bioxfu/ddngs : latest

Latest release: about 3 years ago - 44 downloads - 1,055 dependencies

JSON

Dependencies

ubuntu/adduser 3.118ubuntu5
ubuntu/alsa-topology-conf 1.2.5.1-2
ubuntu/alsa-ucm-conf 1.2.6.3-1ubuntu1.4
ubuntu/amap-align 2.2 git20080214.600fc29 dfsg-2
ubuntu/apache2-bin 2.4.52-1ubuntu4.4
ubuntu/apt 2.4.8
ubuntu/at-spi2-core 2.44.0-3
ubuntu/base-files 12ubuntu4.2
ubuntu/base-passwd 3.5.52build1
ubuntu/bash 5.1-6ubuntu1
ubuntu/bedtools 2.30.0 dfsg-2ubuntu0.1
ubuntu/bioperl-run 1.7.3-8
ubuntu/bioperl 1.7.8-1
ubuntu/blends-common 0.7.4ubuntu1
ubuntu/bowtie 1.3.1-1
ubuntu/bsdutils 1:2.37.2-4ubuntu3
ubuntu/bwa 0.7.17-6
ubuntu/bzip2 1.0.8-5build1
ubuntu/ca-certificates-java 20190909ubuntu1.1
ubuntu/ca-certificates 20211016ubuntu0.22.04.1
ubuntu/clustalo 1.2.4-7
ubuntu/clustalw 2.1 lgpl-7
ubuntu/coreutils 8.32-4.1ubuntu1
ubuntu/dash 0.5.11 git20210903 057cd650a4ed-3build1
ubuntu/dbus-user-session 1.12.20-2ubuntu4.1
ubuntu/dbus 1.12.20-2ubuntu4.1
ubuntu/dconf-gsettings-backend 0.40.0-3
ubuntu/dconf-service 0.40.0-3
ubuntu/debconf 1.5.79ubuntu1
ubuntu/debianutils 5.5-1ubuntu2
ubuntu/default-jdk-headless 2:1.11-72build2
ubuntu/default-jre-headless 2:1.11-72build2
ubuntu/dialign-tx-data 1.0.2-14
ubuntu/dialign-tx 1.0.2-14
ubuntu/dialign 2.2.1-11
ubuntu/diffutils 1:3.8-0ubuntu2
ubuntu/dmsetup 2:1.02.175-2.1ubuntu4
ubuntu/dpkg 1.21.1ubuntu2.1
ubuntu/e2fsprogs 1.46.5-2ubuntu1.1
ubuntu/emboss-data 6.6.0 dfsg-11ubuntu1
ubuntu/emboss-lib 6.6.0 dfsg-11ubuntu1
ubuntu/emboss 6.6.0 dfsg-11ubuntu1
ubuntu/exonerate 2.4.0-5
ubuntu/file 1:5.41-3
ubuntu/findutils 4.8.0-1ubuntu3
ubuntu/fontconfig-config 2.13.1-4.2ubuntu5
ubuntu/fontconfig 2.13.1-4.2ubuntu5
ubuntu/fonts-dejavu-core 2.37-2build1
ubuntu/fonts-dejavu-extra 2.37-2build1
ubuntu/fonts-droid-fallback 1:6.0.1r16-1.1build1
ubuntu/fonts-lato 2.0-2.1
ubuntu/fonts-liberation 1:1.07.4-11
ubuntu/fonts-noto-mono 20201225-1build1
ubuntu/fonts-urw-base35 20200910-1
ubuntu/fsa 1.15.9 dfsg-6
ubuntu/gawk 1:5.1.0-1build3
ubuntu/gcc-12-base 12.1.0-2ubuntu1~22.04
ubuntu/ghostscript 9.55.0~dfsg1-0ubuntu5.1
ubuntu/gir1.2-glib-2.0 1.72.0-1
ubuntu/gpgv 2.2.27-3ubuntu2.1
ubuntu/graphviz 2.42.2-6
ubuntu/grep 3.7-1build1
ubuntu/gsettings-desktop-schemas 42.0-1ubuntu1
ubuntu/gzip 1.10-4ubuntu4.1
ubuntu/hmmer 3.3.2 dfsg-1
ubuntu/hostname 3.23ubuntu2
ubuntu/hyphy-common 2.5.36 dfsg-1
ubuntu/hyphy-pt 2.5.36 dfsg-1
ubuntu/ibverbs-providers 39.0-1
ubuntu/infernal 1.1.4-1
ubuntu/init-system-helpers 1.62
ubuntu/java-common 0.72build2
ubuntu/javascript-common 11 nmu1
ubuntu/kalign 1:3.3.1-1
ubuntu/lagan 2.0-6
ubuntu/libace-perl 1.92-11build1
ubuntu/libacl1 2.3.1-1
ubuntu/libalgorithm-diff-perl 1.201-1
ubuntu/libalgorithm-diff-xs-perl 0.04-6build3
ubuntu/libalgorithm-munkres-perl 0.08-3
ubuntu/libann0 1.1.2 doc-7build1
ubuntu/libapache-dbi-perl 1.12-2
ubuntu/libapache2-mod-perl2 2.0.12-1build1
ubuntu/libapache2-reload-perl 0.13-3
ubuntu/libapparmor1 3.0.4-2ubuntu2.2
ubuntu/libapr1 1.7.0-8ubuntu0.22.04.1
ubuntu/libaprutil1-dbd-sqlite3 1.6.1-5ubuntu4.22.04.1
ubuntu/libaprutil1-ldap 1.6.1-5ubuntu4.22.04.1
ubuntu/libaprutil1 1.6.1-5ubuntu4.22.04.1
ubuntu/libapt-pkg6.0 2.4.8
ubuntu/libargon2-1 0~20171227-0.3
ubuntu/libargtable2-0 13-1.1
ubuntu/libarray-compare-perl 3.0.8-1
ubuntu/libasound2-data 1.2.6.1-1ubuntu1
ubuntu/libasound2 1.2.6.1-1ubuntu1
ubuntu/libatk-bridge2.0-0 2.38.0-3
ubuntu/libatk-wrapper-java-jni 0.38.0-5build1
ubuntu/libatk-wrapper-java 0.38.0-5build1
ubuntu/libatk1.0-0 2.36.0-3build1
ubuntu/libatk1.0-data 2.36.0-3build1
ubuntu/libatspi2.0-0 2.44.0-3
ubuntu/libattr1 1:2.5.1-1build1
ubuntu/libaudit-common 1:3.0.7-1build1
ubuntu/libaudit1 1:3.0.7-1build1
ubuntu/libauthen-sasl-perl 2.1600-1.1
ubuntu/libavahi-client3 0.8-5ubuntu5
ubuntu/libavahi-common-data 0.8-5ubuntu5
ubuntu/libavahi-common3 0.8-5ubuntu5
ubuntu/libb-hooks-endofscope-perl 0.25-1
ubuntu/libb-hooks-op-check-perl 0.22-1build5
ubuntu/libbio-asn1-entrezgene-perl 1.730-2
ubuntu/libbio-cluster-perl 1.7.3-5
ubuntu/libbio-eutilities-perl 1.77-1
ubuntu/libbio-featureio-perl 1.6.905-2
ubuntu/libbio-perl-perl 1.7.8-1
ubuntu/libbio-perl-run-perl 1.7.3-8
ubuntu/libbio-tools-run-alignment-clustalw-perl 1.7.4-2
ubuntu/libbio-tools-run-remoteblast-perl 1.7.3-3
ubuntu/libbio-variation-perl 1.7.5-3
ubuntu/libbit-vector-perl 7.4-1build8
ubuntu/libblkid1 2.37.2-4ubuntu3
