bixbeta/czid : v3

updated to https://github.com/chanzuckerberg/czid-cli/releases/tag/v6.0.0

Latest release: almost 2 years ago - 89 downloads - 421 dependencies

JSON

Dependencies

@PKGNAME@ @VERSION@
AnnotationDbi 1.52.0
BH 1.75.0-0
Biobase 2.50.0
BiocGenerics 0.36.0
BiocManager 1.30.10
BiocParallel 1.24.1
BiocVersion 3.12.0
Biostrings 2.58.0
DBI 1.1.1
DDRTree 0.1.5
DESeq2 1.30.0
DT 0.17
DelayedArray 0.16.1
FNN 1.1.3
GenomeInfoDb 1.26.2
GenomeInfoDbData 1.2.4
GenomicRanges 1.42.0
HSMMSingleCell 1.10.0
IRanges 2.24.1
KernSmooth 2.23-17
MASS 7.3-53
MAST 1.16.0
Matrix 1.2-18
MatrixGenerics 1.2.0
MatrixModels 0.4-1
R.methodsS3 1.8.1
R.oo 1.24.0
R.utils 2.10.1
R6 2.5.0
RANN 2.6.1
RBGL 1.66.0
RColorBrewer 1.1-2
RCurl 1.98-1.2
ROCR 1.0-11
RSQLite 2.2.3
RSpectra 0.16-0
RUnit 0.4.32
Rcpp 1.0.6
RcppAnnoy 0.0.18
RcppArmadillo 0.10.1.2.2
RcppEigen 0.3.3.9.1
RcppGSL 0.3.8
RcppGSLExample 0.0.3
RcppProgress 0.4.2
RcppProgressArmadillo 0.2
RcppProgressETA 0.1
RcppProgressExample 0.2
RcppZiggurat 0.1.6
Rdpack 2.1
RdpackTester 1.0
Rfast2 0.0.8
Rfast 2.0.1
Rtsne 0.15
S4Vectors 0.28.1
Seurat 4.0.0
SeuratDisk 0.0.0.9018
SeuratObject 4.0.0
SingleCellExperiment 1.12.0
SparseM 1.78
SummarizedExperiment 1.20.0
TFisher 0.2.0
TH.data 1.0-10
VGAM 1.1-5
XML 3.99-0.5
XVector 0.30.0
abind 1.4-5
annotate 1.68.0
ape 5.4-1
askpass 1.1
assertthat 0.2.1
base64enc 0.1-3
base 4.0.3
biocViews 1.58.1
bit64 4.0.5
bit 4.0.4
bitops 1.0-6
blob 1.2.1
boot 1.3-25
brio 1.1.1
bslib 0.2.4
caTools 1.18.1
cachem 1.0.1
cachem 1.0.3
callr 3.5.1
class 7.3-17
cli 2.2.0
cli 2.3.0
cluster 2.1.0
codetools 0.2-16
colorspace 2.0-0
combinat 0.0-8
commonmark 1.7
compiler 4.0.3
conquer 1.0.2
cowplot 1.1.1
cpp11 0.2.6
crayon 1.3.4
crayon 1.4.1
crosstalk 1.1.1
curl 4.3
d3r 0.9.1
data.table 1.13.6
datasets 4.0.3
deldir 0.2-9
densityClust 0.3
desc 1.2.0
diffobj 0.3.3
digest 0.6.27
docopt 0.7.1
dplyr 1.0.3
dplyr 1.0.4
dqrng 0.2.1
ellipsis 0.3.1
enrichR 2.1
evaluate 0.14
fansi 0.4.2
farver 2.0.3
fastICA 1.2-2
fastmap 1.1.0
fitdistrplus 1.1-3
foreign 0.8-80
formatR 1.7
fs 1.5.0
futile.logger 1.4.3
futile.options 1.0.1
future.apply 1.7.0
future 1.21.0
gbRd 0.4-11
genefilter 1.72.1
geneplotter 1.68.0
generics 0.1.0
ggplot2 3.3.3
ggrepel 0.9.1
ggridges 0.5.3
