bixbeta/cluster_profiler : v1

Latest release: over 3 years ago - 38 downloads - 1,038 dependencies

JSON

Dependencies

@PKGNAME@ @VERSION@
AnnotationDbi 1.52.0
BH 1.75.0-0
Biobase 2.50.0
BiocGenerics 0.36.0
BiocManager 1.30.10
BiocParallel 1.24.1
BiocVersion 3.12.0
Biostrings 2.58.0
DBI 1.1.1
DDRTree 0.1.5
DESeq2 1.30.0
DO.db 2.9
DOSE 3.16.0
DT 0.22
DelayedArray 0.16.1
FNN 1.1.3
GGally 2.1.2
GO.db 3.12.1
GOSemSim 2.16.1
GSEABase 1.52.1
GenomeInfoDb 1.26.2
GenomeInfoDbData 1.2.4
GenomicRanges 1.42.0
HSMMSingleCell 1.10.0
IRanges 2.24.1
KernSmooth 2.23-17
MASS 7.3-53
MAST 1.16.0
Matrix 1.2-18
MatrixGenerics 1.2.0
MatrixModels 0.4-1
R.methodsS3 1.8.1
R.oo 1.24.0
R.utils 2.10.1
R6 2.5.0
RANN 2.6.1
RBGL 1.66.0
RColorBrewer 1.1-2
RCurl 1.98-1.2
ROCR 1.0-11
RSQLite 2.2.3
RSpectra 0.16-0
RUnit 0.4.32
Rcpp 1.0.6
RcppAnnoy 0.0.18
RcppArmadillo 0.10.1.2.2
RcppEigen 0.3.3.9.1
RcppGSL 0.3.8
RcppGSLExample 0.0.3
RcppProgress 0.4.2
RcppProgressArmadillo 0.2
RcppProgressETA 0.1
RcppProgressExample 0.2
RcppZiggurat 0.1.6
Rdpack 2.1
RdpackTester 1.0
Rfast2 0.0.8
Rfast 2.0.1
Rtsne 0.15
S4Vectors 0.28.1
SQUAREM 2021.1
Seurat 4.0.0
SeuratDisk 0.0.0.9018
SeuratObject 4.0.0
SingleCellExperiment 1.12.0
SparseM 1.78
SummarizedExperiment 1.20.0
TFisher 0.2.0
TH.data 1.0-10
UCell 1.3.1
UpSetR 1.4.0
VGAM 1.1-5
XML 3.99-0.5
XVector 0.30.0
abind 1.4-5
annotate 1.68.0
anytime 0.3.9
ape 5.4-1
ashr 2.2-54
askpass 1.1
assertthat 0.2.1
backports 1.4.1
base64enc 0.1-3
base 4.0.3
biocViews 1.58.1
bit64 4.0.5
bit 4.0.4
bitops 1.0-6
blob 1.2.1
boot 1.3-25
brew 1.0-7
brio 1.1.1
broom 1.0.1
bslib 0.2.4
bslib 0.4.0
caTools 1.18.1
cachem 1.0.1
cachem 1.0.6
callr 3.5.1
callr 3.7.2
cellranger 1.1.0
class 7.3-17
cli 2.2.0
cli 3.4.0
clipr 0.8.0
cluster 2.1.0
clusterProfiler 3.18.1
codetools 0.2-16
colorspace 2.0-0
combinat 0.0-8
commonmark 1.7
compiler 4.0.3
conquer 1.0.2
cowplot 1.1.1
cpp11 0.2.6
cpp11 0.4.2
crayon 1.3.4
crayon 1.5.1
credentials 1.3.2
crosstalk 1.1.1
curl 4.3
d3heatmap 0.9.0
d3r 1.0.0
data.table 1.13.6
datasets 4.0.3
dbplyr 2.2.1
deldir 0.2-9
dendextend 1.16.0
densityClust 0.3
desc 1.2.0
desc 1.4.2
diffobj 0.3.3
diffobj 0.3.5
digest 0.6.27
docopt 0.7.1
downlit 0.4.2
downloader 0.4
dplyr 1.0.10
dplyr 1.0.3
dqrng 0.2.1
dtplyr 1.2.2
edgeR 3.32.1
ellipsis 0.3.1
ellipsis 0.3.2
enrichR 2.1
enrichplot 1.10.2
etrunct 0.1
evaluate 0.14
evaluate 0.16
fansi 0.4.2
farver 2.0.3
fastICA 1.2-2
fastmap 1.1.0
fastmatch 1.1-3
fgsea 1.16.0
fitdistrplus 1.1-3
fontawesome 0.3.0
forcats 0.5.2
foreign 0.8-80
formatR 1.7
fs 1.5.0
fs 1.5.2
futile.logger 1.4.3
futile.options 1.0.1
future.apply 1.7.0
future 1.21.0
gargle 1.2.1
gbRd 0.4-11
genefilter 1.72.1
geneplotter 1.68.0
generics 0.1.0
gert 1.9.0
ggdendro 0.1.23
ggforce 0.3.4
ggfun 0.0.7
ggplot2 3.3.3
ggplot2 3.3.6
ggraph 2.0.6
ggrepel 0.9.1
ggridges 0.5.3
gh 1.3.1
gitcreds 0.1.2
globals 0.14.0
glue 1.4.2
goftest 1.2-2
googledrive 2.0.0
googlesheets4 1.0.1
gplots 3.1.1
grDevices 4.0.3
graph 1.68.0
graphics 4.0.3
graphlayouts 0.8.1
grid 4.0.3
gridExtra 2.3
gtable 0.3.0
gtools 3.8.2
harmony 0.1.0
haven 2.5.1
hdf5r 1.3.3
highr 0.9
hms 1.0.0
hms 1.1.2
htmltools 0.5.1.1
htmltools 0.5.3
htmlwidgets 1.5.3
htmlwidgets 1.5.4