ubuntu/libbrotli1 1.0.9-2build6
ubuntu/libbsd-resource-perl 1.2911-1build7
ubuntu/libbsd0 0.11.5-1
ubuntu/libbz2-1.0 1.0.8-5build1
ubuntu/libc-bin 2.35-0ubuntu3.1
ubuntu/libc6 2.35-0ubuntu3.1
ubuntu/libcache-cache-perl 1.08-2
ubuntu/libcairo2 1.16.0-5ubuntu2
ubuntu/libcap-ng0 0.7.9-2.2build3
ubuntu/libcap2 1:2.44-1build3
ubuntu/libcapture-tiny-perl 0.48-1
ubuntu/libcarp-clan-perl 6.08-1
ubuntu/libcbor0.8 0.8.0-2ubuntu1
ubuntu/libcdt5 2.42.2-6
ubuntu/libcgi-fast-perl 1:2.15-1
ubuntu/libcgi-pm-perl 4.54-1
ubuntu/libcgraph6 2.42.2-6
ubuntu/libclass-data-inheritable-perl 0.08-3
ubuntu/libclass-inspector-perl 1.36-1
ubuntu/libclass-method-modifiers-perl 2.13-1
ubuntu/libclass-xsaccessor-perl 1.19-3build9
ubuntu/libclone-perl 0.45-1build3
ubuntu/libcom-err2 1.46.5-2ubuntu1.1
ubuntu/libconvert-binary-c-perl 0.84-1build1
ubuntu/libconvert-binhex-perl 1.125-1
ubuntu/libcrypt-rc4-perl 2.02-3
ubuntu/libcrypt1 1:4.4.27-1
ubuntu/libcryptsetup12 2:2.4.3-1ubuntu1.1
ubuntu/libcups2 2.4.1op1-1ubuntu4.1
ubuntu/libcurl3-gnutls 7.81.0-1ubuntu1.8
ubuntu/libcurl4 7.81.0-1ubuntu1.8
ubuntu/libdata-dump-perl 1.25-1
ubuntu/libdata-stag-perl 0.14-2
ubuntu/libdate-calc-perl 6.4-1.1
ubuntu/libdate-calc-xs-perl 6.4-1build7
ubuntu/libdate-manip-perl 6.86-1
ubuntu/libdatrie1 0.2.13-2
ubuntu/libdb5.3 5.3.28 dfsg1-0.8ubuntu3
ubuntu/libdbd-mysql-perl 4.050-5
ubuntu/libdbd-pg-perl 3.15.1-1
ubuntu/libdbd-sqlite3-perl 1.70-3build1
ubuntu/libdbi-perl 1.643-3build3
ubuntu/libdbus-1-3 1.12.20-2ubuntu4.1
ubuntu/libdconf1 0.40.0-3
ubuntu/libdebconfclient0 0.261ubuntu1
ubuntu/libdeflate0 1.10-2
ubuntu/libdevel-callchecker-perl 0.008-1ubuntu4
ubuntu/libdevel-stacktrace-perl 2.0400-1
ubuntu/libdevel-symdump-perl 2.18-4
ubuntu/libdevmapper1.02.1 2:1.02.175-2.1ubuntu4
ubuntu/libdigest-perl-md5-perl 1.9-1.1
ubuntu/libdivsufsort3 2.0.1-5
ubuntu/libdrm-amdgpu1 2.4.113-2~ubuntu0.22.04.1
ubuntu/libdrm-common 2.4.113-2~ubuntu0.22.04.1
ubuntu/libdrm-intel1 2.4.113-2~ubuntu0.22.04.1
ubuntu/libdrm-nouveau2 2.4.113-2~ubuntu0.22.04.1
ubuntu/libdrm-radeon1 2.4.113-2~ubuntu0.22.04.1
ubuntu/libdrm2 2.4.113-2~ubuntu0.22.04.1
ubuntu/libdynaloader-functions-perl 0.003-1.1
ubuntu/libedit2 3.1-20210910-1build1
ubuntu/libelf1 0.186-1build1
ubuntu/libencode-locale-perl 1.05-1.1
ubuntu/libencode-perl 3.16-1build1
ubuntu/liberror-perl 0.17029-1
ubuntu/libevent-core-2.1-7 2.1.12-stable-1build3
ubuntu/libevent-pthreads-2.1-7 2.1.12-stable-1build3
ubuntu/libexception-class-perl 1.45-1
ubuntu/libexpat1 2.4.7-1ubuntu0.2
ubuntu/libexporter-tiny-perl 1.002002-1
ubuntu/libext2fs2 1.46.5-2ubuntu1.1
ubuntu/libfabric1 1.11.0-3
ubuntu/libfcgi-bin 2.4.2-2build2
ubuntu/libfcgi-perl 0.82 ds-1build1
ubuntu/libfcgi0ldbl 2.4.2-2build2
ubuntu/libffi8 3.4.2-4
ubuntu/libfido2-1 1.10.0-1
ubuntu/libfile-listing-perl 6.14-1
ubuntu/libfile-slurp-perl 9999.32-1
ubuntu/libfile-slurp-tiny-perl 0.004-1
ubuntu/libfile-sort-perl 1.01-2
ubuntu/libfont-afm-perl 1.20-3
ubuntu/libfontconfig1 2.13.1-4.2ubuntu5
ubuntu/libfontenc1 1:1.1.4-1build3
ubuntu/libfreetype6 2.11.1 dfsg-1ubuntu0.1
ubuntu/libfreezethaw-perl 0.5001-2.1
ubuntu/libfribidi0 1.0.8-2ubuntu3.1
ubuntu/libgcc-s1 12.1.0-2ubuntu1~22.04
ubuntu/libgcrypt20 1.9.4-3ubuntu3
ubuntu/libgd-perl 2.76-2build1
ubuntu/libgd3 2.3.0-2ubuntu2
ubuntu/libgdbm-compat4 1.23-1
ubuntu/libgdbm6 1.23-1
ubuntu/libgfortran5 12.1.0-2ubuntu1~22.04
ubuntu/libgif7 5.1.9-2build2
ubuntu/libgirepository-1.0-1 1.72.0-1
ubuntu/libgl1-amber-dri 21.3.7-0ubuntu1
ubuntu/libgl1-mesa-dri 22.2.5-0ubuntu0.1~22.04.1
ubuntu/libgl1 1.4.0-1
ubuntu/libglapi-mesa 22.2.5-0ubuntu0.1~22.04.1
ubuntu/libglib2.0-0 2.72.4-0ubuntu1
ubuntu/libglib2.0-data 2.72.4-0ubuntu1
ubuntu/libglvnd0 1.4.0-1
ubuntu/libglx-mesa0 22.2.5-0ubuntu0.1~22.04.1
ubuntu/libglx0 1.4.0-1
ubuntu/libgmp10 2:6.2.1 dfsg-3ubuntu1
ubuntu/libgnutls30 3.7.3-4ubuntu1.1
ubuntu/libgomp1 12.1.0-2ubuntu1~22.04
ubuntu/libgpg-error0 1.43-3
ubuntu/libgraph-perl 1:0.9725-1
ubuntu/libgraphite2-3 1.3.14-1build2
ubuntu/libgraphviz-perl 2.24-1
ubuntu/libgs9-common 9.55.0~dfsg1-0ubuntu5.1
ubuntu/libgs9 9.55.0~dfsg1-0ubuntu5.1
ubuntu/libgssapi-krb5-2 1.19.2-2
ubuntu/libgts-0.7-5 0.7.6 darcs121130-5
ubuntu/libgts-bin 0.7.6 darcs121130-5
ubuntu/libgvc6 2.42.2-6
ubuntu/libgvpr2 2.42.2-6
ubuntu/libharfbuzz0b 2.7.4-1ubuntu3.1
ubuntu/libheap-perl 0.80-3
ubuntu/libhogweed6 3.7.3-1build2
