Ecosyste.ms: Docker
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bigomics/omicsplayground-base : ub2204_v2
Ubuntu 22.04.3 LTS
Latest release: 9 months ago - 1,507 downloads - 1,536 dependencies
JSONDependencies
- @PKGNAME@ @PKGVERSION@
- @PKGNAME@ @VERSION@
- RaggedExperiment 1.18.0
- AnnotationDbi 1.56.2
- AnnotationFilter 1.18.0
- AsioHeaders 1.22.1-2
- BH 1.81.0-1
- BSgenome 1.62.0
- Biobase 2.54.0
- BiocFileCache 2.2.1
- BiocGenerics 0.40.0
- BiocIO 1.4.0
- BiocManager 1.30.22
- BiocNeighbors 1.12.0
- BiocParallel 1.28.3
- BiocSingular 1.10.0
- BiocVersion 3.14.0
- Biostrings 2.62.0
- Boruta 8.0.0
- Cairo 1.6-1
- ComICS 1.0.4
- ComplexHeatmap 2.10.0
- DBI 1.1.3
- DDRTree 0.1.5
- DESeq2 1.34.0
- DEoptimR 1.1-3
- DEsingle 1.14.0
- DT 0.30
- DeMixT 1.10.0
- DeconRNASeq 1.36.0
- DelayedArray 0.20.0
- DelayedMatrixStats 1.16.0
- DiagrammeR 1.0.10
- EPIC 1.1.7
- EnsDb.Hsapiens.v86 2.99.0
- EnsDb.Mmusculus.v79 2.99.0
- EnsDb.Rnorvegicus.v79 2.99.0
- FNN 1.1.3.2
- FastGGM 1.0
- Formula 1.2-5
- GEOmetadb 1.56.0
- GEOquery 2.62.2
- GO.db 3.14.0
- GSEABase 1.56.0
- GSVA 1.42.0
- GenomeInfoDb 1.30.1
- GenomeInfoDbData 1.2.7
- GenomicAlignments 1.30.0
- GenomicDataCommons 1.18.0
- GenomicFeatures 1.46.5
- GenomicFiles 1.30.0
- GenomicRanges 1.46.1
- GetoptLong 1.0.5
- GlobalOptions 0.1.2
- HDF5Array 1.22.1
- HSMMSingleCell 1.14.0
- HiddenMarkov 1.8-13
- Hmisc 5.1-1
- IRanges 2.28.0
- ISOpureR 1.1.3
- JADE 2.0-4
- KEGG.db 3.2.4
- KEGGREST 1.34.0
- KEGGgraph 1.54.0
- KernSmooth 2.23-20
- Lmoments 1.3-1
- MASS 7.3-55
- MAST 1.20.0
- Matrix 1.4-0
- Matrix 1.6-1.1
- MatrixGenerics 1.6.0
- MatrixModels 0.5-2
- MultiAssayExperiment 1.20.0
- NNLM 0.4.4
- PCSF 0.99.1
- ProtGenerics 1.26.0
- R.methodsS3 1.8.2
- R.oo 1.25.0
- R.utils 2.12.2
- R6 2.5.1
- RANN 2.6.1
- RBGL 1.70.0
- RColorBrewer 1.1-3
- RCurl 1.98-1.12
- RMTstat 0.3.1
- ROCR 1.0-11
- RSQLite 2.3.1
- RSpectra 0.16-1
- RUnit 0.4.32
- Rcpp 1.0.11
- RVenn 1.1.0
- RcppAnnoy 0.0.21
- RcppArmadillo 0.12.6.4.0
- RcppEigen 0.3.3.9.3
- RcppGSL 0.3.13
- RcppGSLExample 0.0.3
- RcppHNSW 0.5.0
- RcppParallel 5.1.7
- RcppProgress 0.4.2
- RcppProgressArmadillo 0.2
- RcppProgressETA 0.1
- RcppProgressExample 0.2
- RcppTOML 0.2.2
- RcppZiggurat 0.1.6
- Rdpack 2.5
- RdpackTester 1.0
- ResidualMatrix 1.4.0
- Rfast 2.0.8
- Rgraphviz 2.38.0
- Rhdf5lib 1.16.0
- RhpcBLASctl 0.23-42
- Rhtslib 1.26.0
- Rook 1.2
- Rsamtools 2.10.0
- Rtsne 0.16
- S4Vectors 0.32.4
- SBGNview.data 1.8.0
- SBGNview 1.8.0
- SILGGM 1.0.0
- SQUAREM 2021.1
- ScaledMatrix 1.2.0
- Seurat 4.4.0
- SeuratObject 4.1.4
- SingleCellExperiment 1.16.0
- SmartSVA 0.1.3
- SparseM 1.81
- SummarizedExperiment 1.24.0
- SuppDists 1.1-9.7
- TCGAbiolinks 2.22.4
- TCGAbiolinksGUI.data 1.14.1
- TCGAutils 1.14.1
- TFisher 0.2.0
- TH.data 1.1-2
- TSP 1.2-4
- TxDb.Hsapiens.UCSC.hg19.knownGene 3.2.2
- TxDb.Mmusculus.UCSC.mm10.knownGene 3.10.0
- UNDO 1.36.0
- V8 4.4.0
- VGAM 1.1-9
- VariantAnnotation 1.40.0
- WGCNA 1.72-1
