cmccornack/crmsc : latest

Latest release: about 2 years ago - 374 downloads - 1,476 dependencies

Dependencies

@PKGNAME@ @PKGVERSION@
@PKGNAME@ @VERSION@
ALL 1.36.0
AnnotationDbi 1.56.2
AnnotationFilter 1.18.0
AnnotationHub 3.2.2
ArchR 1.0.2
Azimuth 0.4.6.9002
BBmisc 1.13
BH 1.81.0-1
BSgenome.Hsapiens.UCSC.hg38 1.4.4
BSgenome 1.62.0
Biobase 2.54.0
BiocFileCache 2.2.1
BiocGenerics 0.40.0
BiocIO 1.4.0
BiocManager 1.30.21.1
BiocNeighbors 1.12.0
BiocParallel 1.28.3
BiocSingular 1.10.0
BiocVersion 3.14.0
Biostrings 2.62.0
CNEr 1.30.0
Cairo 1.6-0
CellChat 1.6.1
ComplexHeatmap 2.15.4
ConsensusClusterPlus 1.58.0
DBI 1.1.3
DDRTree 0.1.5
DESeq2 1.34.0
DEoptimR 1.0-14
DO.db 2.9
DOSE 3.20.1
DT 0.28
DelayedArray 0.20.0
DelayedMatrixStats 1.16.0
DiagrammeR 1.0.10
DiceKriging 1.6.0
DirichletMultinomial 1.36.0
DoubletCollection 1.1.0
DoubletFinder 2.0.3
DropletUtils 1.14.2
EnsDb.Hsapiens.v75 2.99.0
EnsDb.Hsapiens.v79 2.99.0
EnsDb.Hsapiens.v86 2.99.0
EnsDb.Mmusculus.v79 2.99.0
ExperimentHub 2.2.1
FNN 1.1.3.2
FactoMineR 2.8
Formula 1.2-5
GGally 2.1.2
GO.db 3.14.0
GOSemSim 2.20.0
GSEABase 1.56.0
GSVA 1.42.0
GenomeInfoDb 1.30.1
GenomeInfoDbData 1.2.7
GenomicAlignments 1.30.0
GenomicFeatures 1.46.5
GenomicRanges 1.46.1
GetoptLong 1.0.5
GlobalOptions 0.1.2
Gviz 1.38.4
HDF5Array 1.22.1
HGNChelper 0.8.1
HSMMSingleCell 1.14.0
Hmisc 5.1-0
IDPmisc 1.1.20
IRanges 2.28.0
JASPAR2020 0.99.10
KEGGREST 1.34.0
KernSmooth 2.23-20
MASS 7.3-54
MAST 1.20.0
MUDAN 0.1.0
Matrix.utils 0.9.8
Matrix 1.3-3
Matrix 1.6-0
MatrixGenerics 1.6.0
MatrixModels 0.5-2
ModelMetrics 1.2.2.2
N2R 1.0.1
NMF 0.26
PRROC 1.3.1
ParamHelpers 1.14.1
ProtGenerics 1.26.0
R.methodsS3 1.8.2
R.oo 1.25.0
R.utils 2.12.2
R6 2.5.1
RANN 2.6.1
RApiSerialize 0.1.2
RBGL 1.70.0
RColorBrewer 1.1-3
RCurl 1.98-1.12
RMTstat 0.3.1
ROCR 1.0-11
RProtoBufLib 2.6.0
RSQLite 2.3.1
RSpectra 0.16-1
RUnit 0.4.32
Rcpp 1.0.11
RcppAnnoy 0.0.21
RcppArmadillo 0.12.4.1.0
RcppEigen 0.3.3.9.3
RcppGSL 0.3.10
RcppGSLExample 0.0.3
RcppHNSW 0.4.1
RcppNumerical 0.5-0
RcppParallel 5.1.7
RcppProgress 0.4.2
RcppProgressArmadillo 0.2
RcppProgressETA 0.1
RcppProgressExample 0.2
RcppRoll 0.3.0
RcppSpdlog 0.0.8
RcppTOML 0.2.2
RcppZiggurat 0.1.6
Rdpack 2.4
