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bac3/microbiome : latest
16S rRNA gene meta-barcoding NGS data analysis app - microbioma batterico. App streamlit.
Latest release: over 1 year ago - 134 downloads - 752 dependencies
JSONDependencies
- @PKGNAME@ @VERSION@
- ANCOMBC 2.0.1
- BH 1.81.0-1
- Biobase 2.58.0
- BiocBaseUtils 1.0.0
- BiocGenerics 0.44.0
- BiocNeighbors 1.16.0
- BiocParallel 1.32.5
- BiocSingular 1.14.0
- Biostrings 2.66.0
- CVXR 1.0-11
- Cairo 1.6-0
- DBI 1.1.3
- DECIPHER 2.26.0
- DelayedArray 0.24.0
- DelayedMatrixStats 1.20.0
- DescTools 0.99.48
- DirichletMultinomial 1.40.0
- ECOSolveR 0.5.4
- Exact 3.2
- FNN 1.1.3.1
- Formula 1.2-5
- GenomeInfoDb 1.34.8
- GenomeInfoDbData 1.2.9
- GenomicAlignments 1.34.0
- GenomicRanges 1.50.0
- Hmisc 4.8-0
- IRanges 2.32.0
- MASS 7.3-58.2
- Matrix 1.5-3
- MatrixGenerics 1.10.0
- MultiAssayExperiment 1.24.0
- R6 2.5.1
- RColorBrewer 1.1-3
- RCurl 1.98-1.10
- RSQLite 2.2.20
- RSpectra 0.16-1
- Rcpp 1.0.10
- RcppAnnoy 0.0.20
- RcppEigen 0.3.3.9.3
- RcppHNSW 0.4.1
- RcppML 0.3.7
- RcppParallel 5.1.6
- RcppProgress 0.4.2
- RcppProgressArmadillo 0.2
- RcppProgressETA 0.1
- RcppProgressExample 0.2
- Rdpack 2.4
- RdpackTester 1.0
- Rhdf5lib 1.20.0
- Rhtslib 2.0.0
- Rmpfr 0.9-1
- Rsamtools 2.14.0
- Rtsne 0.16
- S4Vectors 0.36.0
- ScaledMatrix 1.6.0
- ShortRead 1.56.0
- SingleCellExperiment 1.20.0
- SummarizedExperiment 1.28.0
- TreeSummarizedExperiment 2.6.0
- XVector 0.38.0
- acepack 1.4.1
- ade4 1.7-22
- ape 5.7-1
- askpass 1.1
- assertthat 0.2.1
- backports 1.4.1
- base64enc 0.1-3
- base 4.2.2
- beachmat 2.14.0
- beachtest 1.0.0
- beeswarm 0.4.0
- bibtex 0.5.1
- biomformat 1.26.0
- bit64 4.0.5
- bit 4.0.5
- bitops 1.0-7
- blob 1.2.3
- boot 1.3-28.1
- broom 1.0.3
- bslib 0.4.2
- cachem 1.0.7
- callr 3.7.3
- cellranger 1.1.0
- checkmate 2.1.0
- class 7.3-21
- cli 3.6.0
- clipr 0.8.0
- cluster 2.1.4
- codetools 0.2-19
- colorspace 2.1-0
- compiler 4.2.2
- cpp11 0.4.3
- crayon 1.5.2
- curl 4.3.3
- dada2 1.26.0
- data.table 1.14.8
- datasets 4.2.2
- dbplyr 2.3.1
- decontam 1.18.0
- deldir 1.0-6
- digest 0.6.31
- doParallel 1.0.17
- doRNG 1.8.6
- dplyr 1.1.0
- dqrng 0.3.0
- dtplyr 1.3.0
- e1071 1.7-13
- ellipsis 0.3.2
- emmeans 1.8.4-1
- energy 1.7-11
- estimability 1.4.1
- evaluate 0.20
- expm 0.999-7
- fansi 1.0.4
- farver 2.1.1
- fastmap 1.1.1
- forcats 1.0.0
- foreach 1.5.2
- foreign 0.8-84
- formatR 1.14
- frictionless 1.0.2
- fs 1.6.1
- futile.logger 1.4.3
- futile.options 1.0.1
- gargle 1.3.0
- gbRd 0.4-11
- generics 0.1.3
- getopt 1.20.3
- ggbeeswarm 0.7.1
- ggplot2 3.4.1
- ggrastr 1.0.1
- ggrepel 0.9.3
- gld 2.6.6
- glue 1.6.2
- gmp 0.7-1
- googledrive 2.0.0
- googlesheets4 1.0.1
- grDevices 4.2.2
- graphics 4.2.2
- grid 4.2.2
- gridExtra 2.3
- gsl 2.1-8
- gtable 0.3.1
- haven 2.5.1
- highr 0.10
- hms 1.1.2
- htmlTable 2.4.1
- htmltools 0.5.4
- htmlwidgets 1.6.1
- httr 1.4.5
- hwriter 1.3.2.1
- ids 1.0.1
- igraph 1.4.1
- interp 1.1-3
- irlba 2.3.5.1
- isoband 0.2.7
- iterators 1.0.14
- jpeg 0.1-10
- jquerylib 0.1.4
- jsonlite 1.8.4
- knitr 1.42
- labeling 0.4.2
- lambda.r 1.2.4
- lattice 0.20-45
- latticeExtra 0.6-30
- lazyeval 0.2.2
- lifecycle 1.0.3
- lme4 1.1-31
- lmerTest 3.1-3
- lmom 2.9
- lubridate 1.9.2
- magrittr 2.0.3
- matrixStats 0.63.0
- memoise 2.0.1
- methods 4.2.2
- mgcv 1.8-41
- mia 1.6.0
- mime 0.12
- minqa 1.2.5
- modelr 0.1.10
- morebeach 1.0.0
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- openssl 2.0.5
- optparse 1.7.3
- osqp 0.6.0.8
- parallel 4.2.2
- permute 0.9-7
- pheatmap 1.0.12
- phyloseq 1.42.0
- pillar 1.8.1
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- pkgconfig 2.0.3
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- progress 1.2.2
- proxy 0.4-27
- ps 1.7.2
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- ragg 1.2.4
- rappdirs 0.3.3
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- readxl 1.4.2
- registry 0.5-1
- rematch2 2.1.2
- rematch 1.0.1
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- reshape2 1.4.4
- rhdf5 2.42.0
- rhdf5filters 1.10.0
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- scales 1.2.1
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- scs 3.0-1
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- snow 0.4-4
- sp 1.6-0
- sparseMatrixStats 1.10.0
- splines 4.2.2
- statmod 1.5.0
- stats4 4.2.2
- stats 4.2.2
- stringi 1.7.12
- stringr 1.5.0
- survival 3.5-3
- sys 3.4.1
- systemfonts 1.0.4
- tcltk 4.2.2
- testRcppAttributePackage 1.0
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- tibble 3.1.8
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- timechange 0.2.0
- tinytex 0.44
- tools 4.2.2
- translations 4.2.2
- treeio 1.22.0
- tzdb 0.3.0
- utf8 1.2.3
- utils 4.2.2
- uuid 1.1-0
- uwot 0.1.14
- vctrs 0.5.2
- vegan 2.6-4
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- withr 2.5.0
- xfun 0.37
- xml2 1.3.3
- xtable 1.8-4
- yaml 2.3.7
- yulab.utils 0.0.6
- zlibbioc 1.44.0
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