globals 0.14.0
glue 1.4.2
goftest 1.2-2
gplots 3.1.1
grDevices 4.0.3
graph 1.68.0
graphics 4.0.3
grid 4.0.3
gridExtra 2.3
gtable 0.3.0
gtools 3.8.2
hdf5r 1.3.3
highr 0.8
hms 1.0.0
htmltools 0.5.1.1
htmlwidgets 1.5.3
httpuv 1.5.5
httr 1.4.2
ica 1.0-2
igraph 1.2.6
irlba 2.3.3
isoband 0.2.3
jquerylib 0.1.3
jsonlite 1.7.2
kernlab 0.9-29
knitr 1.31
labeling 0.4.2
lambda.r 1.2.4
later 1.1.0.1
lattice 0.20-41
lazyeval 0.2.2
leiden 0.3.7
lifecycle 0.2.0
limma 3.46.0
listenv 0.8.0
littler 0.3.12
lmtest 0.9-38
locfit 1.5-9.4
magrittr 2.0.1
markdown 1.1
mathjaxr 1.0-1
matrixStats 0.58.0
memoise 2.0.0
metap 1.4
methods 4.0.3
mgcv 1.8-33
mime 0.9
miniUI 0.1.1.1
mixtools 1.2.0
mnormt 2.0.2
monocle 2.18.0
multcomp 1.4-15
multtest 2.46.0
munsell 0.5.0
mutoss 0.1-12
mvtnorm 1.1-1
mvtnormAPI 1.0-0
nlme 3.1-149
nnet 7.3-14
numDeriv 2016.8-1.1
openssl 1.4.3
org.testing.db 0.1
parallel 4.0.3
parallelly 1.23.0
patchwork 1.1.1
pavian 1.0.0
pbapply 1.4-3
pheatmap 1.0.12
pillar 1.4.7
pkgbuild 1.2.0
pkgconfig 2.0.3
pkgload 1.1.0
plogr 0.2.0
plotly 4.9.3
plotrix 3.8-1
plyr 1.8.6
png 0.1-7
polyclip 1.10-0
praise 1.0.0
prettyunits 1.1.1
processx 3.4.5
progress 1.2.2
promises 1.1.1
proxy 0.4-24
ps 1.5.0
purrr 0.3.4
qlcMatrix 0.9.7
quantreg 5.83
rappdirs 0.3.2
rappdirs 0.3.3
rbibutils 2.0
rematch2 2.1.2
remotes 2.2.0
reshape2 1.4.4
reticulate 1.18
rhandsontable 0.3.7
rjson 0.2.20
rlang 0.4.10
rmarkdown 2.6
rpart 4.1-15
rprojroot 2.0.2
rstudioapi 0.13
sandwich 3.0-0
sankeyD3 0.3.2
sass 0.3.1
scales 1.1.1
scattermore 0.7
sctransform 0.3.2
segmented 1.3-1
shiny 1.6.0
shinyFileTree 0.0.0.9000
shinyWidgets 0.5.7
shinydashboard 0.7.1
shinyjs 2.0.0
sitmo 2.0.1
slam 0.1-48
sn 1.6-2
snow 0.4-3
sourcetools 0.1.7
sparsesvd 0.2
spatial 7.3-12
spatstat.data 1.7-0
spatstat.utils 2.0-0
spatstat 1.64-1
splines 4.0.3
stats4 4.0.3
stats 4.0.3
stringi 1.5.3
stringr 1.4.0
survival 3.2-7
sys 3.4
tcltk 4.0.3
tensor 1.5
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
testthat 3.0.1
tibble 3.0.6
tidyr 1.1.2
tidyselect 1.1.0
tinytex 0.29
tmvnsim 1.0-2
tools 4.0.3
translations 4.0.3
utf8 1.1.4
utils 4.0.3
uwot 0.1.10
vctrs 0.3.6
viridis 0.5.1
viridisLite 0.3.0
waldo 0.2.3
withr 2.4.1
xfun 0.20
xtable 1.8-4
yaml 2.2.1
zlibbioc 1.36.0
zoo 1.8-8