RdpackTester 1.0
ResidualMatrix 1.4.0
Rfast2 0.1.1
Rfast 2.0.6
Rgraphviz 2.38.0
Rhdf5lib 1.16.0
RhpcBLASctl 0.23-42
Rhtslib 1.26.0
Rook 1.1-1
Rsamtools 2.10.0
Rtsne 0.16
S4Vectors 0.32.4
SCINA 1.2.0
SCopeLoomR 0.13.0
SQUAREM 2021.1
ScaledMatrix 1.2.0
Scissor 2.0.0
Seurat 4.9.9.9058
SeuratData 0.2.2.9001
SeuratDisk 0.0.0.9020
SeuratObject 4.9.9.9091
crayon 1.5.2
credentials 1.3.2
SeuratWrappers 0.3.19
Signac 1.9.0.9000
SingleCellExperiment 1.16.0
SingleR 1.8.1
SnowballC 0.7.0
SparseM 1.81
SummarizedExperiment 1.24.0
TFBSTools 1.32.0
TFMPvalue 0.0.9
TFisher 0.2.0
TH.data 1.1-0
TMB 1.9.5
TrajectoryUtils 1.2.0
UpSetR 1.4.0
VGAM 1.1-7
VISION 3.0.1
VariantAnnotation 1.40.0
WGCNA 1.71
XML 3.99-0.14
XVector 0.34.0
abind 1.4-5
annotate 1.72.0
aod 1.3.2
ape 5.7-1
apeglm 1.16.0
aplot 0.1.6
ash 1.0-15
askpass 1.1
assertthat 0.2.1
aws.s3 0.3.21
aws.signature 0.6.0
babelgene 22.9
backports 1.4.1
base64enc 0.1-3
base 4.1.0
batchelor 1.10.0
bbmle 1.0.25
bdsmatrix 1.3-6
beachmat 2.10.0
beachtest 1.0.0
beeswarm 0.4.0
biocViews 1.62.1
biomaRt 2.50.3
biovizBase 1.42.0
bit64 4.0.5
bit 4.0.5
bitops 1.0-7
blme 1.0-5
blob 1.2.4
bluster 1.4.0
bmp 0.3
boot 1.3-28
brew 1.0-8
brio 1.1.3
broom 1.0.5
bslib 0.5.0
caTools 1.18.2
cachem 1.0.8
callr 3.7.3
car 3.1-2
carData 3.0-5
caret 6.0-94
cccd 1.6
celldex 1.4.0
cellranger 1.1.0
checkmate 2.2.0
chromVAR 1.16.0
cicero 1.3.7
circlize 0.4.16
class 7.3-19
classInt 0.4-9
cli 3.6.1
clipr 0.8.0
clock 0.7.0
clue 0.3-64
cluster 2.1.2
cluster 2.1.4
clusterGeneration 1.3.7
clusterProfiler 4.2.2
coda 0.19-4
codetools 0.2-18
colorRamps 2.3.1
colorspace 2.1-0
combinat 0.0-8
commonmark 1.9.0
compiler 4.1.0
corpcor 1.6.10
corrplot 0.92
cowplot 1.1.1
cpp11 0.4.5
crosstalk 1.2.0
curl 5.0.1
data.table 1.14.8
datasets 4.1.0
dbplyr 2.3.2
dbscan 1.1-11
deSolve 1.36
deldir 1.0-9
dendextend 1.17.1
dendsort 0.3.4
densityClust 0.3.2
desc 1.4.2
devtools 2.4.5
diagram 1.6.5
dichromat 2.0-0.1
diffobj 0.3.5
digest 0.6.33
distr 2.8.0
dittoSeq 1.6.0
doParallel 1.0.17
docopt 0.7.1
dotCall64 1.0-2
downlit 0.4.3
downloader 0.4
dplyr 1.1.2
dqrng 0.3.0
drat 0.2.3
dynamicTreeCut 1.63-1
e1071 1.7-13
edgeR 3.36.0
ellipse 0.5.0
ellipsis 0.3.2
emdbook 1.3.13
emmeans 1.8.7
emoa 0.5-0.2