httpuv 1.5.5
httr 1.4.2
ica 1.0-2
ids 1.0.1
igraph 1.2.6
ini 0.3.1
invgamma 1.1
irlba 2.3.3
isoband 0.2.3
jquerylib 0.1.3
jsonlite 1.7.2
kernlab 0.9-29
knitr 1.40
labeling 0.4.2
lambda.r 1.2.4
later 1.1.0.1
lattice 0.20-41
lazyeval 0.2.2
leaflet.providers 1.9.0
leaflet 2.1.1
leiden 0.3.7
lifecycle 0.2.0
lifecycle 1.0.2
limma 3.46.0
listenv 0.8.0
littler 0.3.12
lmtest 0.9-38
locfit 1.5-9.4
logger.tester 0.1
logger 0.2.2
lubridate 1.8.0
magrittr 2.0.1
markdown 1.1
mathjaxr 1.0-1
matrixStats 0.58.0
memoise 2.0.0
memoise 2.0.1
metap 1.4
methods 4.0.3
mgcv 1.8-33
mime 0.9
miniUI 0.1.1.1
mixsqp 0.3-43
mixtools 1.2.0
mnormt 2.0.2
modelr 0.1.9
monocle 2.18.0
multcomp 1.4-15
multtest 2.46.0
munsell 0.5.0
mutoss 0.1-12
mvtnorm 1.1-1
mvtnormAPI 1.0-0
nlme 3.1-149
nnet 7.3-14
numDeriv 2016.8-1.1
openssl 1.4.3
openssl 2.0.3
org.testing.db 0.1
parallel 4.0.3
parallelly 1.23.0
patchwork 1.1.1
pavian 1.0.0
pbapply 1.4-3
pheatmap 1.0.12
pillar 1.4.7
pillar 1.8.1
pkgbuild 1.2.0
pkgbuild 1.3.1
pkgconfig 2.0.3
pkgload 1.1.0
pkgload 1.3.0
plogr 0.2.0
plotly 4.9.3
plotrix 3.8-1
plyr 1.8.6
png 0.1-7
polyclip 1.10-0
praise 1.0.0
prettyunits 1.1.1
processx 3.4.5
processx 3.7.0
profvis 0.3.7
progress 1.2.2
promises 1.1.1
proxy 0.4-24
ps 1.5.0
purrr 0.3.4
qlcMatrix 0.9.7
quantreg 5.83
qvalue 2.22.0
rappdirs 0.3.2
rappdirs 0.3.3
raster 3.5-29
rbibutils 2.0
rcmdcheck 1.4.0
readr 2.1.2
readxl 1.4.1
rematch2 2.1.2
rematch 1.0.1
remotes 2.2.0
remotes 2.4.2
reprex 2.0.2
reshape2 1.4.4
reshape 0.8.9
reticulate 1.18
rhandsontable 0.3.8
rjson 0.2.20
rlang 0.4.10
rlang 1.0.5
rmarkdown 2.16
roxygen2 7.2.1
rpart 4.1-15
rprojroot 2.0.2
rstudioapi 0.13
rvcheck 0.1.8
rversions 2.1.2
rvest 1.0.3
sandwich 3.0-0
sankeyD3 0.3.2
sass 0.3.1
sass 0.4.2
scales 1.1.1
scattermore 0.7
scatterpie 0.1.8
sctransform 0.3.2
segmented 1.3-1
selectr 0.4-2
sessioninfo 1.2.2
shadowtext 0.1.2
shiny.fluent 0.2.1
shiny.i18n 0.2.0
shiny.react 0.2.3
shiny.router 0.2.3
shiny 1.6.0
shinyFileTree 0.0.0.9000
shinyWidgets 0.7.3
shinybusy 0.3.0
shinycssloaders 1.0.0
shinydashboard 0.7.2
shinyjs 2.1.0
shinythemes 1.2.0
singscore 1.15.5
sitmo 2.0.1
slam 0.1-48
sn 1.6-2
snow 0.4-3
sourcetools 0.1.7
sp 1.5-0
sparsesvd 0.2
spatial 7.3-12
spatstat.data 1.7-0
spatstat.utils 2.0-0
spatstat 1.64-1
splines 4.0.3
stats4 4.0.3
stats 4.0.3
stringi 1.5.3
stringr 1.4.0
survival 3.2-7
sys 3.4
tcltk 4.0.3
tensor 1.5
terra 1.6-17
testRcppClass 0.1
testRcppInterfaceExporter 0.1.0
testRcppInterfaceUser 0.1.0
testRcppModule 0.1
testRcppPackage 0.1.0
testthat 3.0.1
testthat 3.1.4
tibble 3.0.6
tibble 3.1.8
tidygraph 1.2.2
tidyr 1.1.2
tidyr 1.2.1
tidyselect 1.1.0
tidyselect 1.1.2
tidyverse 1.3.2
tinytex 0.41
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truncnorm 1.0-8
tweenr 2.0.2
tzdb 0.3.0
urlchecker 1.0.1
usethis 2.1.6
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utils 4.0.3
uuid 1.1-0
uwot 0.1.10
vctrs 0.3.6
vctrs 0.4.1
viridis 0.5.1
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vroom 1.5.7
waldo 0.2.3
waldo 0.4.0
webshot 0.5.3
whisker 0.4
withr 2.4.1
withr 2.5.0
xfun 0.33
xml2 1.3.3
xopen 1.0.0
xtable 1.8-4
yaml 2.2.1
yulab.utils 0.0.5
zip 2.2.1
zlibbioc 1.36.0
zoo 1.8-8

