brusconi/seurat : latest
Latest release: about 2 years ago - 189 downloads - 536 dependencies
JSONDependencies
- @PKGNAME@ @VERSION@
- AnnotationDbi 1.62.2
- AnnotationHub 3.8.0
- BH 1.81.0-1
- Biobase 2.60.0
- BiocFileCache 2.8.0
- BiocGenerics 0.46.0
- BiocIO 1.10.0
- BiocManager 1.30.21
- BiocNeighbors 1.18.0
- BiocParallel 1.34.2
- BiocSingular 1.16.0
- BiocVersion 3.17.1
- Biostrings 2.68.1
- Cairo 1.6-0
- DBI 1.1.3
- DEoptimR 1.0-14
- DT 0.28
- DelayedArray 0.26.6
- DelayedMatrixStats 1.22.1
- ExperimentHub 2.8.0
- FNN 1.1.3.2
- GGally 2.1.2
- GenomeInfoDb 1.36.1
- GenomeInfoDbData 1.2.10
- GenomicAlignments 1.36.0
- GenomicRanges 1.52.0
- HDF5Array 1.28.1
- HiddenMarkov 1.8-13
- IRanges 2.34.1
- IRdisplay 1.1
- KEGGREST 1.40.0
- KernSmooth 2.23-16
- KernSmooth 2.23-22
- MASS 7.3-51.5
- MASS 7.3-60
- Matrix 1.2-18
- Matrix 1.6-0
- MatrixGenerics 1.12.2
- MatrixModels 0.5-2
- R6 2.5.1
- RANN 2.6.1
- RColorBrewer 1.1-3
- RCurl 1.98-1.12
- ROCR 1.0-11
- RSQLite 2.3.1
- RSpectra 0.16-1
- Rcpp 1.0.11
- RcppAnnoy 0.0.21
- RcppArmadillo 0.12.4.1.0
- RcppEigen 0.3.3.9.3
- RcppGSL 0.3.13
- RcppGSLExample 0.0.3
- RcppHNSW 0.4.1
- RcppML 0.3.7
- RcppParallel 5.1.7
- RcppProgress 0.4.2
- RcppProgressArmadillo 0.2
- RcppProgressETA 0.1
- RcppProgressExample 0.2
- RcppTOML 0.2.2
- Rdpack 2.4
- RdpackTester 1.0
- Rhdf5lib 1.22.0
- Rhtslib 2.2.0
- Rsamtools 2.16.0
- Rtsne 0.16
- S4Arrays 1.0.4
- S4Vectors 0.38.1
- ScaledMatrix 1.8.1
- Seurat 4.9.9.9045
- SeuratObject 4.9.9.9084
- SingleCellExperiment 1.22.0
- SingleR 2.2.0
- SparseM 1.81
- SummarizedExperiment 1.30.2
- TFisher 0.2.0
- TH.data 1.1-2
- XML 3.99-0.14
- XVector 0.40.0
- abind 1.4-5
- annotate 1.78.0
- ape 5.7-1
- argparse 2.2.2
- askpass 1.1
- assertthat 0.2.1
- babelgene 22.9
- backports 1.4.1
- base64enc 0.1-3
- base 3.6.3
- base 4.3.0
- basilisk.utils 1.12.1
- basilisk 1.12.1
- beachmat 2.16.0
- beachtest 1.0.0
- beeswarm 0.4.0
- bit64 4.0.5
- bit 4.0.5
- bitops 1.0-7
- blob 1.2.4
- bluster 1.10.0
- boot 1.3-24
- boot 1.3-28.1
- brew 1.0-8
- brio 1.1.3
- broom 1.0.5
- bslib 0.5.0
- caTools 1.18.2
- cachem 1.0.8
- callr 3.7.3
- celldex 1.10.1
- cellranger 1.1.0
- checkmate 2.2.0
- class 7.3-15
- class 7.3-22
- classInt 0.4-9
- cli 3.6.1
- clipr 0.8.0
- clisymbols 1.2.0
- cluster 2.1.0
- cluster 2.1.4
- clustree 0.5.0