enrichR 3.0
enrichplot 1.14.2
ensembldb 2.18.4
entropy 1.3.1
estimability 1.4.1
evaluate 0.21
exactextractr 0.9.1
expm 0.999-7
factoextra 1.0.7
fansi 1.0.4
farver 2.1.1
fastDummies 1.7.3
fastICA 1.2-3
fastcluster 1.2.3
fastmap 1.1.1
fastmatch 1.1-3
fdrtool 1.2.17
fgsea 1.20.0
fields 14.0
filelock 1.0.2
fitdistrplus 1.1-11
flashClust 1.01-2
fontawesome 0.5.1
forcats 1.0.0
foreach 1.5.2
foreign 0.8-81
formatR 1.14
fs 1.6.3
furrr 0.3.1
futile.logger 1.4.3
futile.options 1.0.1
future.apply 1.11.0
future 1.33.0
gam 1.22
gargle 1.4.0
garnett 0.2.19
genefilter 1.76.0
geneplotter 1.72.0
generics 0.1.3
geomnet 0.3.1
gert 1.9.2
ggalluvial 0.12.5
gganimate 1.0.7
ggbeeswarm 0.7.2
ggforce 0.4.1
ggfun 0.0.6
ggnetwork 0.5.12
ggnewscale 0.4.9
ggplot2 3.4.2
ggplotify 0.1.0
ggpointdensity 0.1.0
ggprism 1.0.4
ggpubr 0.6.0
ggraph 2.1.0
ggrastr 1.0.1
ggrepel 0.9.3
ggridges 0.5.4
ggsci 3.0.0
ggseqlogo 0.1
ggsignif 0.6.4
ggthemes 4.2.4
ggtree 3.2.1
gh 1.4.0
gitcreds 0.1.2
glasso 1.11
glmGamPoi 1.6.0
glmmTMB 1.1.7
glmnet 4.1-4
globals 0.16.2
glue 1.6.2
goftest 1.2-3
googleVis 0.7.1
googledrive 2.1.0
googlesheets4 1.1.0
gower 1.0.1
gplots 3.1.3
grDevices 4.1.0
graph 1.72.0
graphics 4.1.0
graphlayouts 1.0.0
grid 4.1.0
gridBase 0.4-7
gridExtra 2.3
gridGraphics 0.5-1
grr 0.9.5
gtable 0.3.3
gtools 3.9.4
hardhat 1.3.0
harmony 0.1.0
hdf5r 1.3.8
here 1.0.1
hexbin 1.28.2
highr 0.10
hms 1.1.3
htmlTable 2.4.1
htmltools 0.5.5
htmlwidgets 1.6.2
httpuv 1.6.11
httr2 0.2.3
httr 1.4.6
ica 1.0-3
ids 1.0.1
igraph 1.5.0.1
impute 1.68.0
ini 0.3.1
interactiveDisplayBase 1.32.0
interp 1.1-4
iotools 0.3-2
ipred 0.9-14
irlba 2.3.5.1
isoband 0.2.7
iterators 1.0.14
janitor 2.2.0
jpeg 0.1-10
jquerylib 0.1.4
jsonlite 1.8.7
kernlab 0.9-32
knitr 1.43
labeling 0.4.2
lambda.r 1.2.4
later 1.3.1
lattice 0.20-44
latticeExtra 0.6-30
lava 1.7.2.1
lazyeval 0.2.2
leaps 3.1
leiden 0.4.3
leidenbase 0.1.9
lhs 1.1.6
lifecycle 1.0.3
limma 3.50.3
listenv 0.9.0
littler 0.3.12
lme4 1.1-34
lmerTest 3.1-3
lmtest 0.9-40
locfdr 1.1-8
locfit 1.5-9.8
loe 1.1
logging 0.10-108
lsa 0.73.3
lubridate 1.9.2
lwgeom 0.2-13
magrittr 2.0.3
maps 3.4.1
mathjaxr 1.6-0
matrixStats 1.0.0
mclust 6.0.0
memoise 2.0.1
metapod 1.2.0
methods 4.1.0