ubuntu/libhpdf-2.3.0 2.3.0 dfsg-1build1
ubuntu/libhtml-form-perl 6.07-1
ubuntu/libhtml-format-perl 2.12-1.1
ubuntu/libhtml-parser-perl 3.76-1build2
ubuntu/libhtml-tableextract-perl 2.15-1.1
ubuntu/libhtml-tagset-perl 3.20-4
ubuntu/libhtml-tree-perl 5.07-2
ubuntu/libhts3 1.13 ds-2build1
ubuntu/libhtscodecs2 1.1.1-3
ubuntu/libhttp-cookies-perl 6.10-1
ubuntu/libhttp-daemon-perl 6.13-1ubuntu0.1
ubuntu/libhttp-date-perl 6.05-1
ubuntu/libhttp-message-perl 6.36-1
ubuntu/libhttp-negotiate-perl 6.01-1
ubuntu/libhwloc-plugins 2.7.0-2ubuntu1
ubuntu/libhwloc15 2.7.0-2ubuntu1
ubuntu/libibverbs1 39.0-1
ubuntu/libice6 2:1.0.10-1build2
ubuntu/libicu70 70.1-2ubuntu1
ubuntu/libidn12 1.38-4build1
ubuntu/libidn2-0 2.3.2-2build1
ubuntu/libijs-0.35 0.35-15build2
ubuntu/libimport-into-perl 1.002005-1
ubuntu/libio-html-perl 1.004-2
ubuntu/libio-pty-perl 1:1.15-2build2
ubuntu/libio-sessiondata-perl 1.03-1.1
ubuntu/libio-socket-ssl-perl 2.074-2
ubuntu/libio-string-perl 1.08-3.1
ubuntu/libio-stringy-perl 2.111-3
ubuntu/libip4tc2 1.8.7-1ubuntu5
ubuntu/libipc-run-perl 20200505.0-1
ubuntu/libipc-sharelite-perl 0.17-4build5
ubuntu/libjansson4 2.13.1-1.1build3
ubuntu/libjbig0 2.1-3.1ubuntu0.22.04.1
ubuntu/libjbig2dec0 0.19-3build2
ubuntu/libjcode-pm-perl 2.06-1.1
ubuntu/libjpeg-turbo8 2.1.2-0ubuntu1
ubuntu/libjpeg8 8c-2ubuntu10
ubuntu/libjs-jquery 3.6.0 dfsg ~3.5.13-1
ubuntu/libjson-c5 0.15-3~ubuntu1.22.04.1
ubuntu/libk5crypto3 1.19.2-2
ubuntu/libkeyutils1 1.6.1-2ubuntu3
ubuntu/libkmod2 29-1ubuntu1
ubuntu/libkrb5-3 1.19.2-2
ubuntu/libkrb5support0 1.19.2-2
ubuntu/liblab-gamut1 2.42.2-6
ubuntu/liblcms2-2 2.12~rc1-2build2
ubuntu/libldap-2.5-0 2.5.14 dfsg-0ubuntu0.22.04.1
ubuntu/libldap-common 2.5.14 dfsg-0ubuntu0.22.04.1
ubuntu/liblist-moreutils-perl 0.430-2
ubuntu/liblist-moreutils-xs-perl 0.430-2build2
ubuntu/libllvm15 1:15.0.6-3~ubuntu0.22.04.2
ubuntu/liblmdb0 0.9.24-1build2
ubuntu/libltdl7 2.4.6-15build2
ubuntu/liblua5.3-0 5.3.6-1build1
ubuntu/liblwp-mediatypes-perl 6.04-1
ubuntu/liblwp-protocol-https-perl 6.10-1
ubuntu/liblz4-1 1.9.3-2build2
ubuntu/liblzma5 5.2.5-2ubuntu1
ubuntu/libmagic-mgc 1:5.41-3
ubuntu/libmagic1 1:5.41-3
ubuntu/libmailtools-perl 2.21-1
ubuntu/libmath-derivative-perl 1.01-1.1
ubuntu/libmath-spline-perl 0.02-2
ubuntu/libmbedcrypto7 2.28.0-1build1
ubuntu/libmbedtls14 2.28.0-1build1
ubuntu/libmbedx509-1 2.28.0-1build1
ubuntu/libmd0 1.0.4-1build1
ubuntu/libmime-tools-perl 5.509-1
ubuntu/libmldbm-perl 2.05-2.1
ubuntu/libmodule-implementation-perl 0.09-1.1
ubuntu/libmodule-runtime-perl 0.016-1
ubuntu/libmoo-perl 2.005004-3
ubuntu/libmount1 2.37.2-4ubuntu3
ubuntu/libmpdec3 2.5.1-2build2
ubuntu/libmpfr6 4.1.0-3build3
ubuntu/libmysqlclient21 8.0.32-0ubuntu0.22.04.2
ubuntu/libnamespace-clean-perl 0.27-1
ubuntu/libncurses6 6.3-2
ubuntu/libncursesw6 6.3-2
ubuntu/libnet-http-perl 6.22-1
ubuntu/libnet-smtp-ssl-perl 1.04-1
ubuntu/libnet-ssleay-perl 1.92-1build2
ubuntu/libnettle8 3.7.3-1build2
ubuntu/libnghttp2-14 1.43.0-1build3
ubuntu/libnl-3-200 3.5.0-0.1
ubuntu/libnl-route-3-200 3.5.0-0.1
ubuntu/libnsl2 1.3.0-2build2
ubuntu/libnspr4 2:4.32-3build1
ubuntu/libnss-systemd 249.11-0ubuntu3.7
ubuntu/libnss3 2:3.68.2-0ubuntu1.2
ubuntu/libnuma1 2.0.14-3ubuntu2
ubuntu/libole-storage-lite-perl 0.20-1
ubuntu/libopenjp2-7 2.4.0-6
ubuntu/libopenmpi3 4.1.2-2ubuntu1
ubuntu/libossp-uuid-perl 1.6.2-1.5build9
ubuntu/libossp-uuid16 1.6.2-1.5build9
ubuntu/libp11-kit0 0.24.0-6build1
ubuntu/libpackage-stash-perl 0.39-1
ubuntu/libpackage-stash-xs-perl 0.29-1build5
ubuntu/libpam-modules-bin 1.4.0-11ubuntu2
ubuntu/libpam-modules 1.4.0-11ubuntu2
ubuntu/libpam-runtime 1.4.0-11ubuntu2
ubuntu/libpam-systemd 249.11-0ubuntu3.7
ubuntu/libpam0g 1.4.0-11ubuntu2
ubuntu/libpango-1.0-0 1.50.6 ds-2ubuntu1
ubuntu/libpangocairo-1.0-0 1.50.6 ds-2ubuntu1
ubuntu/libpangoft2-1.0-0 1.50.6 ds-2ubuntu1
ubuntu/libpaper-utils 1.1.28build2
ubuntu/libpaper1 1.1.28build2
ubuntu/libparams-classify-perl 0.015-1build5
ubuntu/libparse-recdescent-perl 1.967015 dfsg-2
ubuntu/libpathplan4 2.42.2-6
ubuntu/libpciaccess0 0.16-3
ubuntu/libpcre2-8-0 10.39-3ubuntu0.1
ubuntu/libpcre3 2:8.39-13ubuntu0.22.04.1
ubuntu/libpcsclite1 1.9.5-3
ubuntu/libperl5.34 5.34.0-3ubuntu1.1
ubuntu/libpixman-1-0 0.40.0-1ubuntu0.22.04.1
ubuntu/libpmix2 4.1.2-2ubuntu1
ubuntu/libpng16-16 1.6.37-3build5
ubuntu/libpostscript-perl 0.06-3.1