- coda 0.19-3
- coda 0.19-4
- codetools 0.2-16
- codetools 0.2-19
- coin 1.4-2
- colorspace 2.1-0
- commonmark 1.9.0
- compiler 3.6.3
- compiler 4.3.0
- conflicted 1.2.0
- covr 3.6.2
- cowplot 1.1.1
- cpp11 0.4.4
- crayon 1.5.2
- credentials 1.3.2
- crosstalk 1.2.0
- curl 5.0.1
- cyclocomp 1.1.0
- data.table 1.14.8
- datasets 3.6.3
- datasets 4.3.0
- dbplyr 2.3.3
- debugme 1.1.0
- decor 1.0.2
- deldir 1.0-9
- dendextend 1.17.1
- densvis 1.10.2
- desc 1.4.2
- devtools 2.4.5
- diffobj 0.3.5
- digest 0.6.33
- dir.expiry 1.8.0
- doParallel 1.0.17
- dotCall64 1.0-2
- downlit 0.4.3
- dplyr 1.1.2
- dqrng 0.3.0
- dtplyr 1.3.1
- e1071 1.7-13
- edgeR 3.42.4
- ellipsis 0.3.2
- evaluate 0.21
- fansi 1.0.4
- farver 2.1.1
- fastDummies 1.7.3
- fastcluster 1.2.3
- fastmap 1.1.1
- fastmatch 1.1-3
- feather 0.3.5
- fgsea 1.26.0
- filelock 1.0.2
- findpython 1.0.8
- fitdistrplus 1.1-11
- foghorn 1.5.1
- fontawesome 0.5.1
- forcats 1.0.0
- foreach 1.5.2
- foreign 0.8-75
- foreign 0.8-84
- formatR 1.14
- fs 1.6.2
- futile.logger 1.4.3
- futile.options 1.0.1
- future.apply 1.11.0
- future 1.33.0
- gargle 1.5.1
- genefilter 1.82.1
- generics 0.1.3
- gert 1.9.2
- getopt 1.20.3
- ggalluvial 0.12.5
- ggbeeswarm 0.7.2
- ggforce 0.4.1
- ggplot2 3.4.2
- ggraph 2.1.0
- ggrastr 1.0.2
- ggrepel 0.9.3
- ggridges 0.5.4
- ggsci 3.0.0
- ggthemes 4.2.4
- gh 1.4.0
- git2r 0.32.0
- gitcreds 0.1.2
- glmGamPoi 1.12.2
- globals 0.16.2
- glue 1.6.2
- gmailr 2.0.0
- goftest 1.2-3
- googledrive 2.1.1
- googlesheets4 1.1.1
- gplots 3.1.3
- gprofiler2 0.2.2
- grDevices 3.6.3
- grDevices 4.3.0
- graphics 3.6.3
- graphics 4.3.0
- graphlayouts 1.0.0
- grid 3.6.3
- grid 4.3.0
- gridExtra 2.3
- gtable 0.3.3
- gtools 3.9.4
- haven 2.5.3
- here 1.0.1
- hexbin 1.28.3
- highr 0.10
- hms 1.1.3
- htmltools 0.5.5
- htmlwidgets 1.6.2
- httpuv 1.6.11
- httr2 0.2.3
- httr 1.4.6
- hunspell 3.0.2
- ica 1.0-3
- ids 1.0.1
- igraph 1.5.0
- igraphdata 1.0.1
- infercnv 1.16.0
- ini 0.3.1
- interactiveDisplayBase 1.38.0
- irlba 2.3.5.1
- isoband 0.2.7
- iterators 1.0.14
- jquerylib 0.1.4
- jsonlite 1.8.7
- knitr 1.43
- labeling 0.4.2
- lambda.r 1.2.4
- later 1.3.1
- lattice 0.20-40
- lattice 0.21-8
- lazyeval 0.2.2
- leiden 0.4.3
- libcoin 1.0-9
- lifecycle 1.0.3
- limma 3.56.2
- lintr 3.0.2
- listenv 0.9.0
- listviewer 3.0.0