mgcv 1.8-35
mime 0.12
miniUI 0.1.1.1
minqa 1.2.5
mixtools 1.2.0
mlr 2.19.1
mlrMBO 1.1.5.1
mnormt 2.1.1
monocle3 1.2.11
monocle 2.22.0
morebeach 1.0.0
morebeachtests 1.0.0
motifmatchr 1.16.0
msigdbr 7.5.1
multcomp 1.4-18
multcompView 0.1-9
multicool 0.1-12
multinichenetr 1.0.0
multtest 2.50.0
munsell 0.5.0
muscat 1.8.2
mutoss 0.1-12
mvtnorm 1.2-2
mvtnormAPI 1.0-0
nabor 0.5.0
network 1.18.1
nichenetr 2.0.0
nlme 3.1-152
nloptr 2.0.3
nnet 7.3-16
numDeriv 2016.8-1.1
openssl 2.1.0
openxlsx 4.2.5.2
optimParallel 1.0-2
org.Ce.eg.db 3.14.0
org.Dm.eg.db 3.14.0
org.Hs.eg.db 3.14.0
org.Mm.eg.db 3.14.0
org.testing.db 0.1
pROC 1.18.4
pagoda2 1.0.10
paletteer 1.5.0
parallel 4.1.0
parallelMap 1.5.1
parallelly 1.36.0
patchwork 1.1.2
pbapply 1.7-2
pbkrtest 0.5.2
pbmcapply 1.5.1
pcaPP 2.0-3
penalized 0.9-52
permute 0.9-7
phangorn 2.11.1
pheatmap 1.0.12
phytools 1.5-1
pillar 1.9.0
pkgbuild 1.4.2
pkgconfig 2.0.3
pkgdown 2.0.7
pkgload 1.3.2.1
plogr 0.2.0
plotly 4.10.2
plotrix 3.8-2
plumber 1.2.1.9000
plyr 1.8.8
png 0.1-8
polyclip 1.10-4
polynom 1.4-1
poweRlaw 0.70.6
pracma 2.4.2
praise 1.0.0
preprocessCore 1.56.0
presto 1.0.0
prettyunits 1.1.1
princurve 2.1.6
prismatic 1.1.1
processx 3.8.2
prodlim 2023.03.31
profvis 0.3.8
progress 1.2.2
progressr 0.13.0
promises 1.2.0.1
proxy 0.4-27
ps 1.7.5
pscl 1.5.5
psych 2.3.3
purrr 1.0.1
qlcMatrix 0.9.7
qs 0.25.5
quadprog 1.5-8
quantreg 5.96
qvalue 2.26.0
ragg 1.2.5.9000
randomForest 4.7-1.1
rappdirs 0.3.3
raster 3.6-23
rbibutils 2.2.13
rcartocolor 2.1.0
rcmdcheck 1.4.0
readbitmap 0.1.5
readr 2.1.4
recipes 1.0.6
registry 0.5-1
rematch2 2.1.2
rematch 1.0.1
remotes 2.4.2
reshape2 1.4.4
reshape 0.8.9
restfulr 0.0.15
reticulate 1.30
rgdal 1.6-7
rgeos 0.6-3
rhdf5 2.38.1
rhdf5filters 1.6.0
riverplot 0.10
rjson 0.2.21
rlang 1.1.1
rliger 1.0.0
rlist 0.4.6.2
rly 1.7.4
rmarkdown 2.23
rngtools 1.5.2
robustbase 0.99-0
roxygen2 7.2.3
rpart 4.1-15
rprojroot 2.0.3
rrcov 1.7-4
rsample 1.1.0
rstatix 0.7.2
rstudioapi 0.15.0
rsvd 1.0.5
rtracklayer 1.54.0
rversions 2.1.2
s2 1.1.4
sandwich 3.0-1
sass 0.4.7
scCATCH 3.1
scCustomize 1.1.1
scDblFinder 1.8.0
scImpute 0.0.9
scRNAseq 2.8.0
scWGCNA 1.0.0
scales 1.2.1
scater 1.22.0
scattermore 1.2
scatterpie 0.1.7