ubuntu/libpq5 14.7-0ubuntu0.22.04.1
ubuntu/libprocps8 2:3.3.17-6ubuntu2
ubuntu/libpsl5 0.21.0-1.2build2
ubuntu/libpsm-infinipath1 3.3 20.604758e7-6.1
ubuntu/libpsm2-2 11.2.185-1
ubuntu/libpython2-stdlib 2.7.18-3
ubuntu/libpython2.7-minimal 2.7.18-13ubuntu1.1
ubuntu/libpython2.7-stdlib 2.7.18-13ubuntu1.1
ubuntu/libpython3-stdlib 3.10.6-1~22.04
ubuntu/libpython3.10-minimal 3.10.6-1~22.04.2
ubuntu/libpython3.10-stdlib 3.10.6-1~22.04.2
ubuntu/libquadmath0 12.1.0-2ubuntu1~22.04
ubuntu/librdmacm1 39.0-1
ubuntu/libreadline8 8.1.2-1
ubuntu/libreadonly-perl 2.050-3
ubuntu/libref-util-perl 0.204-1
ubuntu/libref-util-xs-perl 0.117-1build5
ubuntu/librole-tiny-perl 2.002004-1
ubuntu/librtmp1 2.4 20151223.gitfa8646d.1-2build4
ubuntu/libruby3.0 3.0.2-7ubuntu2.3
ubuntu/libsasl2-2 2.1.27 dfsg2-3ubuntu1.2
ubuntu/libsasl2-modules-db 2.1.27 dfsg2-3ubuntu1.2
ubuntu/libsasl2-modules 2.1.27 dfsg2-3ubuntu1.2
ubuntu/libseccomp2 2.5.3-2ubuntu2
ubuntu/libselinux1 3.3-1build2
ubuntu/libsemanage-common 3.3-1build2
ubuntu/libsemanage2 3.3-1build2
ubuntu/libsensors-config 1:3.6.0-7ubuntu1
ubuntu/libsensors5 1:3.6.0-7ubuntu1
ubuntu/libsepol2 3.3-1build1
ubuntu/libset-object-perl 1.42-1build1
ubuntu/libset-scalar-perl 1.29-2
ubuntu/libsigsegv2 2.13-1ubuntu3
ubuntu/libsm6 2:1.2.3-1build2
ubuntu/libsmartcols1 2.37.2-4ubuntu3
ubuntu/libsoap-lite-perl 1.27-1
ubuntu/libsort-naturally-perl 1.03-2
ubuntu/libspreadsheet-parseexcel-perl 0.6500-1.1
ubuntu/libspreadsheet-writeexcel-perl 2.40-1.1
ubuntu/libsqlite3-0 3.37.2-2ubuntu0.1
ubuntu/libss2 1.46.5-2ubuntu1.1
ubuntu/libssh-4 0.9.6-2build1
ubuntu/libssl3 3.0.2-0ubuntu1.7
ubuntu/libstatistics-descriptive-perl 3.0800-1
ubuntu/libstdc 6 12.1.0-2ubuntu1~22.04
ubuntu/libsub-exporter-progressive-perl 0.001013-1
ubuntu/libsub-identify-perl 0.14-1build5
ubuntu/libsub-name-perl 0.26-1build3
ubuntu/libsub-quote-perl 2.006006-1
ubuntu/libsub-uplevel-perl 0.2800-1.1
ubuntu/libsvg-graph-perl 0.02-3
ubuntu/libsvg-perl 2.86-1
ubuntu/libsystemd0 249.11-0ubuntu3.7
ubuntu/libtask-weaken-perl 1.06-1
ubuntu/libtasn1-6 4.18.0-4build1
ubuntu/libtest-deep-perl 1.130-1
ubuntu/libtest-differences-perl 0.69-1
ubuntu/libtest-exception-perl 0.43-1
ubuntu/libtest-most-perl 0.37-1
ubuntu/libtest-requiresinternet-perl 0.05-3
ubuntu/libtest-warn-perl 0.36-1
ubuntu/libtext-csv-perl 2.01-1
ubuntu/libtext-csv-xs-perl 1.47-1build1
ubuntu/libtext-diff-perl 1.45-1
ubuntu/libtext-iconv-perl 1.7-7build3
ubuntu/libthai-data 0.1.29-1build1
ubuntu/libthai0 0.1.29-1build1
ubuntu/libtie-ixhash-perl 1.23-2.1
ubuntu/libtiff5 4.3.0-6ubuntu0.4
ubuntu/libtimedate-perl 2.3300-2
ubuntu/libtinfo6 6.3-2
ubuntu/libtirpc-common 1.3.2-2ubuntu0.1
ubuntu/libtirpc3 1.3.2-2ubuntu0.1
ubuntu/libtree-dagnode-perl 1.32-1
ubuntu/libtry-tiny-perl 0.31-1
ubuntu/libtype-tiny-perl 1.012004-1
ubuntu/libtype-tiny-xs-perl 0.022-1build2
ubuntu/libucx0 1.12.1~rc2-1
ubuntu/libudev1 249.11-0ubuntu3.6
ubuntu/libunicode-map-perl 0.112-12build4
ubuntu/libunistring2 1.0-1
ubuntu/liburi-perl 5.10-1
ubuntu/libuuid1 2.37.2-4ubuntu3
ubuntu/libvariable-magic-perl 0.62-1build5
ubuntu/libwebp7 1.2.2-2
ubuntu/libwww-perl 6.61-1
ubuntu/libwww-robotrules-perl 6.02-1
ubuntu/libx11-6 2:1.7.5-1
ubuntu/libx11-data 2:1.7.5-1
ubuntu/libx11-xcb1 2:1.7.5-1
ubuntu/libxau6 1:1.0.9-1build5
ubuntu/libxaw7 2:1.0.14-1
ubuntu/libxcb-dri2-0 1.14-3ubuntu3
ubuntu/libxcb-dri3-0 1.14-3ubuntu3
ubuntu/libxcb-glx0 1.14-3ubuntu3
ubuntu/libxcb-present0 1.14-3ubuntu3
ubuntu/libxcb-render0 1.14-3ubuntu3
ubuntu/libxcb-shape0 1.14-3ubuntu3
ubuntu/libxcb-shm0 1.14-3ubuntu3
ubuntu/libxcb-sync1 1.14-3ubuntu3
ubuntu/libxcb-xfixes0 1.14-3ubuntu3
ubuntu/libxcb1 1.14-3ubuntu3
ubuntu/libxcomposite1 1:0.4.5-1build2
ubuntu/libxdmcp6 1:1.1.3-0ubuntu5
ubuntu/libxext6 2:1.3.4-1build1
ubuntu/libxfixes3 1:6.0.0-1
ubuntu/libxft2 2.3.4-1
ubuntu/libxi6 2:1.8-1build1
ubuntu/libxinerama1 2:1.1.4-3
ubuntu/libxkbfile1 1:1.1.0-1build3
ubuntu/libxml-dom-perl 1.46-1
ubuntu/libxml-dom-xpath-perl 0.14-3
ubuntu/libxml-filter-buffertext-perl 1.01-6
ubuntu/libxml-libxml-perl 2.0207 dfsg really 2.0134-1
ubuntu/libxml-libxslt-perl 1.99-1build2
ubuntu/libxml-namespacesupport-perl 1.12-1.1
ubuntu/libxml-parser-perl 2.46-3build1
ubuntu/libxml-perl 0.08-3.1
ubuntu/libxml-regexp-perl 0.04-1.1
ubuntu/libxml-sax-base-perl 1.09-1.1
ubuntu/libxml-sax-expat-perl 0.51-1
ubuntu/libxml-sax-perl 1.02 dfsg-3