bash 5.0.16
node 12.22.6
python 3.8.5

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charsets:charsets *
cldrdata:cldrdata *
com.ibm.icu.base:base 4.4
com.ibm.icu.charset:icu4j-charset 60.2
com.ibm.icu.localespi:icu4j-localespi 60.2
com.ibm.icu:icu4j 60.2
com.ibm.icu:icu 4.4
com.sun:jce 1.8.0_275
com.sun:sunec 1.8.0_275
com.sun:sunjce_provider 1.8.0_275
com.sun:sunpkcs11 1.8.0_275
dnsns:dnsns *
dt:dt *
icedtea-sound:icedtea-sound *
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jfr:jfr 1.8.0_275
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resources:resources 1.8.0_275
rt:rt 1.8.0_275
sa-jdi:sa-jdi *
tools:tools *
zipfs:zipfs 1.8.0_275

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path-parse 1.0.7
path-to-regexp 0.1.7
pause 0.1.0
performance-now 2.1.0
pify 3.0.0
pinkyswear 2.2.3
popper.js 1.16.1
prepend-http 1.0.4
process-nextick-args 2.0.0
promise-inflight 1.0.1
promise-retry 1.1.1
promzard 0.3.0
proto-list 1.2.4
protoduck 5.0.1
proxy-addr 2.0.6
prr 1.0.1
pseudomap 1.0.2
psl 1.1.29
pump 2.0.1
pump 3.0.0
pumpify 1.5.1
punycode 1.4.1
punycode 2.1.1
q 1.5.1
qrcode-terminal 0.12.0
qs 6.10.1
qs 6.5.2
qs 6.7.0
query-string 6.8.2
querystringify 2.2.0
qw 1.0.1
range-parser 1.2.1
raw-body 2.4.0
rc 1.2.8
read-cmd-shim 1.0.5
read-installed 4.0.3
read-package-json 2.1.1
read-package-tree 5.3.1
read 1.0.7
readable-stream 1.1.14
readable-stream 2.3.6
readable-stream 3.6.0
readdir-scoped-modules 1.1.0
registry-auth-token 3.4.0
registry-url 3.1.0
request 2.88.0
require-directory 2.1.1
require-main-filename 2.0.0
requires-port 1.0.0
resolve-from 4.0.0
resolve 1.10.0
retry 0.10.1
retry 0.12.0
rfdc 1.3.0
rimraf 2.7.1
run-queue 1.0.3
safe-buffer 5.1.2
safe-buffer 5.2.0
safe-buffer 5.2.1
safer-buffer 2.1.2
semver-diff 2.1.0
semver 5.7.1
send 0.17.1
serve-static 1.14.1
set-blocking 2.0.0
setprototypeof 1.1.1
sha 3.0.0
shebang-command 1.2.0
shebang-regex 1.0.0
shiny-server-client 1.2.0
shiny-server 1.5.17
side-channel 1.0.4
signal-exit 3.0.2
slide 1.1.6
smart-buffer 4.1.0
sockjs-client 1.5.2
sockjs 0.3.21
socks-proxy-agent 4.0.2
socks 2.3.3
sorted-object 2.0.1
sorted-union-stream 2.1.3
source-map 0.6.1
spdx-correct 3.0.0
spdx-exceptions 2.1.0
spdx-expression-parse 3.0.0
spdx-license-ids 3.0.5
split-on-first 1.1.0
split 1.0.1
sprintf-js 1.1.2
sshpk 1.14.2
ssri 6.0.2
stable 0.1.8