- XML 3.99-0.14
- XVector 0.34.0
- abind 1.4-5
- annotate 1.72.0
- anytime 0.3.9
- ape 5.7-1
- argparse 2.2.2
- askpass 1.2.0
- assertthat 0.2.1
- audio 0.1-11
- backports 1.4.1
- base64enc 0.1-3
- base 4.1.2
- batchelor 1.10.0
- bbmle 1.0.25
- bdsmatrix 1.3-6
- beachmat 2.10.0
- beachtest 1.0.0
- beepr 1.3
- beeswarm 0.4.0
- bigLoaders 0.0.2
- bigdash 0.0.0.9003
- bigomics.app 3.0.0.9000
- bigomics.board.biomarker 3.0.0.9000
- bigomics.board.clustering 3.0.0.9000
- bigomics.board.compare 3.0.0.9000
- bigomics.board.connectivity 3.0.0.9000
- bigomics.board.correlation 3.0.0.9000
- bigomics.board.dataview 3.0.0.9000
- bigomics.board.drugconnectivity 3.0.0.9000
- bigomics.board.enrichment 3.0.0.9000
- bigomics.board.expression 3.0.0.9000
- bigomics.board.featuremap 3.0.0.9000
- bigomics.board.functional 3.0.0.9000
- bigomics.board.intersection 3.0.0.9000
- bigomics.board.loading 3.0.0.9000
- bigomics.board.signature 3.0.0.9000
- bigomics.board.singlecell 3.0.0.9000
- bigomics.board.tcga 3.0.0.9000
- bigomics.board.upload 3.0.0.9000
- bigomics.board.user 3.0.0.9000
- bigomics.board.wgcna 3.0.0.9000
- bigomics.board.wordcloud 3.0.0.9000
- biocViews 1.62.1
- biomaRt 2.50.3
- bipartite 2.18
- bit64 4.0.5
- bit 4.0.5
- bitops 1.0-7
- blastula 0.3.4
- blob 1.2.4
- bluster 1.4.0
- bookdown 0.36
- boot 1.3-28
- bootstrap 2019.6
- brew 1.0-8
- brio 1.1.3
- broom 1.0.5
- bslib 0.5.1
- bsutils 0.0.0.9000
- bumphunter 1.36.0
- ca 0.71.1
- caTools 1.18.2
- cachem 1.0.8
- callr 3.7.3
- car 3.1-2
- carData 3.0-5
- checkmate 2.2.0
- chromote 0.1.2
- chron 2.3-61
- circlize 0.4.15
- class 7.3-20
- classInt 0.4-10
- cli 3.6.1
- clipr 0.8.0
- clue 0.3-65
- cluster 2.1.2
- coda 0.19-4
- codetools 0.2-18
- coin 1.4-3
- colorspace 2.1-0
- colourpicker 1.3.0
- combinat 0.0-8
- commonmark 1.9.0
- compiler 4.1.2
- corpcor 1.6.10
- corpora 0.6
- corrplot 0.92
- cowplot 1.1.1
- cpp11 0.4.6
- crayon 1.5.2
- credentials 2.0.1
- crosstalk 1.2.0
- curl 5.1.0
- data.table 1.14.8
- data.tree 1.0.0
- datasets 4.1.2
- dbplyr 2.3.4
- deldir 1.0-9
- dendextend 1.17.1
- densityClust 0.3.2
- derfinder 1.28.0
- derfinderHelper 1.28.0
- desc 1.4.2
- devtools 2.4.5
- diagram 1.6.5
- diffobj 0.3.5
- digest 0.6.33
- diptest 0.76-0
- distillery 1.2-1
- doParallel 1.0.17
- doRNG 1.8.6
- docopt 0.7.1
- dotCall64 1.1-0
- downlit 0.4.3
- downloader 0.4
- dplyr 1.1.3
- dqrng 0.3.1
- httr 1.4.7
- iTALK 0.1.0
- dynamicTreeCut 1.63-1
- e1071 1.7-13
- edgeR 3.36.0
- egg 0.4.5
- ellipse 0.5.0
- ellipsis 0.3.2
- ensembldb 2.18.4
- evaluate 0.22
- evd 2.3-6.1
- extRemes 2.1-3
- fansi 1.0.5
- farver 2.1.1
- fastICA 1.2-3
- fastcluster 1.2.3
- fastmap 1.1.1
- fastmatch 1.1-4
- fdrtool 1.2.17
- fgsea 1.20.0
- fields 15.2
- filelock 1.0.2
- findpython 1.0.8
- firebase 0.2.1.9000
- fitdistrplus 1.1-11
- flashClust 1.01-2
- flexdashboard 0.6.2
- flexmix 2.3-19
- fontawesome 0.5.2
- forcats 1.0.0
- foreach 1.5.2
- foreign 0.8-82
- formatR 1.14
- fpc 2.2-10