ubuntu/libxml-sax-writer-perl 0.57-1.1
ubuntu/libxml-simple-perl 2.25-1
ubuntu/libxml-twig-perl 1:3.52-1
ubuntu/libxml-writer-perl 0.900-1
ubuntu/libxml-xpath-perl 1.44-1
ubuntu/libxml-xpathengine-perl 0.14-1
ubuntu/libxml2 2.9.13 dfsg-1ubuntu0.2
ubuntu/libxmlrpc-lite-perl 0.717-4
ubuntu/libxmu6 2:1.1.3-3
ubuntu/libxmuu1 2:1.1.3-3
ubuntu/libxnvctrl0 510.47.03-0ubuntu1
ubuntu/libxpm4 1:3.5.12-1ubuntu0.22.04.1
ubuntu/libxrandr2 2:1.5.2-1build1
ubuntu/libxrender1 1:0.9.10-1build4
ubuntu/libxshmfence1 1.3-1build4
ubuntu/libxslt1.1 1.1.34-4ubuntu0.22.04.1
ubuntu/libxt6 1:1.2.1-1
ubuntu/libxtst6 2:1.2.3-1build4
ubuntu/libxv1 2:1.0.11-1build2
ubuntu/libxxf86dga1 2:1.1.5-0ubuntu3
ubuntu/libxxf86vm1 1:1.1.4-1build3
ubuntu/libxxhash0 0.8.1-1
ubuntu/libyaml-0-2 0.2.2-1build2
ubuntu/libyaml-libyaml-perl 0.83 ds-1build1
ubuntu/libyaml-perl 1.30-1
ubuntu/libzstd1 1.4.8 dfsg-3build1
ubuntu/login 1:4.8.1-2ubuntu2.1
ubuntu/logsave 1.46.5-2ubuntu1.1
ubuntu/lsb-base 11.1.0ubuntu4
ubuntu/lynx-common 2.9.0dev.10-1
ubuntu/lynx 2.9.0dev.10-1
ubuntu/mafft 7.490-1
ubuntu/mailcap 3.70 nmu1ubuntu1
ubuntu/maq 0.7.1-9
ubuntu/mawk 1.3.4.20200120-3
ubuntu/med-config 3.7.1
ubuntu/media-types 7.0.0
ubuntu/menu 2.1.47ubuntu4
ubuntu/mime-support 3.66
ubuntu/mount 2.37.2-4ubuntu3
ubuntu/mummer 3.23 dfsg-7
ubuntu/muscle 1:3.8.1551-2build1
ubuntu/mustang 3.2.3-4
ubuntu/mysql-common 5.8 1.0.8
ubuntu/ncbi-blast -legacy 2.12.0 ds-3build1
ubuntu/ncbi-blast 2.12.0 ds-3build1
ubuntu/ncbi-data 6.1.20170106 dfsg1-9
ubuntu/ncoils 2002-9
ubuntu/ncurses-base 6.3-2
ubuntu/ncurses-bin 6.3-2
ubuntu/netbase 6.3
ubuntu/networkd-dispatcher 2.1-2ubuntu0.22.04.2
ubuntu/ocl-icd-libopencl1 2.2.14-3
ubuntu/openjdk-11-jdk-headless 11.0.18 10-0ubuntu1~22.04
ubuntu/openjdk-11-jre-headless 11.0.18 10-0ubuntu1~22.04
ubuntu/openjdk-11-jre 11.0.18 10-0ubuntu1~22.04
ubuntu/openmpi-bin 4.1.2-2ubuntu1
ubuntu/openmpi-common 4.1.2-2ubuntu1
ubuntu/openssh-client 1:8.9p1-3ubuntu0.1
ubuntu/openssl 3.0.2-0ubuntu1.8
ubuntu/pal2nal 14.1-3
ubuntu/paml 4.9j dfsg-3
ubuntu/passwd 1:4.8.1-2ubuntu2.1
ubuntu/perl-base 5.34.0-3ubuntu1.1
ubuntu/perl-doc 5.34.0-3ubuntu1.1
ubuntu/perl-modules-5.34 5.34.0-3ubuntu1.1
ubuntu/perl-openssl-defaults 5build2
ubuntu/perl-tk 1:804.035-2build1
ubuntu/perl 5.34.0-3ubuntu1.1
ubuntu/pftools 3.2.11-2
ubuntu/phylip 1:3.697 dfsg-2
ubuntu/phyml 3:3.3.20211231-1
ubuntu/poa 2.0 20060928-8
ubuntu/poppler-data 0.4.11-1
ubuntu/prank 0.0.170427 dfsg-3
ubuntu/primer3 2.5.0-1
ubuntu/probalign 1.4-9
ubuntu/probcons 1.12-14
ubuntu/procps 2:3.3.17-6ubuntu2
ubuntu/proda 1.0-13
ubuntu/publicsuffix 20211207.1025-1
ubuntu/python2-minimal 2.7.18-3
ubuntu/python2.7-minimal 2.7.18-13ubuntu1.1
ubuntu/python2.7 2.7.18-13ubuntu1.1
ubuntu/python2 2.7.18-3
ubuntu/python3-dbus 1.2.18-3build1
ubuntu/python3-gi 3.42.1-0ubuntu1
ubuntu/python3-minimal 3.10.6-1~22.04
ubuntu/python3.10-minimal 3.10.6-1~22.04.2
ubuntu/python3.10 3.10.6-1~22.04.2
ubuntu/python3 3.10.6-1~22.04
ubuntu/rake 13.0.6-2
ubuntu/raxml 8.2.12 dfsg-8
ubuntu/readline-common 8.1.2-1
ubuntu/ruby-net-telnet 0.1.1-2
ubuntu/ruby-rubygems 3.3.5-2ubuntu1
ubuntu/ruby-webrick 1.7.0-3
ubuntu/ruby-xmlrpc 0.3.2-1ubuntu0.1
ubuntu/ruby3.0 3.0.2-7ubuntu2.3
ubuntu/ruby 1:3.0~exp1
ubuntu/rubygems-integration 1.18
ubuntu/samtools 1.13-4
ubuntu/sed 4.8-1ubuntu2
ubuntu/sensible-utils 0.0.17
ubuntu/session-migration 0.3.6
ubuntu/shared-mime-info 2.1-2
ubuntu/sim4 0.0.20121010-8
ubuntu/systemd-sysv 249.11-0ubuntu3.7
ubuntu/systemd-timesyncd 249.11-0ubuntu3.7
ubuntu/systemd 249.11-0ubuntu3.7
ubuntu/sysvinit-utils 3.01-1ubuntu1
ubuntu/t-coffee 13.41.0.28bdc39 dfsg-4
ubuntu/tar 1.34 dfsg-1build3
ubuntu/tigr-glimmer 3.02b-6
ubuntu/tm-align 20190822 dfsg-2build1
ubuntu/ubuntu-keyring 2021.03.26
ubuntu/ucf 3.0043
ubuntu/unzip 6.0-26ubuntu3.1
ubuntu/usrmerge 25ubuntu2
ubuntu/util-linux 2.37.2-4ubuntu3
ubuntu/wget 1.21.2-2ubuntu1
ubuntu/wise-data 2.4.1-23
ubuntu/wise 2.4.1-23
ubuntu/wkhtmltox 1:0.12.6.1-2.jammy
ubuntu/x11-common 1:7.7 23ubuntu2
ubuntu/x11-utils 7.7 5build2
ubuntu/xauth 1:1.1-1build2
ubuntu/xdg-user-dirs 0.17-2ubuntu4
ubuntu/xfonts-75dpi 1:1.0.4 nmu1.1
ubuntu/xfonts-base 1:1.0.5
ubuntu/xfonts-encodings 1:1.0.5-0ubuntu2
ubuntu/xfonts-utils 1:7.7 6build2
ubuntu/xz-utils 5.2.5-2ubuntu1
ubuntu/zip 3.0-12build2
ubuntu/zlib1g 1:1.2.11.dfsg-2ubuntu9.2

bash 5.1.16