- lmtest 0.9-40
- locfit 1.5-9.8
- lubridate 1.9.2
- magrittr 2.0.3
- maps 3.4.1
- maptools 1.1-7
- mathjaxr 1.6-0
- matrixStats 1.0.0
- memoise 2.0.1
- metapod 1.8.0
- methods 3.6.3
- methods 4.3.0
- mgcv 1.8-31
- mgcv 1.9-0
- mime 0.12
- miniUI 0.1.1.1
- mnormt 2.1.1
- mockery 0.4.3
- mockr 0.2.1
- modelr 0.1.11
- modeltools 0.2-23
- morebeach 1.0.0
- morebeachtests 1.0.0
- msigdbr 7.5.1
- multcomp 1.4-25
- multtest 2.56.0
- munsell 0.5.0
- mvtnorm 1.2-2
- mvtnormAPI 1.0-0
- nlme 3.1-144
- nlme 3.1-162
- nnet 7.3-13
- nnet 7.3-19
- numDeriv 2016.8-1.1
- openssl 2.0.6
- optparse 1.7.3
- org.testing.db 0.1
- palmerpenguins 0.1.1
- parallel 3.6.3
- parallel 4.3.0
- parallelDist 0.2.6
- parallelly 1.36.0
- parsedate 1.3.1
- patchwork 1.1.2
- pbapply 1.7-2
- pheatmap 1.0.12
- phyclust 0.1-33
- pillar 1.9.0
- pingr 2.0.2
- pkgbuild 1.4.2
- pkgconfig 2.0.3
- pkgdown 2.0.7
- pkgload 1.3.2.1
- plogr 0.2.0
- plotly 4.10.2
- plotlyGeoAssets 0.0.2
- plotrix 3.8-2
- plyr 1.8.8
- png 0.1-8
- polyclip 1.10-4
- praise 1.0.0
- prettydoc 0.4.1
- prettyunits 1.1.1
- processx 3.8.2
- profvis 0.3.8
- progress 1.2.2
- progressr 0.13.0
- promises 1.2.0.1
- proxy 0.4-27
- ps 1.7.5
- purrr 1.0.1
- qqconf 1.3.2
- quantreg 5.95
- ragg 1.2.5
- rappdirs 0.3.3
- rbibutils 2.2.13
- rcmdcheck 1.4.0
- readr 2.1.4
- readxl 1.4.3
- rematch2 2.1.2
- rematch 1.0.1
- remotes 2.4.2
- repr 1.1.6
- reprex 2.0.2
- reshape2 1.4.4
- reshape 0.8.9
- restfulr 0.0.15
- reticulate 1.30
- rex 1.2.1
- rgl 1.2.1
- rhdf5 2.44.0
- rhdf5filters 1.12.1
- rhub 1.1.2
- rjags 4-10
- rjags 4-14
- rjson 0.2.21
- rlang 1.1.1
- rmarkdown 2.23
- robustbase 0.99-0
- roxygen2 7.2.3
- rpart 4.1-15
- rpart 4.1.19
- rprojroot 2.0.3
- rstudioapi 0.15.0
- rsvd 1.0.5
- rtracklayer 1.60.0
- rversions 2.1.2
- rvest 1.0.3
- s2 1.1.4
- sandwich 3.0-2
- sass 0.4.6
- scDblFinder 1.14.0
- scSorter 0.0.2
- scales 1.2.1
- scater 1.28.0
- scattermore 1.2
- scran 1.28.1
- sctransform 0.3.5
- scuttle 1.10.1
- selectr 0.4-2
- sessioninfo 1.2.2
- shiny 1.7.4.1
- shinytest 1.5.3
- showimage 1.0.0
- sitmo 2.0.2
- sn 2.1.1
- snow 0.4-4
- son.of.basilisk 0.99.0
- sourcetools 0.1.7-1
- sp 2.0-0
- spam 2.9-1
- sparseMatrixStats 1.12.2
- spatial 7.3-11
- spatial 7.3-16
- spatstat.data 3.0-1
- spatstat.explore 3.2-1
- spatstat.geom 3.2-2
- spatstat.random 3.1-5