statuses 1.5.0
stream-each 1.2.2
stream-iterate 1.2.0
stream-shift 1.0.0
streamroller 2.2.4
strict-uri-encode 2.0.0
string-width 1.0.2
string-width 2.1.1
string-width 3.1.0
string_decoder 0.10.31
string_decoder 1.1.1
string_decoder 1.3.0
stringify-package 1.0.1
strip-ansi 3.0.1
strip-ansi 4.0.0
strip-ansi 5.2.0
strip-eof 1.0.0
strip-json-comments 2.0.1
supports-color 5.4.0
tar 4.4.19
term-size 1.2.0
text-table 0.2.0
through2 2.0.3
through 2.3.8
timed-out 4.0.1
tiny-relative-date 1.3.0
toidentifier 1.0.0
tough-cookie 2.4.3
tunnel-agent 0.6.0
tweetnacl 0.14.5
type-is 1.6.18
typedarray 0.0.6
uglify-js 3.13.6
uid-number 0.0.6
umask 1.1.0
underscore 1.13.1
unique-filename 1.1.1
unique-slug 2.0.0
unique-string 1.0.0
universalify 0.1.2
unpipe 1.0.0
unzip-response 2.0.1
update-notifier 2.5.0
uri-js 4.4.0
url-parse-lax 1.0.0
url-parse 1.5.3
util-deprecate 1.0.2
util-extend 1.0.3
util-promisify 2.1.0
utils-merge 1.0.1
uuid 3.3.3
uuid 3.4.0
validate-npm-package-license 3.0.4
validate-npm-package-name 3.0.0
vary 1.1.2
verror 1.10.0
wcwidth 1.0.1
websocket-driver 0.7.4
websocket-extensions 0.1.4
which-module 2.0.0
which 1.3.1
wide-align 1.1.2
widest-line 2.0.1
wordwrap 0.0.3
wordwrap 1.0.0
worker-farm 1.7.0
wrap-ansi 5.1.0
wrappy 1.0.2
write-file-atomic 2.4.3
xdg-basedir 3.0.0
xtend 4.0.1
y18n 4.0.1
yallist 2.1.2
yallist 3.0.3
yallist 3.1.1
yargs-parser 15.0.1
yargs 14.2.3

Jinja2 2.11.3
Markdown 3.3.3
MarkupSafe 1.1.1
Pillow 8.1.0
PyGObject 3.36.0
PyYAML 5.3.1
Pygments 2.3.1
certifi 2019.11.28
chardet 3.0.4
click 7.1.2
coloredlogs 15.0
colormath 3.0.0
cutadapt 3.2
cycler 0.10.0
dbus-python 1.2.16
decorator 4.4.2
distro-info 0.23ubuntu1
dnaio 0.5.0
future 0.18.2
humanfriendly 9.1
idna 2.8
joblib 1.0.0
kiwisolver 1.3.1
llvmlite 0.35.0
lzstring 1.0.4
matplotlib 3.3.4
multiqc 1.9
mypy 0.770
networkx 2.5
numba 0.52.0
numpy 1.19.5
pip 20.0.2
pynndescent 0.5.1
pyparsing 2.4.7
python-apt 2.0.0 ubuntu0.20.4.4
python-dateutil 2.8.1
python-debian 0.1.36ubuntu1
requests-unixsocket 0.2.0
requests 2.22.0
scikit-learn 0.24.1
scipy 1.6.0
setuptools 45.2.0
simplejson 3.17.2
six 1.14.0
spectra 0.0.11
threadpoolctl 2.1.0
umap-learn 0.5.0
unattended-upgrades 0.1
urllib3 1.25.8
wheel 0.34.2
xopen 1.0.1

ecosyste.ms

Data

Tools

Indexes

Applications

Experiments

Docker

bixbeta/cluster_profiler : v1

Dependencies