DrawTree:DrawTree 3.697
MarkDuplicates:MarkDuplicates 1.118(2329276ea55d31ab6b19bab55b9ee7b51e4a446e_1406559781)
args4j:args4j 2.33
cisd-jhdf5:cisd-jhdf5 *
com.carrotsearch:hppc 0.7.2
com.clearspring.analytics:stream 2.7.0
com.esotericsoftware:kryo-shaded 4.0.2
com.esotericsoftware:kryo 4.0.0
com.esotericsoftware:minlog 1.3.0
com.esotericsoftware:reflectasm 1.10.0
com.esotericsoftware:reflectasm 1.11.3
com.fasterxml.jackson.core:jackson-annotations 2.10.5
com.fasterxml.jackson.core:jackson-annotations 2.13.1
com.fasterxml.jackson.core:jackson-core 2.10.5
com.fasterxml.jackson.core:jackson-core 2.13.1
com.fasterxml.jackson.core:jackson-databind 2.10.5
com.fasterxml.jackson.core:jackson-databind 2.13.1
com.fasterxml.jackson.jaxrs:jackson-jaxrs-base 2.13.1
com.fasterxml.jackson.jaxrs:jackson-jaxrs-json-provider 2.13.1
com.fasterxml.jackson.module:jackson-module-jaxb-annotations 2.13.1
com.fasterxml.woodstox:woodstox-core 5.0.3
com.github.fommil.netlib:core 1.1
com.github.fommil.netlib:core 1.1.2
com.github.fommil.netlib:native_ref-java 1.1
com.github.fommil.netlib:native_system-java 1.1
com.github.fommil.netlib:netlib-native_ref-linux-x86_64 1.1
com.github.fommil.netlib:netlib-native_ref-osx-x86_64 1.1
com.github.fommil.netlib:netlib-native_system-linux-x86_64 1.1
com.github.fommil.netlib:netlib-native_system-osx-x86_64 1.1
com.github.fommil:jniloader 1.1
com.github.jsr203hadoop:jsr203hadoop 1.0.3
com.github.rwl:jtransforms 2.4.0
com.github.stephenc.jcip:jcip-annotations 1.0-1
com.google.android:annotations 4.1.1.4
com.google.api-client:google-api-client 1.33.2
com.google.api.grpc:grpc-google-cloud-bigquerystorage-v1 2.9.1
com.google.api.grpc:grpc-google-cloud-bigquerystorage-v1beta1 0.133.1
com.google.api.grpc:grpc-google-cloud-bigquerystorage-v1beta2 0.133.1
com.google.api.grpc:proto-google-cloud-bigquerystorage-v1 2.9.1
com.google.api.grpc:proto-google-cloud-bigquerystorage-v1beta1 0.133.1
com.google.api.grpc:proto-google-cloud-bigquerystorage-v1beta2 0.133.1
com.google.api.grpc:proto-google-common-protos 2.7.4
com.google.api.grpc:proto-google-iam-v1 1.2.6
com.google.apis:google-api-services-bigquery v2-rev20220123-1.32.1
com.google.apis:google-api-services-storage v1-rev20220210-1.32.1
com.google.auth:google-auth-library-credentials 1.5.3
com.google.auth:google-auth-library-oauth2-http 1.5.3
com.google.auto.value:auto-value-annotations 1.9
com.google.cloud.bigdataoss:gcs-connector 1.9.4-hadoop3
com.google.cloud.bigdataoss:gcsio 1.9.4
com.google.cloud.bigdataoss:util-hadoop 1.9.4-hadoop3
com.google.cloud.bigdataoss:util 1.9.4
com.google.cloud:google-cloud-bigquery 2.9.0
com.google.cloud:google-cloud-bigquerystorage 2.9.1
com.google.cloud:google-cloud-core-http 2.5.6
com.google.cloud:google-cloud-core 2.5.6
com.google.cloud:google-cloud-nio 0.123.25
com.google.cloud:google-cloud-storage 2.4.5
com.google.code.findbugs:jsr305 3.0.2
com.google.code.gson:gson 2.8.7
com.google.code.gson:gson 2.9.0
com.google.errorprone:error_prone_annotations 2.11.0
com.google.guava:failureaccess 1.0.1
com.google.guava:guava 31.0.1-jre
com.google.guava:listenablefuture 9999.0-empty-to-avoid-conflict-with-guava
com.google.http-client:google-http-client-apache-v2 1.41.4
com.google.http-client:google-http-client-appengine 1.41.4
com.google.http-client:google-http-client-gson 1.41.4
com.google.http-client:google-http-client-jackson2 1.41.4
com.google.http-client:google-http-client 1.41.4
com.google.j2objc:j2objc-annotations 1.3
com.google.oauth-client:google-oauth-client 1.33.1
com.google.protobuf:protobuf-java-util 3.19.4
com.google.protobuf:protobuf-java 2.5.0
com.google.protobuf:protobuf-java 3.21.6
com.google.re2j:re2j 1.1
com.googlecode.charts4j:charts4j 1.3
com.googlecode.json-simple:json-simple 1.1.1
com.googlecode.protobuf-java-format:protobuf-java-format 1.2
com.nimbusds:nimbus-jose-jwt 4.41.1
com.ning:compress-lzf 1.0.3
com.opencsv:opencsv 3.4
com.squareup.okhttp:okhttp 2.7.5
com.squareup.okio:okio 1.6.0
com.sun.activation:jakarta.activation 1.2.2
com.sun.istack:istack-commons-runtime 3.0.12
com.sun.jersey.contribs:jersey-guice 1.19
com.sun.jersey:jersey-client 1.19
com.sun.jersey:jersey-core 1.19
com.sun.jersey:jersey-json 1.19
com.sun.jersey:jersey-server 1.19
com.sun.jersey:jersey-servlet 1.19
com.thoughtworks.paranamer:paranamer 2.8