- fresh 0.2.0
- fs 1.6.3
- futile.logger 1.4.3
- futile.options 1.0.1
- future.apply 1.11.0
- future 1.33.0
- gamlss.data 6.0-2
- gamlss.dist 6.1-1
- gamlss 5.4-20
- gclus 1.3.2
- genefilter 1.76.0
- geneplotter 1.72.0
- generics 0.1.3
- gert 2.0.0
- getPass 0.2-2
- getopt 1.20.4
- ggExtra 0.10.1
- ggVennDiagram 1.2.3
- ggbeeswarm 0.7.2
- ggdendro 0.1.23
- ggfittext 0.10.1
- ggforce 0.4.1
- ggplot2 3.4.4
- ggrepel 0.9.4
- ggridges 0.5.4
- ggtext 0.1.2
- gh 1.4.0
- gitcreds 0.1.2
- glasso 1.11
- glmnet 4.1-8
- globals 0.16.2
- glue 1.6.2
- goftest 1.2-3
- gplots 3.1.3
- grDevices 4.1.2
- graph 1.72.0
- graphics 4.1.2
- grid 4.1.2
- gridExtra 2.3
- gridGraphics 0.5-1
- gridtext 0.1.5
- gsubfn 0.7
- gtable 0.3.4
- gtools 3.9.4
- harmony 1.1.0
- hdf5r 1.3.8
- heatmaply 1.5.0
- here 1.0.1
- hexbin 1.28.3
- highr 0.10
- hms 1.1.3
- homologene 1.4.68.19.3.27
- htmlTable 2.4.1
- htmltools 0.5.6.1
- htmlwidgets 1.6.2
- httpuv 1.6.12
- httr2 0.2.3
- ica 1.0-3
- igraph 1.5.1
- iheatmapr 0.7.0
- impute 1.68.0
- ini 0.3.1
- inspectdf 0.0.12
- inum 1.0-5
- ipred 0.9-14
- irlba 2.3.5.1
- isoband 0.2.7
- isva 1.9
- iterators 1.0.14
- jose 1.2.0
- jpeg 0.1-10
- jquerylib 0.1.4
- jsonlite 1.8.7
- kableExtra 1.3.4
- kernlab 0.9-32
- knitr 1.44
- labeling 0.4.3
- lambda.r 1.2.4
- lars 1.3
- later 1.3.1
- lattice 0.20-45
- lava 1.7.2.1
- lavaan 0.6-16
- lazyeval 0.2.2
- learnr 0.11.5
- leiden 0.4.3
- leidenbase 0.1.25
- libcoin 1.0-10
- lifecycle 1.0.3
- liger 2.0.1
- limSolve 1.5.7
- limma 3.50.3
- listenv 0.9.0
- listviewer 4.0.0
- lme4 1.1-34
- lmtest 0.9-40
- locfit 1.5-9.4
- lpSolve 5.6.19
- magrittr 2.0.3
- maps 3.4.1
- maptools 1.1-8
- markdown 1.11
- mathjaxr 1.6-0
- matrixStats 1.0.0
- matrixTests 0.2.3
- matrixcalc 1.0-6
- maxLik 1.5-2
- mclust 6.0.0
- memoise 2.0.1
- metap 1.9
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- methods 4.1.2
- mgcv 1.8-39
- mime 0.12
- miniUI 0.1.1.1
- minqa 1.2.6
- miscTools 0.6-28
- mixOmics 6.18.1
- mnormt 2.1.1
- modeltools 0.2-23
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- morebeach 1.0.0
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- network 1.18.1
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- org.Hs.eg.db 3.14.0
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- parallel 4.1.2
- parallelly 1.36.0
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- pcaMethods 1.86.0
- permute 0.9-7
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- praise 1.0.0
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- processx 3.8.2
- prodlim 2023.08.28
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- progress 1.2.2
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- ps 1.7.5
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- quadprog 1.5-8
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- sever 0.0.7
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- stats4 4.1.2
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