scatterplot3d 0.3-44
sccore 1.0.1
scds 1.13.1
scmap 1.16.0
scran 1.18.7
sctransform 0.3.5
scuttle 1.4.0
segmented 1.4-0
seqLogo 1.60.0
sessioninfo 1.2.2
sf 1.0-14
sfsmisc 1.1-12
shadowtext 0.1.2
shape 1.4.6
shiny 1.7.4.1
shinyBS 0.61.1
shinydashboard 0.7.2
shinyjs 2.1.0
singleCellHaystack 0.3.4
sitmo 2.0.2
slam 0.1-50
slider 0.2.2
slingshot 2.2.1
smoof 1.6.0.3
sn 2.0.2
sna 2.7-1
snakecase 0.11.0
snow 0.4-4
sodium 1.2.1
sourcetools 0.1.7-1
sp 2.0-0
spData 2.2.0
spam 2.9-1
sparseMatrixStats 1.6.0
sparsesvd 0.2-2
spatial 7.3-14
spatstat.core 2.4-4
spatstat.data 3.0-1
spatstat.explore 3.2-1
spatstat.geom 3.2-2
spatstat.random 3.1-5
spatstat.sparse 3.0-2
spatstat.utils 3.0-3
spdep 1.2-5
speedglm 0.3-4
splines 4.1.0
stars 0.6-1
startupmsg 0.9.6
statmod 1.5.0
statnet.common 4.9.0
stats4 4.1.0
stats 4.1.0
stringfish 0.15.8
stringi 1.7.12
stringr 1.5.0
survival 3.2-11
sva 3.42.0
svglite 2.1.1
swagger 3.33.1
sys 3.4.2
systemfonts 1.0.4
tcltk 4.1.0
tensor 1.5
terra 1.7-39
testRcppAttributePackage 1.0
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
testthat 3.1.10
textshaping 0.3.6
tibble 3.2.1
tidygraph 1.2.3
tidyr 1.3.0
tidyselect 1.2.0
tidytree 0.3.9
tiff 0.1-11
timeDate 4022.108
timechange 0.2.0
tinytex 0.45
tmvnsim 1.0-2
tools 4.1.0
translations 4.1.0
treeio 1.18.1
triebeard 0.3.0
tweenr 2.0.2
tzdb 0.4.0
umap 0.2.10.0
units 0.8-2
urlchecker 1.0.1
urltools 1.7.3
usethis 2.2.2
utf8 1.2.3
utils 4.1.0
uuid 1.1-0
uwot 0.1.16
variancePartition 1.24.1
vctrs 0.6.3
vegan 2.6-4
vipor 0.4.5
viridis 0.6.4
viridisLite 0.4.2
visNetwork 2.1.2
vroom 1.6.3
waldo 0.5.1
warp 0.2.0
webutils 1.1
whisker 0.4.1
withr 2.5.0
wk 0.7.3
wordspace 0.2-8
xfun 0.39
xgboost 1.6.0.1
xml2 1.3.5
xopen 1.0.0
xtable 1.8-4
yaml 2.3.7
yulab.utils 0.0.5
zip 2.3.0
zlibbioc 1.40.0
zoo 1.8-12

setuptools 45.2.0
threadpoolctl 3.1.0
tqdm 4.63.0
umap-learn 0.5.2
wheel 0.34.2
MACS2 2.2.7.1
PyYAML 5.3.1
Pygments 2.3.1
joblib 1.1.0
llvmlite 0.38.0
mypy 0.902
numba 0.55.1
numpy 1.22.3
pip 20.0.2
pip 22.2.2
pynndescent 0.5.6
scikit-learn 1.0.2
scipy 1.8.0

bash 5.0.17

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cmccornack/crmsc : latest

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