com.univocity:univocity-parsers 2.7.3
com.vlkan:flatbuffers 1.2.0-3f79e055
commons-beanutils:commons-beanutils 1.9.3
commons-cli:commons-cli 1.2
commons-cli:commons-cli 1.5.0
commons-codec:commons-codec 1.15
commons-collections:commons-collections 3.2.2
commons-io:commons-io 1.4
commons-io:commons-io 2.11.0
commons-io:commons-io 2.6
commons-lang:commons-lang 2.4
commons-lang:commons-lang 2.6
commons-logging:commons-logging 1.1.1
commons-logging:commons-logging 1.2
commons-net:commons-net 3.6
commons-pool:commons-pool 1.6
de.javakaffee:kryo-serializers 0.42
dnsjava:dnsjava 2.1.7
gov.nist.math.jama:gov.nist.math.jama 1.1.1
htsjdk:htsjdk 2.24.1-SNAPSHOT
io.airlift:aircompressor 0.10
io.dropwizard.metrics:metrics-core 3.1.5
io.dropwizard.metrics:metrics-graphite 3.1.5
io.dropwizard.metrics:metrics-json 3.1.5
io.dropwizard.metrics:metrics-jvm 3.1.5
io.netty:netty-all 4.1.42.Final
io.netty:netty 3.10.6.Final
jakarta.activation:jakarta.activation-api 1.2.2
jakarta.xml.bind:jakarta.xml.bind-api 2.3.3
jarhdf5:jarhdf5 2.11.0
javax.activation:javax.activation-api 1.2.0
javax.annotation:javax.annotation-api 1.3.2
javax.servlet:javax.servlet-api 3.1.0
javax.validation:validation-api 1.1.0.Final
javax.ws.rs:javax.ws.rs-api 2.0.1
javax.ws.rs:jsr311-api 1.1.1
javax.xml.bind:jaxb-api 2.2.11
javax.xml.bind:jaxb-api 2.3.1
jbzip2:jbzip2 0.9
jline:jline 0.9.94
joda-time:joda-time 2.9.9
jrt-fs:jrt-fs 11.0.18
log4j:log4j 1.2.17
net.grey-panther:natural-comparator 1.1
net.minidev:accessors-smart 1.2
net.minidev:json-smart 2.3
net.razorvine:pyrolite 4.13
net.sf.jopt-simple:jopt-simple 5.0.3
net.sf.opencsv:opencsv 2.3
net.sf.py4j:py4j 0.10.7
net.sf.varscan.VarScan:VarScan *
org.GNOME.Accessibility.AtkWrapper:java-atk-wrapper *
org.abego.treelayout:org.abego.treelayout.core 1.0.3
org.aeonbits.owner:owner 1.0.9
org.antlr:ST4 4.3.1
org.antlr:antlr-runtime 3.5.2
org.antlr:antlr4-runtime 4.6
org.antlr:antlr4-runtime 4.7
org.antlr:antlr4-runtime 4.9.3
org.antlr:antlr4 4.9.3
org.apache.arrow:arrow-format 0.10.0
org.apache.arrow:arrow-memory 0.10.0
org.apache.arrow:arrow-vector 0.10.0
org.apache.avro:avro-guava-dependencies 1.8.2
org.apache.avro:avro-ipc 1.8.2
org.apache.avro:avro-mapred 1.8.2
org.apache.avro:avro 1.8.2
org.apache.commons:commons-collections4 4.3
org.apache.commons:commons-compress 1.19
org.apache.commons:commons-configuration2 2.4
org.apache.commons:commons-crypto 1.0.0
org.apache.commons:commons-jexl 2.1.1
org.apache.commons:commons-lang3 3.8.1
org.apache.commons:commons-math3 3.5
org.apache.commons:commons-math3 3.6.1
org.apache.commons:commons-text 1.6
org.apache.commons:commons-vfs2 2.0
org.apache.curator:curator-client 2.13.0
org.apache.curator:curator-framework 2.13.0
org.apache.curator:curator-recipes 2.13.0
org.apache.hadoop:hadoop-annotations 3.2.1
org.apache.hadoop:hadoop-auth 3.2.1
org.apache.hadoop:hadoop-client 3.2.1
org.apache.hadoop:hadoop-common 3.2.1
org.apache.hadoop:hadoop-hdfs-client 3.2.1
org.apache.hadoop:hadoop-mapreduce-client-common 3.2.1
org.apache.hadoop:hadoop-mapreduce-client-core 3.2.1
org.apache.hadoop:hadoop-mapreduce-client-jobclient 3.2.1
org.apache.hadoop:hadoop-yarn-api 3.2.1
org.apache.hadoop:hadoop-yarn-client 3.2.1
org.apache.hadoop:hadoop-yarn-common 3.2.1
org.apache.hive:hive-storage-api 2.6.0
org.apache.htrace:htrace-core4 4.1.0-incubating
org.apache.httpcomponents:httpclient 4.5.13
org.apache.httpcomponents:httpcore 4.4.15
org.apache.kerby:kerb-admin 1.0.1
org.apache.kerby:kerb-client 1.0.1
org.apache.kerby:kerb-common 1.0.1
org.apache.kerby:kerb-core 1.0.1
org.apache.kerby:kerb-crypto 1.0.1
org.apache.kerby:kerb-identity 1.0.1
org.apache.kerby:kerb-server 1.0.1
org.apache.kerby:kerb-simplekdc 1.0.1
org.apache.kerby:kerb-util 1.0.1
org.apache.kerby:kerby-asn1 1.0.1
org.apache.kerby:kerby-config 1.0.1
org.apache.kerby:kerby-pkix 1.0.1
org.apache.kerby:kerby-util 1.0.1
org.apache.kerby:kerby-xdr 1.0.1
org.apache.kerby:token-provider 1.0.1
org.apache.logging.log4j:log4j-api 2.17.1
org.apache.logging.log4j:log4j-core 2.17.1
org.apache.logging.log4j:log4j-jcl 2.17.1
org.apache.logging.log4j:log4j-slf4j-impl 2.17.1
org.apache.maven.scm:maven-scm-api 1.4
org.apache.maven.scm:maven-scm-provider-svn-commons 1.4
org.apache.maven.scm:maven-scm-provider-svnexe 1.4
org.apache.orc:orc-core 1.5.5
org.apache.orc:orc-mapreduce 1.5.5