- spatstat.sparse 3.0-2
- spatstat.utils 3.0-3
- spelling 2.2.1
- splines 3.6.3
- splines 4.3.0
- statmod 1.5.0
- stats4 3.6.3
- stats4 4.3.0
- stats 3.6.3
- stats 4.3.0
- stringi 1.7.12
- stringr 1.5.0
- survival 3.1-8
- survival 3.5-5
- sva 3.48.0
- sys 3.4.2
- systemfonts 1.0.4
- tcltk 3.6.3
- tcltk 4.3.0
- tensor 1.5
- testRcppAttributePackage 1.0
- testRcppClass 0.1
- testRcppInterfaceExporter 0.1.0
- testRcppInterfaceUser 0.1.0
- testRcppModule 0.1
- testRcppPackage 0.1.0
- testthat 3.1.10
- textshaping 0.3.6
- tibble 3.2.1
- tidygraph 1.2.3
- tidyr 1.3.0
- tidyselect 1.2.0
- tidyverse 2.0.0
- timechange 0.2.0
- tinytex 0.45
- tools 3.6.3
- tools 4.3.0
- translations 3.6.3
- translations 4.3.0
- tweenr 2.0.2
- tzdb 0.4.0
- units 0.8-2
- urlchecker 1.0.1
- usethis 2.2.2
- utf8 1.2.3
- utils 3.6.3
- utils 4.3.0
- uuid 1.1-0
- uwot 0.1.16
- vctrs 0.6.3
- vdiffr 1.0.5
- vipor 0.4.5
- viridis 0.6.3
- viridisLite 0.4.2
- vroom 1.6.3
- waldo 0.5.1
- webdriver 1.0.6
- webfakes 1.2.0
- webshot 0.5.5
- webutils 1.1
- whisker 0.4.1
- whoami 1.3.0
- withr 2.5.0
- wk 0.7.3
- xfun 0.39
- xgboost 1.7.5.1
- xml2 1.3.5
- xmlparsedata 1.0.5
- xopen 1.0.0
- xtable 1.8-4
- yaml 2.3.7
- zip 2.3.0
- zlibbioc 1.46.0
- zoo 1.8-12
- github.com/evanw/esbuild v0.0.0-20220511215310-7abb7d8496d4
- golang.org/x/sys v0.0.0-20210908233432-aa78b53d3365
- stdlib 1.18.1
- bootstrap-accessibility-plugin 1.0.6
- bootstrap-colorpicker 3.4.0
- bootstrap-sass 3.4.1
- bootstrap 4.6.0
- bootstrap 5.2.2
- bootswatch 3.4.1
- bootswatch 4.6.0
- bootswatch 5.2.2
- casperjs 1.1.0-beta5
- core-js 2.5.1
- react-json-view 1.15.2
- Babel 2.6.0
- Pillow 7.0.0
- PyYAML 5.3.1
- Pygments 2.3.1
- certifi 2019.11.28
- chardet 3.0.4
- debtcollector 2.0.0
- docutils 0.16
- idna 2.8
- iso8601 0.1.12
- monotonic 1.5
- msgpack 0.6.2
- netaddr 0.7.19
- netifaces 0.10.4
- numpy 1.17.4
- olefile 0.46
- oslo.config 8.0.2
- oslo.context 3.0.2
- oslo.i18n 4.0.1
- oslo.log 4.1.1
- oslo.serialization 3.1.1
- oslo.utils 4.1.1
- pbr 5.4.5
- pip 20.0.2
- pyinotify 0.9.6
- pyparsing 2.4.6
- python-dateutil 2.7.3
- python-novnc 1.0.0
- pytz 2019.3
- requests 2.22.0
- rfc3986 1.3.2
- roman 2.0.0
- setuptools 45.2.0
- six 1.14.0
- stevedore 1.32.0
- supervisor 4.1.0
- ts 0.5.1
- urllib3 1.25.8
- websockify 0.9.0
- wheel 0.34.2
- wrapt 1.11.2