bash 5.0.17
python 3.8.10

github.com/VividCortex/ewma v1.1.1
github.com/aws/aws-sdk-go-v2/credentials v1.1.1
github.com/aws/aws-sdk-go-v2/service/internal/accept-encoding v1.0.2
github.com/aws/aws-sdk-go-v2/service/internal/presigned-url v1.0.3
github.com/aws/aws-sdk-go-v2/service/internal/s3shared v1.1.1
github.com/aws/aws-sdk-go-v2/service/s3 v1.2.1
github.com/aws/aws-sdk-go-v2 v1.2.1
github.com/aws/smithy-go v1.2.0
github.com/chanzuckerberg/aws-sdk-go-v2/feature/s3/manager v1.1.0
github.com/chanzuckerberg/czid-cli (devel)
github.com/cheggaaa/pb/v3 v3.0.6
github.com/fatih/color v1.7.0
github.com/fsnotify/fsnotify v1.4.7
github.com/hashicorp/hcl v1.0.0
github.com/jmespath/go-jmespath v0.4.0
github.com/magiconair/properties v1.8.1
github.com/mattn/go-colorable v0.1.2
github.com/mattn/go-isatty v0.0.12
github.com/mattn/go-runewidth v0.0.7
github.com/mitchellh/mapstructure v1.1.2
github.com/pelletier/go-toml v1.2.0
github.com/spf13/afero v1.1.2
github.com/spf13/cast v1.3.0
github.com/spf13/cobra v1.1.3
github.com/spf13/jwalterweatherman v1.0.0
github.com/spf13/pflag v1.0.5
github.com/spf13/viper v1.7.1
github.com/subosito/gotenv v1.2.0
golang.org/x/sys v0.0.0-20200116001909-b77594299b42
golang.org/x/text v0.3.2
gopkg.in/ini.v1 v1.51.0
gopkg.in/yaml.v2 v2.4.0
stdlib 1.16.3

US_export_policy:US_export_policy *
charsets:charsets *
cldrdata:cldrdata *
com.ibm.icu.base:base 4.4
com.ibm.icu.charset:icu4j-charset 60.2
com.ibm.icu.localespi:icu4j-localespi 60.2
com.ibm.icu:icu4j 60.2
com.ibm.icu:icu 4.4
com.sun:jce 1.8.0_312
com.sun:sunec 1.8.0_312
com.sun:sunjce_provider 1.8.0_312
com.sun:sunpkcs11 1.8.0_312
dnsns:dnsns *
dt:dt *
icedtea-sound:icedtea-sound *
jaccess:jaccess *
jconsole:jconsole *
jfr:jfr 1.8.0_312
jsse:jsse 1.8.0_312
local_policy:local_policy *
localedata:localedata *
management-agent:management-agent *
nashorn:nashorn 1.8.0_312-8u312-b07-0ubuntu1~20.04-b07
org.GNOME.Accessibility.AtkWrapper:java-atk-wrapper *
org.debian.security.UpdateCertificates:ca-certificates-java *
resources:resources 1.8.0_312
rt:rt 1.8.0_312
sa-jdi:sa-jdi *
tools:tools *
zipfs:zipfs 1.8.0_312

bootstrap-accessibility-plugin 1.0.6
bootstrap-colorpicker 3.2.0
bootstrap-sass 3.4.1
bootstrap 4.5.3
bootswatch 3.4.1
bootswatch 4.5.3
d3-jetpack 2.0.9
d3-sankey 0.4.0
jquery 3.5.1
mathjax 3.0.5
popper.js 1.16.1

Jinja2 2.11.3
Markdown 3.3.3
MarkupSafe 1.1.1
Pillow 8.1.0
PyGObject 3.36.0
PyYAML 5.3.1
Pygments 2.3.1
certifi 2019.11.28
chardet 3.0.4
click 7.1.2
coloredlogs 15.0
colormath 3.0.0
cutadapt 3.2
cycler 0.10.0
dbus-python 1.2.16
decorator 4.4.2
distro-info 0.23ubuntu1
dnaio 0.5.0
future 0.18.2
humanfriendly 9.1
idna 2.8
joblib 1.0.0
kiwisolver 1.3.1
llvmlite 0.35.0
lzstring 1.0.4
matplotlib 3.3.4
multiqc 1.9
mypy 0.770
networkx 2.5
numba 0.52.0
numpy 1.19.5
pip 20.0.2
pynndescent 0.5.1
pyparsing 2.4.7
python-apt 2.0.0 ubuntu0.20.4.6
python-dateutil 2.8.1
python-debian 0.1.36ubuntu1
requests-unixsocket 0.2.0
requests 2.22.0
scikit-learn 0.24.1
scipy 1.6.0
setuptools 45.2.0
simplejson 3.17.2
six 1.14.0
spectra 0.0.11
threadpoolctl 2.1.0
umap-learn 0.5.0
unattended-upgrades 0.1
urllib3 1.25.8
wheel 0.34.2
xopen 1.0.1

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bixbeta/czid : v3

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