org.apache.orc:orc-shims 1.5.5
org.apache.parquet:parquet-avro 1.10.1
org.apache.parquet:parquet-column 1.10.1
org.apache.parquet:parquet-common 1.10.1
org.apache.parquet:parquet-encoding 1.10.1
org.apache.parquet:parquet-format 2.4.0
org.apache.parquet:parquet-hadoop 1.10.1
org.apache.parquet:parquet-jackson 1.10.1
org.apache.spark:spark-catalyst_2.11 2.4.5
org.apache.spark:spark-core_2.11 2.4.5
org.apache.spark:spark-graphx_2.11 2.4.5
org.apache.spark:spark-kvstore_2.11 2.4.5
org.apache.spark:spark-launcher_2.11 2.4.5
org.apache.spark:spark-mllib-local_2.11 2.4.5
org.apache.spark:spark-mllib_2.11 2.4.5
org.apache.spark:spark-network-common_2.11 2.4.5
org.apache.spark:spark-network-shuffle_2.11 2.4.5
org.apache.spark:spark-sketch_2.11 2.4.5
org.apache.spark:spark-sql_2.11 2.4.5
org.apache.spark:spark-streaming_2.11 2.4.5
org.apache.spark:spark-tags_2.11 2.4.5
org.apache.spark:spark-unsafe_2.11 2.4.5
org.apache.xbean:xbean-asm-util 4.8
org.apache.xbean:xbean-asm6-shaded 4.8
org.apache.yetus:audience-annotations 0.5.0
org.apfloat:apfloat 1.10.1
org.bdgenomics.adam:adam-codegen-spark2_2.11 0.28.0
org.bdgenomics.adam:adam-core-spark2_2.11 0.28.0
org.bdgenomics.bdg-formats:bdg-formats 0.13.0
org.bdgenomics.utils:utils-cli-spark2_2.11 0.2.15
org.bdgenomics.utils:utils-intervalrdd-spark2_2.11 0.2.15
org.bdgenomics.utils:utils-io-spark2_2.11 0.2.15
org.bdgenomics.utils:utils-metrics-spark2_2.11 0.2.15
org.bdgenomics.utils:utils-misc-spark2_2.11 0.2.15
org.biojava.thirdparty:forester 1.039
org.broadinstitute.hellbender.Main:gatk-package 4.3.0.0-local
org.broadinstitute.hellbender.Main:gatk-package 4.3.0.0-spark
org.codehaus.janino:commons-compiler 3.0.9
org.codehaus.janino:janino 3.0.9
org.codehaus.jettison:jettison 1.1
org.codehaus.mojo:animal-sniffer-annotations 1.20
org.codehaus.plexus:plexus-interpolation 1.0
org.codehaus.plexus:plexus-utils 1.5.6
org.codehaus.woodstox:stax2-api 3.1.4
org.debian.security.UpdateCertificates:ca-certificates-java *
org.disq-bio:disq 0.3.6
org.eclipse.jetty:jetty-client 9.3.27.v20190418
org.eclipse.jetty:jetty-continuation 9.3.27.v20190418
org.eclipse.jetty:jetty-http 9.3.27.v20190418
org.eclipse.jetty:jetty-io 9.3.27.v20190418
org.eclipse.jetty:jetty-plus 9.3.27.v20190418
org.eclipse.jetty:jetty-proxy 9.3.27.v20190418
org.eclipse.jetty:jetty-security 9.3.27.v20190418
org.eclipse.jetty:jetty-server 9.3.27.v20190418
org.eclipse.jetty:jetty-servlet 9.3.27.v20190418
org.eclipse.jetty:jetty-servlets 9.3.27.v20190418
org.eclipse.jetty:jetty-util 9.3.27.v20190418
org.eclipse.jetty:jetty-webapp 9.3.24.v20180605
org.eclipse.jetty:jetty-xml 9.3.24.v20180605
org.fusesource.leveldbjni:leveldbjni-all 1.8
org.genomicsdb:genomicsdb 1.4.3
org.glassfish.hk2.external:aopalliance-repackaged 2.4.0-b34
org.glassfish.hk2.external:javax.inject 2.4.0-b34
org.glassfish.hk2:hk2-api 2.4.0-b34
org.glassfish.hk2:hk2-locator 2.4.0-b34
org.glassfish.hk2:hk2-utils 2.4.0-b34
org.glassfish.hk2:osgi-resource-locator 1.0.1
org.glassfish.jaxb:jaxb-runtime 2.3.5
org.glassfish.jaxb:txw2 2.3.5
org.glassfish.jersey.bundles.repackaged:jersey-guava 2.22.2
org.glassfish.jersey.containers:jersey-container-servlet-core 2.22.2
org.glassfish.jersey.containers:jersey-container-servlet 2.22.2
org.glassfish.jersey.core:jersey-client 2.22.2
org.glassfish.jersey.core:jersey-common 2.22.2
org.glassfish.jersey.core:jersey-server 2.22.2
org.glassfish.jersey.media:jersey-media-jaxb 2.22.2
org.glassfish:javax.json 1.0.4
org.hipparchus:hipparchus-core 2.0
org.hipparchus:hipparchus-stat 2.0
org.javassist:javassist 3.18.2-GA
org.jgrapht:jgrapht-core 1.1.0
org.jgrapht:jgrapht-core 1.4.0
org.jgrapht:jgrapht-io 1.1.0
org.jpmml:pmml-model 1.2.15
org.jpmml:pmml-schema 1.2.15
org.json:json 20200518
org.jvnet:tiger-types 1.4
org.ojalgo:ojalgo-commons-math3 1.0.0
org.ojalgo:ojalgo 44.0.0
org.rcsb:ciftools-java-jdk8 3.0.0
org.reflections:reflections 0.9.10
org.roaringbitmap:RoaringBitmap 0.7.45
org.roaringbitmap:shims 0.7.45
org.sharegov:mjson 1.4.1
org.slf4j:jcl-over-slf4j 1.7.16
org.slf4j:slf4j-api 1.7.30
org.slf4j:slf4j-log4j12 1.7.25
org.snpeff.SnpEff:snpEff *
org.snpeff:SnpEff 5.1
org.snpsift.SnpSift:SnpSift *
org.spark-project.spark:unused 1.0.0
org.threeten:threeten-extra 1.7.0
org.threeten:threetenbp 1.5.2
org.xerial.snappy:snappy-java 1.0.3-rc3
org.xerial:sqlite-jdbc 3.36.0.3