.scm:maven-scm-api 1.4
org.apache.maven.scm:maven-scm-provider-svn-commons 1.4
org.apache.maven.scm:maven-scm-provider-svnexe 1.4
org.apache.orc:orc-core 1.5.5
org.apache.orc:orc-mapreduce 1.5.5
org.apache.orc:orc-shims 1.5.5
org.apache.parquet:parquet-avro 1.10.1
org.apache.parquet:parquet-column 1.10.1
org.apache.parquet:parquet-common 1.10.1
org.apache.parquet:parquet-encoding 1.10.1
org.apache.parquet:parquet-format 2.4.0
org.apache.parquet:parquet-hadoop 1.10.1
org.apache.parquet:parquet-jackson 1.10.1
org.apache.poi:poi-ooxml-schemas 3.10.1-20140818
org.apache.poi:poi-ooxml 3.10.1-20140818
org.apache.poi:poi 3.10.1-20140818
org.apache.spark:spark-catalyst_2.11 2.4.5
org.apache.spark:spark-core_2.11 2.4.5
org.apache.spark:spark-graphx_2.11 2.4.5
org.apache.spark:spark-kvstore_2.11 2.4.5
org.apache.spark:spark-launcher_2.11 2.4.5
org.apache.spark:spark-mllib-local_2.11 2.4.5
org.apache.spark:spark-mllib_2.11 2.4.5
org.apache.spark:spark-network-common_2.11 2.4.5
org.apache.spark:spark-network-shuffle_2.11 2.4.5
org.apache.spark:spark-sketch_2.11 2.4.5
org.apache.spark:spark-sql_2.11 2.4.5
org.apache.spark:spark-streaming_2.11 2.4.5
org.apache.spark:spark-tags_2.11 2.4.5
org.apache.spark:spark-unsafe_2.11 2.4.5
org.apache.xbean:xbean-asm-util 4.8
org.apache.xbean:xbean-asm6-shaded 4.8
org.apache.xmlbeans:xmlbeans 2.6.0
org.apache.yetus:audience-annotations 0.5.0
org.bdgenomics.adam:adam-codegen-spark2_2.11 0.28.0
org.bdgenomics.adam:adam-core-spark2_2.11 0.28.0
org.bdgenomics.bdg-formats:bdg-formats 0.13.0
org.bdgenomics.utils:utils-cli-spark2_2.11 0.2.15
org.bdgenomics.utils:utils-intervalrdd-spark2_2.11 0.2.15
org.bdgenomics.utils:utils-io-spark2_2.11 0.2.15
org.bdgenomics.utils:utils-metrics-spark2_2.11 0.2.15
org.bdgenomics.utils:utils-misc-spark2_2.11 0.2.15
org.broadinstitute.gatk.engine.CommandLineGATK:GenomeAnalysisTK *
org.broadinstitute.gatk:gatk-engine 3.5
org.broadinstitute.gatk:gatk-package-distribution 3.5
org.broadinstitute.gatk:gatk-tools-protected 3.5
org.broadinstitute.gatk:gatk-tools-public 3.5
org.broadinstitute.gatk:gatk-utils 3.5
org.broadinstitute.hellbender.Main:gatk-package 4.2.5.0-local
org.broadinstitute.hellbender.Main:gatk-package 4.2.5.0-spark
org.codehaus.janino:commons-compiler 3.0.9
org.codehaus.janino:janino 3.0.9
org.codehaus.jettison:jettison 1.1
org.codehaus.mojo:animal-sniffer-annotations 1.18
org.codehaus.plexus:plexus-interpolation 1.0
org.codehaus.plexus:plexus-utils 1.5.6
org.codehaus.woodstox:stax2-api 3.1.4
org.disq-bio:disq 0.3.6
org.dom4j:dom4j 1.6.1
org.eclipse.jetty:jetty-client 9.3.27.v20190418
org.eclipse.jetty:jetty-continuation 9.3.27.v20190418
org.eclipse.jetty:jetty-http 9.3.27.v20190418
org.eclipse.jetty:jetty-io 9.3.27.v20190418
org.eclipse.jetty:jetty-plus 9.3.27.v20190418
org.eclipse.jetty:jetty-proxy 9.3.27.v20190418
org.eclipse.jetty:jetty-security 9.3.27.v20190418
org.eclipse.jetty:jetty-server 9.3.27.v20190418
org.eclipse.jetty:jetty-servlet 9.3.27.v20190418
org.eclipse.jetty:jetty-servlets 9.3.27.v20190418
org.eclipse.jetty:jetty-util 9.3.27.v20190418
org.eclipse.jetty:jetty-webapp 9.3.24.v20180605
org.eclipse.jetty:jetty-xml 9.3.24.v20180605
org.fusesource.leveldbjni:leveldbjni-all 1.8
org.genomicsdb:genomicsdb 1.4.3
org.glassfish.hk2.external:aopalliance-repackaged 2.4.0-b34
org.glassfish.hk2.external:javax.inject 2.4.0-b34
org.glassfish.hk2:hk2-api 2.4.0-b34
org.glassfish.hk2:hk2-locator 2.4.0-b34
org.glassfish.hk2:hk2-utils 2.4.0-b34
org.glassfish.hk2:osgi-resource-locator 1.0.1
org.glassfish.jersey.bundles.repackaged:jersey-guava 2.22.2
org.glassfish.jersey.containers:jersey-container-servlet-core 2.22.2
org.glassfish.jersey.containers:jersey-container-servlet 2.22.2
org.glassfish.jersey.core:jersey-client 2.22.2
org.glassfish.jersey.core:jersey-common 2.22.2
org.glassfish.jersey.core:jersey-server 2.22.2
org.glassfish.jersey.media:jersey-media-jaxb 2.22.2
org.javassist:javassist 3.16.1-GA
org.javassist:javassist 3.18.2-GA
org.jctools:jctools-core 3.0.0
org.jgrapht:jgrapht-core 0.9.1
org.jpmml:pmml-model 1.2.15
org.jpmml:pmml-schema 1.2.15
org.json:json 20200518
org.jvnet:tiger-types 1.4
org.mortbay.jetty:jetty-util 6.1.26
org.mortbay.jetty:jetty 6.1.26
org.ojalgo:ojalgo-commons-math3 1.0.0
org.ojalgo:ojalgo 44.0.0
org.reflections:reflections 0.9.10
org.reflections:reflections 0.9.9-RC1
org.roaringbitmap:RoaringBitmap 0.7.45
org.roaringbitmap:shims 0.7.45
org.sharegov:mjson 1.4.1
org.simpleframework:simple-xml 2.0.4
org.slf4j:jcl-over-slf4j 1.7.16
org.slf4j:slf4j-api 1.6.1
org.slf4j:slf4j-api 1.7.30
org.slf4j:slf4j-log4j12 1.7.25
org.slf4j:slf4j-log4j12 1.7.5
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